Wall clock time and date at job start Tue Mar 31 2020 20:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86805 * 120.00158 * 2 1 4 4 H 1.48493 * 109.47182 * 240.00091 * 3 2 1 5 5 H 1.48504 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47139 * 119.99961 * 3 2 1 7 7 C 1.38628 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00493 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.35777 * 117.00113 * 174.97725 * 9 7 2 11 11 C 1.38741 * 120.09050 * 5.18801 * 10 9 7 12 12 C 1.38343 * 119.97813 * 180.22687 * 11 10 9 13 13 F 1.35102 * 119.92101 * 179.79201 * 12 11 10 14 14 C 1.38542 * 120.15119 * 359.77790 * 12 11 10 15 15 C 1.38196 * 120.17548 * 0.02562 * 14 12 11 16 16 C 1.38690 * 120.02117 * 359.95800 * 15 14 12 17 17 N 1.40140 * 120.07845 * 179.97438 * 16 15 14 18 18 C 1.34782 * 119.99861 * 335.22302 * 17 16 15 19 19 O 1.21599 * 119.99416 * 354.28737 * 18 17 16 20 20 N 1.34768 * 120.00176 * 174.28507 * 18 17 16 21 21 C 1.44581 * 118.64195 * 359.97438 * 20 18 17 22 22 C 1.54868 * 109.60250 * 89.29863 * 21 20 18 23 23 C 1.47091 * 110.32162 * 71.25953 * 22 21 20 24 24 C 1.52721 * 114.23380 * 297.17160 * 23 22 21 25 25 H 1.09001 * 109.61313 * 325.17776 * 24 23 22 26 26 O 1.42902 * 109.45343 * 205.06239 * 24 23 22 27 27 C 1.50876 * 109.27461 * 85.16790 * 24 23 22 28 28 C 1.47609 * 118.64666 * 179.97438 * 20 18 17 29 29 H 0.97011 * 119.99976 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00805 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.90925 * 179.97438 * 14 12 11 32 32 H 1.07996 * 119.98929 * 179.97438 * 15 14 12 33 33 H 0.96998 * 120.00309 * 155.21463 * 17 16 15 34 34 H 1.08998 * 109.44983 * 209.33161 * 21 20 18 35 35 H 1.08996 * 109.45606 * 329.28400 * 21 20 18 36 36 H 1.08994 * 109.32844 * 191.52476 * 22 21 20 37 37 H 1.09002 * 109.32754 * 311.00396 * 22 21 20 38 38 H 1.09003 * 108.51475 * 58.46017 * 23 22 21 39 39 H 1.09002 * 108.51093 * 175.94292 * 23 22 21 40 40 H 0.96696 * 113.99803 * 180.24520 * 26 24 23 41 41 H 1.09001 * 109.36575 * 147.82462 * 27 24 23 42 42 H 1.08992 * 109.36777 * 28.08037 * 27 24 23 43 43 H 1.09006 * 108.94524 * 101.42130 * 28 20 18 44 44 H 1.08999 * 108.94577 * 342.80063 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0702 -3.5045 -0.1039 11 6 3.4561 -3.4393 -0.0981 12 6 4.2032 -4.5982 -0.2104 13 9 5.5526 -4.5330 -0.2089 14 6 3.5706 -5.8256 -0.3241 15 6 2.1906 -5.8983 -0.3264 16 6 1.4346 -4.7410 -0.2139 17 7 0.0351 -4.8133 -0.2167 18 6 -0.5847 -5.8552 -0.8056 19 8 0.0634 -6.6777 -1.4237 20 7 -1.9227 -5.9854 -0.7094 21 6 -2.6641 -4.9908 0.0331 22 6 -3.0796 -3.8382 -0.9141 23 6 -4.1311 -4.2901 -1.8380 24 6 -3.6997 -5.4148 -2.7768 25 1 -2.6524 -5.2831 -3.0486 26 8 -4.5060 -5.3858 -3.9563 27 6 -3.8758 -6.7409 -2.0791 28 6 -2.5706 -7.1376 -1.3663 29 1 -0.4851 0.8401 0.0004 30 1 3.9515 -2.4837 -0.0092 31 1 4.1577 -6.7279 -0.4119 32 1 1.7007 -6.8566 -0.4156 33 1 -0.4876 -4.1135 0.2052 34 1 -3.5562 -5.4479 0.4613 35 1 -2.0393 -4.5948 0.8336 36 1 -3.4535 -3.0024 -0.3229 37 1 -2.2117 -3.5116 -1.4872 38 1 -4.9827 -4.6346 -1.2514 39 1 -4.4515 -3.4398 -2.4401 40 1 -4.2897 -6.0764 -4.5976 41 1 -4.1330 -7.5043 -2.8134 42 1 -4.6781 -6.6598 -1.3458 43 1 -2.7942 -7.8942 -0.6140 44 1 -1.8823 -7.5610 -2.0978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365166230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:42 Heat of formation + Delta-G solvation = -133.227357 kcal Electronic energy + Delta-G solvation = -30311.691524 eV Core-core repulsion = 25950.970172 eV Total energy + Delta-G solvation = -4360.721351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.81248 -42.13354 -40.76632 -39.48237 -38.06564 -37.01100 -35.72976 -34.30409 -34.17103 -32.89208 -31.06701 -29.82733 -27.65384 -27.35196 -26.02106 -24.32192 -23.58823 -22.61839 -21.56382 -20.59986 -20.13812 -19.78129 -19.01993 -18.36491 -18.10225 -17.19332 -17.01471 -16.86710 -16.58573 -16.49010 -16.04211 -15.96629 -15.64306 -15.48027 -15.25862 -14.97586 -14.73322 -14.67349 -14.52330 -14.00038 -13.92274 -13.68073 -13.47929 -13.38286 -13.07887 -12.74136 -12.57937 -12.35910 -12.32486 -12.20332 -12.15985 -11.79439 -11.65510 -11.48154 -11.29924 -10.98070 -10.93214 -10.80135 -9.74880 -9.52026 -8.66537 -8.49770 -6.15124 0.22086 0.46657 1.36961 1.45186 1.50004 1.52619 1.97838 2.14198 2.70886 2.78810 3.03463 3.18254 3.21542 3.46778 3.69332 3.83584 3.91634 3.93836 4.05050 4.10175 4.16175 4.30725 4.35461 4.40260 4.53765 4.60943 4.67848 4.84386 4.85268 4.90896 4.96591 4.99501 5.09725 5.13659 5.20974 5.23087 5.28993 5.33247 5.35601 5.53321 5.63373 5.82010 5.94236 6.07264 6.78531 6.84916 6.94757 7.38573 7.63395 8.70223 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.004303 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.500890 B = 6505.089646 C = 8906.633070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.007 4.007 3 Si 1.008 2.992 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.098 0.902 9 O -0.203 6.203 10 C 0.126 3.874 11 C -0.261 4.261 12 C 0.117 3.883 13 F -0.145 7.145 14 C -0.199 4.199 15 C -0.063 4.063 16 C 0.082 3.918 17 N -0.666 5.666 18 C 0.697 3.303 19 O -0.609 6.609 20 N -0.611 5.611 21 C 0.107 3.893 22 C -0.134 4.134 23 C -0.107 4.107 24 C 0.110 3.890 25 H 0.026 0.974 26 O -0.584 6.584 27 C -0.149 4.149 28 C 0.128 3.872 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.413 0.587 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.032 0.968 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.393 0.607 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 -11.960 -0.397 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.115 0.885 9 O -0.109 6.109 10 C 0.072 3.928 11 C -0.282 4.282 12 C 0.097 3.903 13 F -0.124 7.124 14 C -0.219 4.219 15 C -0.084 4.084 16 C -0.014 4.014 17 N -0.313 5.313 18 C 0.399 3.601 19 O -0.490 6.490 20 N -0.347 5.347 21 C -0.017 4.017 22 C -0.173 4.173 23 C -0.145 4.145 24 C 0.051 3.949 25 H 0.044 0.956 26 O -0.392 6.392 27 C -0.187 4.187 28 C 0.006 3.994 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.251 0.749 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.243 0.757 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.878 -11.872 -0.486 14.833 hybrid contribution 0.926 1.197 -0.231 1.531 sum -7.952 -10.675 -0.717 13.331 Atomic orbital electron populations 1.70106 1.07369 1.28907 1.47377 1.26316 0.96850 1.01911 0.95584 0.84780 0.77604 0.75068 0.79688 1.18921 1.19452 1.18325 1.21666 0.92455 0.81115 1.53978 0.88505 1.83875 1.34633 1.11748 1.80630 1.19037 0.90171 0.87002 0.96572 1.20903 0.93245 0.99083 1.14975 1.17446 0.76227 0.94274 1.02396 1.91424 1.29495 1.97352 1.94128 1.20884 0.94505 0.96474 1.10056 1.20991 0.92514 0.97368 0.97529 1.17010 0.82671 0.91098 1.10582 1.42521 1.04652 1.25503 1.58670 1.16070 0.83124 0.81621 0.79246 1.90792 1.65028 1.45285 1.47872 1.47020 1.03525 1.28318 1.55844 1.21755 0.98236 0.88530 0.93144 1.21184 0.98661 0.98935 0.98479 1.20342 0.99168 0.98068 0.96888 1.21198 0.92497 0.95693 0.85532 0.95605 1.86475 1.62297 1.59172 1.31273 1.22474 0.97345 0.97432 1.01442 1.21836 0.94113 0.85933 0.97490 0.91685 0.84611 0.82493 0.82378 0.74860 0.86134 0.90933 0.89152 0.94935 0.89218 0.92852 0.75730 0.87654 0.88912 0.89320 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.15 13.67 21.61 0.30 -49.85 16 2 C -0.01 -0.35 5.49 84.83 0.47 0.12 16 3 Si 1.01 40.81 29.55 68.60 2.03 42.83 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.42 -22.65 9.49 67.91 0.64 -22.01 16 8 H 0.10 4.97 5.20 -2.91 -0.02 4.95 16 9 O -0.20 -11.03 9.18 -22.84 -0.21 -11.24 16 10 C 0.13 5.98 6.66 22.69 0.15 6.13 16 11 C -0.26 -11.61 9.14 22.42 0.20 -11.40 16 12 C 0.12 4.57 7.29 22.37 0.16 4.73 16 13 F -0.15 -5.36 17.26 44.97 0.78 -4.59 16 14 C -0.20 -7.05 10.02 22.33 0.22 -6.82 16 15 C -0.06 -2.40 8.71 22.37 0.19 -2.20 16 16 C 0.08 3.49 6.45 38.22 0.25 3.74 16 17 N -0.67 -25.42 5.08 -316.69 -1.61 -27.03 16 18 C 0.70 24.08 8.02 179.06 1.44 25.51 16 19 O -0.61 -23.59 12.79 -4.03 -0.05 -23.64 16 20 N -0.61 -15.55 2.23 -836.21 -1.87 -17.42 16 21 C 0.11 2.33 5.10 87.38 0.45 2.78 16 22 C -0.13 -3.41 5.71 29.40 0.17 -3.24 16 23 C -0.11 -2.41 4.86 28.66 0.14 -2.27 16 24 C 0.11 2.40 3.08 29.81 0.09 2.49 16 25 H 0.03 0.74 7.48 -2.39 -0.02 0.72 16 26 O -0.58 -12.46 13.22 -148.98 -1.97 -14.43 16 27 C -0.15 -2.22 5.43 30.21 0.16 -2.05 16 28 C 0.13 2.47 6.09 86.48 0.53 2.99 16 29 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 30 H 0.14 6.10 5.63 -2.91 -0.02 6.09 16 31 H 0.16 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.16 5.77 5.79 -2.91 -0.02 5.76 16 33 H 0.41 15.73 6.04 -92.71 -0.56 15.17 16 34 H 0.12 1.76 8.07 -2.39 -0.02 1.74 16 35 H 0.07 1.73 6.32 -2.39 -0.02 1.71 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.55 7.36 -2.39 -0.02 1.54 16 39 H 0.05 1.38 8.06 -2.39 -0.02 1.36 16 40 H 0.39 5.04 8.94 -74.06 -0.66 4.38 16 41 H 0.11 1.13 7.90 -2.39 -0.02 1.11 16 42 H 0.09 1.10 7.31 -2.39 -0.02 1.09 16 43 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.08 1.76 6.95 -2.39 -0.02 1.75 16 Total: -1.00 -68.33 357.70 2.51 -65.82 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.14 Total: 41.06 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 5.27 Total: -1.51 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.18 Total: -94.30 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -2.23 Total: -49.31 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -68.33 2.51 -65.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365166230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.407 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds