Wall clock time and date at job start Tue Mar 31 2020 20:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86796 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46954 * 300.00253 * 3 2 1 6 6 H 1.48498 * 109.47009 * 59.99857 * 3 2 1 7 7 C 1.38638 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.35773 * 116.99829 * 174.95414 * 9 7 2 11 11 C 1.38738 * 120.08853 * 5.40696 * 10 9 7 12 12 C 1.38349 * 119.97487 * 179.97438 * 11 10 9 13 13 F 1.35109 * 119.92125 * 179.97438 * 12 11 10 14 14 C 1.38539 * 120.15097 * 0.02562 * 12 11 10 15 15 C 1.38194 * 120.17657 * 359.68397 * 14 12 11 16 16 C 1.38688 * 120.01911 * 0.58969 * 15 14 12 17 17 N 1.40142 * 120.07396 * 179.70072 * 16 15 14 18 18 C 1.34771 * 119.99741 * 34.62407 * 17 16 15 19 19 O 1.21590 * 120.00363 * 355.66124 * 18 17 16 20 20 N 1.34780 * 119.99880 * 175.38051 * 18 17 16 21 21 C 1.44578 * 118.64302 * 0.28279 * 20 18 17 22 22 C 1.54866 * 109.59977 * 270.69853 * 21 20 18 23 23 C 1.47089 * 110.32665 * 288.73568 * 22 21 20 24 24 C 1.52574 * 114.32717 * 62.79460 * 23 22 21 25 25 H 1.09000 * 109.48583 * 34.95358 * 24 23 22 26 26 O 1.42898 * 109.49189 * 155.00258 * 24 23 22 27 27 C 1.50886 * 109.36021 * 274.99419 * 24 23 22 28 28 C 1.47599 * 118.64731 * 180.02562 * 20 18 17 29 29 H 0.96991 * 120.00070 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.01311 * 359.95662 * 11 10 9 31 31 H 1.08010 * 119.90674 * 179.97438 * 14 12 11 32 32 H 1.07998 * 119.98967 * 180.32014 * 15 14 12 33 33 H 0.97001 * 120.00027 * 214.62185 * 17 16 15 34 34 H 1.09002 * 109.45537 * 30.73469 * 21 20 18 35 35 H 1.09000 * 109.45640 * 150.68871 * 21 20 18 36 36 H 1.09003 * 109.32548 * 48.99304 * 22 21 20 37 37 H 1.08995 * 109.33282 * 168.46987 * 22 21 20 38 38 H 1.08994 * 108.51787 * 184.05113 * 23 22 21 39 39 H 1.09007 * 108.51081 * 301.70520 * 23 22 21 40 40 H 0.96693 * 113.99874 * 179.97438 * 26 24 23 41 41 H 1.08999 * 109.36633 * 212.07490 * 27 24 23 42 42 H 1.08998 * 109.36151 * 331.82119 * 27 24 23 43 43 H 1.09001 * 108.95135 * 258.58450 * 28 20 18 44 44 H 1.09006 * 108.94384 * 17.20716 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1075 11 6 3.4561 -3.4396 -0.0975 12 6 4.2032 -4.5990 -0.2061 13 9 5.5527 -4.5345 -0.1969 14 6 3.5706 -5.8257 -0.3254 15 6 2.1906 -5.8982 -0.3300 16 6 1.4346 -4.7400 -0.2273 17 7 0.0351 -4.8116 -0.2381 18 6 -0.5903 -5.8612 0.3307 19 8 0.0595 -6.7839 0.7831 20 7 -1.9360 -5.8854 0.4031 21 6 -2.6796 -4.7728 -0.1442 22 6 -2.8741 -3.6910 0.9468 23 6 -3.8345 -4.1542 1.9601 24 6 -3.3865 -5.3921 2.7313 25 1 -2.3062 -5.3611 2.8728 26 8 -4.0337 -5.4205 4.0050 27 6 -3.7566 -6.6290 1.9504 28 6 -2.5899 -7.0492 1.0327 29 1 -0.4850 0.8400 0.0004 30 1 3.9515 -2.4844 -0.0054 31 1 4.1577 -6.7284 -0.4103 32 1 1.7006 -6.8566 -0.4179 33 1 -0.4834 -4.1057 -0.6549 34 1 -2.1302 -4.3468 -0.9837 35 1 -3.6539 -5.1210 -0.4872 36 1 -1.9166 -3.4848 1.4251 37 1 -3.2486 -2.7770 0.4860 38 1 -4.0040 -3.3459 2.6714 39 1 -4.7784 -4.3809 1.4642 40 1 -3.7954 -6.1826 4.5503 41 1 -3.9819 -7.4399 2.6431 42 1 -4.6349 -6.4212 1.3392 43 1 -2.9694 -7.7076 0.2513 44 1 -1.8525 -7.5926 1.6237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365166229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:39 Heat of formation + Delta-G solvation = -114.591657 kcal Electronic energy + Delta-G solvation = -30405.696589 eV Core-core repulsion = 26045.783342 eV Total energy + Delta-G solvation = -4359.913247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.24021 -40.75363 -39.24262 -38.21009 -36.49171 -35.82429 -34.25358 -33.06806 -32.41794 -31.86304 -29.40615 -28.25010 -26.54517 -25.51113 -25.01509 -22.84583 -22.01877 -21.22493 -20.55684 -19.30939 -18.42556 -18.32893 -17.54048 -17.07035 -16.90292 -15.80622 -15.65228 -15.22941 -15.13967 -15.04344 -14.88663 -14.36974 -14.27835 -13.88063 -13.68462 -13.58012 -13.52339 -13.48293 -13.22379 -12.86886 -12.55035 -12.26512 -12.13520 -11.78677 -11.65712 -11.38111 -11.32720 -11.21849 -10.96563 -10.76488 -10.71947 -10.53139 -10.50015 -10.03161 -9.81072 -9.75095 -9.43267 -8.96931 -8.58048 -7.86378 -7.09608 -6.61193 -4.18542 1.85883 2.13104 2.77314 3.05001 3.07824 3.12808 3.41850 3.84179 4.02237 4.16040 4.35710 4.62290 4.74790 4.85634 4.86717 4.95481 4.96582 5.06567 5.12559 5.26537 5.35896 5.48689 5.59501 5.62302 5.69881 5.74426 5.77583 5.91128 6.01189 6.04853 6.10215 6.19569 6.22282 6.44278 6.55203 6.62848 6.74897 6.91332 6.92900 7.08123 7.11901 7.25962 7.57297 7.66956 7.83288 8.18415 8.81133 8.85806 9.46686 10.55712 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.004469 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.503568 B = 6263.624284 C = 8644.784066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.157 3.843 11 C -0.258 4.258 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.050 4.050 16 C 0.076 3.924 17 N -0.663 5.663 18 C 0.702 3.298 19 O -0.586 6.586 20 N -0.623 5.623 21 C 0.109 3.891 22 C -0.139 4.139 23 C -0.108 4.108 24 C 0.108 3.892 25 H 0.060 0.940 26 O -0.571 6.571 27 C -0.161 4.161 28 C 0.132 3.868 29 H 0.271 0.729 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.411 0.589 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.375 0.625 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 -9.561 0.302 12.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.101 3.899 11 C -0.279 4.279 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.249 4.249 15 C -0.071 4.071 16 C -0.019 4.019 17 N -0.312 5.312 18 C 0.405 3.595 19 O -0.465 6.465 20 N -0.361 5.361 21 C -0.015 4.015 22 C -0.178 4.178 23 C -0.145 4.145 24 C 0.049 3.951 25 H 0.078 0.922 26 O -0.377 6.377 27 C -0.200 4.200 28 C 0.009 3.991 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.222 0.778 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.964 -9.431 0.426 12.351 hybrid contribution 0.696 0.817 0.032 1.074 sum -7.267 -8.613 0.457 11.279 Atomic orbital electron populations 1.70008 1.05848 1.27793 1.45574 1.25252 0.95913 0.98748 0.96200 0.85637 0.79324 0.80169 0.78326 1.18991 1.20049 1.20084 1.21389 0.91999 0.80427 1.52956 0.88848 1.83930 1.33876 1.11232 1.78043 1.18815 0.89472 0.87278 0.94342 1.20843 0.93414 0.98422 1.15232 1.17462 0.75923 0.94349 1.01475 1.91412 1.30168 1.97382 1.94111 1.20486 0.94633 0.95799 1.13955 1.20672 0.92122 0.97439 0.96829 1.16679 0.81370 0.91565 1.12323 1.42412 1.05194 1.24535 1.59044 1.15908 0.81767 0.83066 0.78810 1.90849 1.64323 1.37327 1.53975 1.46890 1.04184 1.22030 1.62948 1.21591 0.97237 0.86784 0.95881 1.21243 1.01223 0.98543 0.96767 1.20319 0.99200 0.97220 0.97757 1.21253 0.96355 0.94553 0.82890 0.92223 1.86511 1.71580 1.50673 1.28895 1.22601 0.98813 0.99036 0.99526 1.21656 0.94917 0.86476 0.96027 0.91951 0.83982 0.85992 0.83991 0.75061 0.90402 0.90208 0.90474 0.89468 0.91105 0.92008 0.77763 0.90144 0.90943 0.91949 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.72 13.67 55.48 0.76 -21.96 16 2 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 3 Si 0.94 19.49 29.55 -169.99 -5.02 14.46 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.16 9.49 30.88 0.29 -9.87 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.30 9.32 0.03 0.00 -4.30 16 10 C 0.16 3.59 6.66 -38.94 -0.26 3.34 16 11 C -0.26 -5.62 9.14 -39.36 -0.36 -5.98 16 12 C 0.13 2.56 7.29 -39.43 -0.29 2.27 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.23 -4.25 10.02 -39.49 -0.40 -4.65 16 15 C -0.05 -0.96 8.69 -39.43 -0.34 -1.31 16 16 C 0.08 1.57 6.33 -83.44 -0.53 1.04 16 17 N -0.66 -12.25 5.04 -14.07 -0.07 -12.32 16 18 C 0.70 12.20 8.06 -86.92 -0.70 11.49 16 19 O -0.59 -11.54 13.03 5.29 0.07 -11.47 16 20 N -0.62 -8.39 2.23 -178.07 -0.40 -8.79 16 21 C 0.11 1.29 5.17 -4.08 -0.02 1.27 16 22 C -0.14 -1.84 5.74 -28.58 -0.16 -2.00 16 23 C -0.11 -1.31 4.86 -29.79 -0.14 -1.46 16 24 C 0.11 1.29 3.08 -28.01 -0.09 1.20 16 25 H 0.06 0.86 7.49 -51.93 -0.39 0.47 16 26 O -0.57 -6.72 13.22 -35.23 -0.47 -7.19 16 27 C -0.16 -1.51 5.43 -27.13 -0.15 -1.66 16 28 C 0.13 1.47 6.14 -2.78 -0.02 1.45 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 30 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 31 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 32 H 0.14 2.67 6.19 -52.49 -0.32 2.34 16 33 H 0.41 7.32 6.16 -40.82 -0.25 7.07 16 34 H 0.08 0.94 6.18 -51.93 -0.32 0.62 16 35 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.95 8.06 -51.93 -0.42 0.54 16 39 H 0.06 0.66 7.35 -51.92 -0.38 0.28 16 40 H 0.38 2.86 8.95 45.56 0.41 3.27 16 41 H 0.08 0.61 7.90 -51.93 -0.41 0.20 16 42 H 0.07 0.63 7.31 -51.93 -0.38 0.25 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.16 6.95 -51.93 -0.36 0.80 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -30.12 358.47 -7.59 -37.71 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -4.64 Total: 15.18 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -3.26 Total: -3.85 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.29 Total: -43.07 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.40 Total: -22.96 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.12 -7.59 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365166229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.878 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds