Wall clock time and date at job start Tue Mar 31 2020 20:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86805 * 120.00158 * 2 1 4 4 H 1.48493 * 109.47182 * 240.00091 * 3 2 1 5 5 H 1.48504 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47139 * 119.99961 * 3 2 1 7 7 C 1.38628 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00493 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.35777 * 117.00113 * 174.97725 * 9 7 2 11 11 C 1.38741 * 120.09050 * 5.18801 * 10 9 7 12 12 C 1.38343 * 119.97813 * 180.22687 * 11 10 9 13 13 F 1.35102 * 119.92101 * 179.79201 * 12 11 10 14 14 C 1.38542 * 120.15119 * 359.77790 * 12 11 10 15 15 C 1.38196 * 120.17548 * 0.02562 * 14 12 11 16 16 C 1.38690 * 120.02117 * 359.95800 * 15 14 12 17 17 N 1.40140 * 120.07845 * 179.97438 * 16 15 14 18 18 C 1.34782 * 119.99861 * 335.22302 * 17 16 15 19 19 O 1.21599 * 119.99416 * 354.28737 * 18 17 16 20 20 N 1.34768 * 120.00176 * 174.28507 * 18 17 16 21 21 C 1.44581 * 118.64195 * 359.97438 * 20 18 17 22 22 C 1.54868 * 109.60250 * 89.29863 * 21 20 18 23 23 C 1.47091 * 110.32162 * 71.25953 * 22 21 20 24 24 C 1.52721 * 114.23380 * 297.17160 * 23 22 21 25 25 H 1.09001 * 109.61313 * 325.17776 * 24 23 22 26 26 O 1.42902 * 109.45343 * 205.06239 * 24 23 22 27 27 C 1.50876 * 109.27461 * 85.16790 * 24 23 22 28 28 C 1.47609 * 118.64666 * 179.97438 * 20 18 17 29 29 H 0.97011 * 119.99976 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00805 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.90925 * 179.97438 * 14 12 11 32 32 H 1.07996 * 119.98929 * 179.97438 * 15 14 12 33 33 H 0.96998 * 120.00309 * 155.21463 * 17 16 15 34 34 H 1.08998 * 109.44983 * 209.33161 * 21 20 18 35 35 H 1.08996 * 109.45606 * 329.28400 * 21 20 18 36 36 H 1.08994 * 109.32844 * 191.52476 * 22 21 20 37 37 H 1.09002 * 109.32754 * 311.00396 * 22 21 20 38 38 H 1.09003 * 108.51475 * 58.46017 * 23 22 21 39 39 H 1.09002 * 108.51093 * 175.94292 * 23 22 21 40 40 H 0.96696 * 113.99803 * 180.24520 * 26 24 23 41 41 H 1.09001 * 109.36575 * 147.82462 * 27 24 23 42 42 H 1.08992 * 109.36777 * 28.08037 * 27 24 23 43 43 H 1.09006 * 108.94524 * 101.42130 * 28 20 18 44 44 H 1.08999 * 108.94577 * 342.80063 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0702 -3.5045 -0.1039 11 6 3.4561 -3.4393 -0.0981 12 6 4.2032 -4.5982 -0.2104 13 9 5.5526 -4.5330 -0.2089 14 6 3.5706 -5.8256 -0.3241 15 6 2.1906 -5.8983 -0.3264 16 6 1.4346 -4.7410 -0.2139 17 7 0.0351 -4.8133 -0.2167 18 6 -0.5847 -5.8552 -0.8056 19 8 0.0634 -6.6777 -1.4237 20 7 -1.9227 -5.9854 -0.7094 21 6 -2.6641 -4.9908 0.0331 22 6 -3.0796 -3.8382 -0.9141 23 6 -4.1311 -4.2901 -1.8380 24 6 -3.6997 -5.4148 -2.7768 25 1 -2.6524 -5.2831 -3.0486 26 8 -4.5060 -5.3858 -3.9563 27 6 -3.8758 -6.7409 -2.0791 28 6 -2.5706 -7.1376 -1.3663 29 1 -0.4851 0.8401 0.0004 30 1 3.9515 -2.4837 -0.0092 31 1 4.1577 -6.7279 -0.4119 32 1 1.7007 -6.8566 -0.4156 33 1 -0.4876 -4.1135 0.2052 34 1 -3.5562 -5.4479 0.4613 35 1 -2.0393 -4.5948 0.8336 36 1 -3.4535 -3.0024 -0.3229 37 1 -2.2117 -3.5116 -1.4872 38 1 -4.9827 -4.6346 -1.2514 39 1 -4.4515 -3.4398 -2.4401 40 1 -4.2897 -6.0764 -4.5976 41 1 -4.1330 -7.5043 -2.8134 42 1 -4.6781 -6.6598 -1.3458 43 1 -2.7942 -7.8942 -0.6140 44 1 -1.8823 -7.5610 -2.0978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365166230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:43 Heat of formation + Delta-G solvation = -113.436167 kcal Electronic energy + Delta-G solvation = -30310.833313 eV Core-core repulsion = 25950.970172 eV Total energy + Delta-G solvation = -4359.863141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.22458 -40.81251 -39.26489 -38.24394 -36.49771 -35.85064 -34.29017 -33.11764 -32.41146 -31.91344 -29.39482 -28.26629 -26.58193 -25.50824 -25.05036 -22.88291 -22.04425 -21.22251 -20.61739 -19.33330 -18.41552 -18.32863 -17.56400 -17.09634 -16.93020 -15.78442 -15.74199 -15.21642 -15.11142 -15.05614 -14.88880 -14.43579 -14.28372 -13.88234 -13.73089 -13.64801 -13.60763 -13.45695 -13.17421 -12.91178 -12.54613 -12.23333 -12.14854 -11.84561 -11.67233 -11.40117 -11.37008 -11.26581 -10.98774 -10.82314 -10.73038 -10.56641 -10.53510 -10.06925 -9.82075 -9.80535 -9.44951 -8.95299 -8.61492 -7.85452 -7.02967 -6.60098 -4.17381 1.86573 2.13370 2.74450 3.07224 3.08732 3.10577 3.37538 3.84564 3.99013 4.13042 4.38306 4.58576 4.70247 4.81876 4.85106 4.92720 4.98409 5.02305 5.13915 5.22301 5.31344 5.46241 5.56568 5.58769 5.66834 5.73793 5.75857 5.85710 5.97323 6.02891 6.04546 6.14106 6.20976 6.35470 6.52412 6.62803 6.71560 6.92008 6.93912 7.07589 7.11539 7.24929 7.53844 7.67589 7.83990 8.16381 8.77456 8.86351 9.46830 10.56919 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.004303 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.500890 B = 6505.089646 C = 8906.633070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.153 3.847 11 C -0.256 4.256 12 C 0.123 3.877 13 F -0.152 7.152 14 C -0.224 4.224 15 C -0.063 4.063 16 C 0.082 3.918 17 N -0.662 5.662 18 C 0.701 3.299 19 O -0.584 6.584 20 N -0.623 5.623 21 C 0.107 3.893 22 C -0.141 4.141 23 C -0.108 4.108 24 C 0.108 3.892 25 H 0.060 0.940 26 O -0.571 6.571 27 C -0.162 4.162 28 C 0.132 3.868 29 H 0.272 0.728 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.414 0.586 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.376 0.624 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -10.164 -0.703 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.098 3.902 11 C -0.277 4.277 12 C 0.103 3.897 13 F -0.131 7.131 14 C -0.244 4.244 15 C -0.083 4.083 16 C -0.013 4.013 17 N -0.310 5.310 18 C 0.404 3.596 19 O -0.463 6.463 20 N -0.360 5.360 21 C -0.017 4.017 22 C -0.180 4.180 23 C -0.145 4.145 24 C 0.049 3.951 25 H 0.078 0.922 26 O -0.377 6.377 27 C -0.200 4.200 28 C 0.009 3.991 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.166 0.834 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.223 0.777 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.246 -10.021 -0.783 13.001 hybrid contribution 0.714 0.866 -0.072 1.125 sum -7.532 -9.155 -0.855 11.885 Atomic orbital electron populations 1.69991 1.05862 1.28010 1.45529 1.25243 0.95909 0.98737 0.96199 0.85770 0.78772 0.79552 0.79375 1.19413 1.20214 1.19389 1.21272 0.91925 0.80373 1.53182 0.88942 1.83892 1.33896 1.11229 1.78442 1.18686 0.89492 0.86850 0.95212 1.20822 0.93349 0.98429 1.15089 1.17456 0.75929 0.94382 1.01888 1.91407 1.30170 1.97378 1.94159 1.20494 0.94628 0.95805 1.13518 1.20800 0.92168 0.97578 0.97783 1.16732 0.81340 0.91345 1.11905 1.42473 1.05311 1.24920 1.58250 1.15894 0.81779 0.82356 0.79619 1.90830 1.64001 1.44601 1.46864 1.46903 1.04946 1.27671 1.56447 1.21618 0.97172 0.89056 0.93902 1.21277 1.00031 0.98236 0.98435 1.20342 0.98876 0.98393 0.96934 1.21296 0.94367 0.94247 0.85174 0.92203 1.86510 1.62497 1.57887 1.30779 1.22554 0.98050 0.98546 1.00891 1.21591 0.93888 0.86504 0.97121 0.91846 0.83984 0.86005 0.83382 0.74808 0.90065 0.90207 0.89445 0.90648 0.91890 0.91091 0.77718 0.90084 0.90878 0.91883 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.95 13.67 55.48 0.76 -22.20 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.57 29.55 -169.99 -5.02 14.54 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.21 9.49 30.88 0.29 -9.92 16 8 H 0.09 2.28 5.20 -52.48 -0.27 2.00 16 9 O -0.17 -4.41 9.18 0.02 0.00 -4.41 16 10 C 0.15 3.52 6.66 -38.94 -0.26 3.26 16 11 C -0.26 -5.59 9.14 -39.36 -0.36 -5.95 16 12 C 0.12 2.48 7.29 -39.43 -0.29 2.19 16 13 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 14 C -0.22 -4.20 10.02 -39.48 -0.40 -4.59 16 15 C -0.06 -1.22 8.71 -39.43 -0.34 -1.56 16 16 C 0.08 1.71 6.45 -83.43 -0.54 1.17 16 17 N -0.66 -12.27 5.08 -14.07 -0.07 -12.34 16 18 C 0.70 12.07 8.02 -86.92 -0.70 11.37 16 19 O -0.58 -11.39 12.79 5.28 0.07 -11.32 16 20 N -0.62 -8.21 2.23 -178.28 -0.40 -8.61 16 21 C 0.11 1.22 5.10 -4.08 -0.02 1.20 16 22 C -0.14 -1.76 5.71 -28.58 -0.16 -1.93 16 23 C -0.11 -1.26 4.86 -29.71 -0.14 -1.40 16 24 C 0.11 1.23 3.08 -27.94 -0.09 1.15 16 25 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 26 O -0.57 -6.47 13.22 -35.23 -0.47 -6.94 16 27 C -0.16 -1.46 5.43 -27.32 -0.15 -1.61 16 28 C 0.13 1.42 6.09 -2.96 -0.02 1.41 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.14 3.09 5.63 -52.48 -0.30 2.79 16 31 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.15 2.82 5.79 -52.49 -0.30 2.51 16 33 H 0.41 7.47 6.04 -40.82 -0.25 7.22 16 34 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.08 0.95 6.32 -51.93 -0.33 0.63 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.64 7.36 -51.93 -0.38 0.25 16 39 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 40 H 0.38 2.72 8.94 45.56 0.41 3.12 16 41 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 42 H 0.07 0.61 7.31 -51.93 -0.38 0.23 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.14 6.95 -51.93 -0.36 0.78 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -30.28 357.70 -7.59 -37.87 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -4.62 Total: 15.07 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -3.27 Total: -4.17 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.29 Total: -43.14 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.40 Total: -22.67 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.28 -7.59 -37.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365166230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.562 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds