Wall clock time and date at job start Tue Mar 31 2020 20:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86796 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46954 * 300.00253 * 3 2 1 6 6 H 1.48498 * 109.47009 * 59.99857 * 3 2 1 7 7 C 1.38638 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.35773 * 116.99829 * 174.95414 * 9 7 2 11 11 C 1.38738 * 120.08853 * 5.40696 * 10 9 7 12 12 C 1.38349 * 119.97487 * 179.97438 * 11 10 9 13 13 F 1.35109 * 119.92125 * 179.97438 * 12 11 10 14 14 C 1.38539 * 120.15097 * 0.02562 * 12 11 10 15 15 C 1.38194 * 120.17657 * 359.68397 * 14 12 11 16 16 C 1.38688 * 120.01911 * 0.58969 * 15 14 12 17 17 N 1.40142 * 120.07396 * 179.70072 * 16 15 14 18 18 C 1.34771 * 119.99741 * 34.62407 * 17 16 15 19 19 O 1.21590 * 120.00363 * 355.66124 * 18 17 16 20 20 N 1.34780 * 119.99880 * 175.38051 * 18 17 16 21 21 C 1.44578 * 118.64302 * 0.28279 * 20 18 17 22 22 C 1.54866 * 109.59977 * 270.69853 * 21 20 18 23 23 C 1.47089 * 110.32665 * 288.73568 * 22 21 20 24 24 C 1.52574 * 114.32717 * 62.79460 * 23 22 21 25 25 H 1.09000 * 109.48583 * 34.95358 * 24 23 22 26 26 O 1.42898 * 109.49189 * 155.00258 * 24 23 22 27 27 C 1.50886 * 109.36021 * 274.99419 * 24 23 22 28 28 C 1.47599 * 118.64731 * 180.02562 * 20 18 17 29 29 H 0.96991 * 120.00070 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.01311 * 359.95662 * 11 10 9 31 31 H 1.08010 * 119.90674 * 179.97438 * 14 12 11 32 32 H 1.07998 * 119.98967 * 180.32014 * 15 14 12 33 33 H 0.97001 * 120.00027 * 214.62185 * 17 16 15 34 34 H 1.09002 * 109.45537 * 30.73469 * 21 20 18 35 35 H 1.09000 * 109.45640 * 150.68871 * 21 20 18 36 36 H 1.09003 * 109.32548 * 48.99304 * 22 21 20 37 37 H 1.08995 * 109.33282 * 168.46987 * 22 21 20 38 38 H 1.08994 * 108.51787 * 184.05113 * 23 22 21 39 39 H 1.09007 * 108.51081 * 301.70520 * 23 22 21 40 40 H 0.96693 * 113.99874 * 179.97438 * 26 24 23 41 41 H 1.08999 * 109.36633 * 212.07490 * 27 24 23 42 42 H 1.08998 * 109.36151 * 331.82119 * 27 24 23 43 43 H 1.09001 * 108.95135 * 258.58450 * 28 20 18 44 44 H 1.09006 * 108.94384 * 17.20716 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1075 11 6 3.4561 -3.4396 -0.0975 12 6 4.2032 -4.5990 -0.2061 13 9 5.5527 -4.5345 -0.1969 14 6 3.5706 -5.8257 -0.3254 15 6 2.1906 -5.8982 -0.3300 16 6 1.4346 -4.7400 -0.2273 17 7 0.0351 -4.8116 -0.2381 18 6 -0.5903 -5.8612 0.3307 19 8 0.0595 -6.7839 0.7831 20 7 -1.9360 -5.8854 0.4031 21 6 -2.6796 -4.7728 -0.1442 22 6 -2.8741 -3.6910 0.9468 23 6 -3.8345 -4.1542 1.9601 24 6 -3.3865 -5.3921 2.7313 25 1 -2.3062 -5.3611 2.8728 26 8 -4.0337 -5.4205 4.0050 27 6 -3.7566 -6.6290 1.9504 28 6 -2.5899 -7.0492 1.0327 29 1 -0.4850 0.8400 0.0004 30 1 3.9515 -2.4844 -0.0054 31 1 4.1577 -6.7284 -0.4103 32 1 1.7006 -6.8566 -0.4179 33 1 -0.4834 -4.1057 -0.6549 34 1 -2.1302 -4.3468 -0.9837 35 1 -3.6539 -5.1210 -0.4872 36 1 -1.9166 -3.4848 1.4251 37 1 -3.2486 -2.7770 0.4860 38 1 -4.0040 -3.3459 2.6714 39 1 -4.7784 -4.3809 1.4642 40 1 -3.7954 -6.1826 4.5503 41 1 -3.9819 -7.4399 2.6431 42 1 -4.6349 -6.4212 1.3392 43 1 -2.9694 -7.7076 0.2513 44 1 -1.8525 -7.5926 1.6237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365166229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:38 Heat of formation + Delta-G solvation = -134.260059 kcal Electronic energy + Delta-G solvation = -30406.549474 eV Core-core repulsion = 26045.783342 eV Total energy + Delta-G solvation = -4360.766133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.82597 -42.08637 -40.75872 -39.46159 -38.07520 -36.99994 -35.69964 -34.30232 -34.16089 -32.86583 -31.07416 -29.81437 -27.64726 -27.34759 -26.01808 -24.28909 -23.57626 -22.62927 -21.54355 -20.59456 -20.12869 -19.79653 -19.03160 -18.33457 -18.10003 -17.21461 -16.97381 -16.88071 -16.60827 -16.48689 -16.06260 -15.95705 -15.57974 -15.46794 -15.23067 -14.94492 -14.74275 -14.69441 -14.56100 -14.03958 -13.91715 -13.66204 -13.45365 -13.37491 -13.04323 -12.73829 -12.56743 -12.35220 -12.30948 -12.19211 -12.13592 -11.78836 -11.63221 -11.47833 -11.23093 -10.98105 -10.93140 -10.81869 -9.74650 -9.51301 -8.73128 -8.49676 -6.15431 0.21514 0.46946 1.37315 1.42444 1.52042 1.53492 2.02811 2.14182 2.68697 2.80735 3.06408 3.17543 3.18702 3.45863 3.70078 3.84155 3.92688 3.94965 4.05248 4.10676 4.16588 4.31371 4.35835 4.41126 4.54734 4.60902 4.68532 4.84558 4.85993 4.91584 4.95983 5.02326 5.10761 5.13924 5.21518 5.22918 5.30372 5.34530 5.35713 5.53991 5.64677 5.82438 5.94546 6.07265 6.80551 6.84929 6.94691 7.41739 7.63928 8.70208 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.004469 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.503568 B = 6263.624284 C = 8644.784066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.006 4.006 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.416 4.416 8 H 0.097 0.903 9 O -0.200 6.200 10 C 0.130 3.870 11 C -0.265 4.265 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.204 4.204 15 C -0.050 4.050 16 C 0.076 3.924 17 N -0.666 5.666 18 C 0.698 3.302 19 O -0.611 6.611 20 N -0.613 5.613 21 C 0.110 3.890 22 C -0.131 4.131 23 C -0.107 4.107 24 C 0.111 3.889 25 H 0.024 0.976 26 O -0.583 6.583 27 C -0.148 4.148 28 C 0.128 3.872 29 H 0.274 0.726 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.030 0.970 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.393 0.607 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -11.287 -0.185 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.206 4.206 3 Si 0.829 3.171 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.492 4.492 8 H 0.114 0.886 9 O -0.105 6.105 10 C 0.076 3.924 11 C -0.285 4.285 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.223 4.223 15 C -0.071 4.071 16 C -0.020 4.020 17 N -0.315 5.315 18 C 0.400 3.600 19 O -0.492 6.492 20 N -0.349 5.349 21 C -0.013 4.013 22 C -0.170 4.170 23 C -0.144 4.144 24 C 0.052 3.948 25 H 0.042 0.958 26 O -0.392 6.392 27 C -0.186 4.186 28 C 0.007 3.993 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.250 0.750 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.243 0.757 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.732 -11.208 -0.053 14.209 hybrid contribution 0.960 1.134 0.224 1.503 sum -7.772 -10.075 0.172 12.725 Atomic orbital electron populations 1.70115 1.07319 1.28763 1.47320 1.26308 0.96856 1.01861 0.95591 0.84651 0.78234 0.75617 0.78564 1.18220 1.19117 1.19632 1.21749 0.92441 0.81169 1.53844 0.88567 1.83914 1.34603 1.11755 1.80238 1.19173 0.90149 0.87474 0.95593 1.20912 0.93318 0.99051 1.15256 1.17456 0.76213 0.94244 1.01916 1.91429 1.29504 1.97357 1.94074 1.20875 0.94518 0.96448 1.10499 1.20864 0.92463 0.97223 0.96534 1.16954 0.82694 0.91311 1.11026 1.42446 1.04548 1.25046 1.59470 1.16080 0.83071 0.82316 0.78517 1.90812 1.65312 1.38075 1.54998 1.46999 1.02807 1.22927 1.62129 1.21716 0.98794 0.85919 0.94906 1.21133 0.99102 0.99374 0.97371 1.20315 0.99937 0.96910 0.97250 1.21144 0.94347 0.95783 0.83548 0.95754 1.86474 1.71402 1.52172 1.29154 1.22519 0.98402 0.98273 0.99435 1.21901 0.94922 0.85662 0.96850 0.91689 0.84711 0.82448 0.82892 0.75007 0.90937 0.86187 0.95110 0.89492 0.93049 0.89226 0.75738 0.87665 0.88930 0.89267 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.63 13.67 21.61 0.30 -49.34 16 2 C -0.01 -0.31 5.49 84.83 0.47 0.15 16 3 Si 1.01 40.73 29.55 68.60 2.03 42.75 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.42 -22.58 9.49 67.92 0.64 -21.93 16 8 H 0.10 4.95 5.20 -2.91 -0.02 4.94 16 9 O -0.20 -10.83 9.32 -22.82 -0.21 -11.05 16 10 C 0.13 6.18 6.66 22.68 0.15 6.33 16 11 C -0.26 -11.76 9.14 22.42 0.20 -11.55 16 12 C 0.12 4.75 7.29 22.37 0.16 4.92 16 13 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 14 C -0.20 -7.15 10.02 22.33 0.22 -6.93 16 15 C -0.05 -1.89 8.69 22.37 0.19 -1.70 16 16 C 0.08 3.20 6.33 38.21 0.24 3.44 16 17 N -0.67 -25.33 5.04 -316.70 -1.60 -26.93 16 18 C 0.70 24.32 8.06 179.06 1.44 25.76 16 19 O -0.61 -23.91 13.03 -4.00 -0.05 -23.96 16 20 N -0.61 -15.93 2.23 -835.54 -1.86 -17.79 16 21 C 0.11 2.49 5.17 87.38 0.45 2.94 16 22 C -0.13 -3.55 5.74 29.39 0.17 -3.38 16 23 C -0.11 -2.55 4.86 28.61 0.14 -2.41 16 24 C 0.11 2.54 3.08 29.77 0.09 2.63 16 25 H 0.02 0.73 7.49 -2.39 -0.02 0.71 16 26 O -0.58 -13.01 13.22 -148.98 -1.97 -14.98 16 27 C -0.15 -2.32 5.43 30.34 0.16 -2.15 16 28 C 0.13 2.54 6.14 86.60 0.53 3.08 16 29 H 0.27 13.93 8.31 -92.72 -0.77 13.16 16 30 H 0.14 6.09 5.64 -2.91 -0.02 6.07 16 31 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.15 5.51 6.19 -2.91 -0.02 5.49 16 33 H 0.41 15.39 6.16 -92.71 -0.57 14.82 16 34 H 0.07 1.75 6.18 -2.39 -0.01 1.74 16 35 H 0.12 1.82 8.06 -2.39 -0.02 1.80 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 1.41 8.06 -2.39 -0.02 1.39 16 39 H 0.09 1.65 7.35 -2.38 -0.02 1.64 16 40 H 0.39 5.36 8.95 -74.06 -0.66 4.70 16 41 H 0.11 1.19 7.90 -2.39 -0.02 1.17 16 42 H 0.09 1.16 7.31 -2.39 -0.02 1.14 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.79 6.95 -2.38 -0.02 1.78 16 Total: -1.00 -68.24 358.47 2.53 -65.71 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.16 Total: 40.95 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.28 Total: -0.81 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -3.16 Total: -94.05 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -2.23 Total: -49.99 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -68.24 2.53 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365166229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.551 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds