Wall clock time and date at job start Tue Mar 31 2020 22:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30297 * 126.35061 * 2 1 4 4 N 1.28523 * 110.05361 * 180.02562 * 3 2 1 5 5 C 1.31216 * 109.86272 * 359.97438 * 4 3 2 6 6 N 1.38579 * 126.47135 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00131 * 57.39324 * 6 5 4 8 8 C 1.46904 * 111.00096 * 293.43791 * 6 5 4 9 9 H 1.09000 * 109.46584 * 309.99794 * 8 6 5 10 10 C 1.52996 * 109.47246 * 70.00279 * 8 6 5 11 11 C 1.50701 * 109.47120 * 190.00649 * 8 6 5 12 12 H 1.08007 * 120.00273 * 359.97438 * 11 8 6 13 13 C 1.37879 * 119.99941 * 180.02562 * 11 8 6 14 14 N 1.31512 * 119.99875 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99859 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47561 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47230 * 119.99820 * 15 13 11 18 18 H 1.48498 * 109.47089 * 239.99708 * 15 13 11 19 19 N 1.36449 * 107.05208 * 0.22701 * 5 4 3 20 20 C 1.46508 * 127.13247 * 179.77378 * 19 5 4 21 21 C 1.52995 * 109.46949 * 93.26013 * 20 19 5 22 22 N 1.46502 * 109.47071 * 175.47611 * 21 20 19 23 23 C 1.35045 * 126.03918 * 124.99563 * 22 21 20 24 24 C 1.35363 * 107.73042 * 179.97438 * 23 22 21 25 25 Cl 1.73602 * 126.04861 * 179.97438 * 24 23 22 26 26 C 1.39929 * 107.90941 * 359.97438 * 24 23 22 27 27 N 1.30850 * 108.21257 * 359.75910 * 26 24 23 28 28 H 1.08994 * 109.47043 * 89.97145 * 1 2 3 29 29 H 1.08996 * 109.46799 * 209.97360 * 1 2 3 30 30 H 1.08997 * 109.46800 * 329.97073 * 1 2 3 31 31 H 1.08994 * 109.46910 * 302.73837 * 7 6 5 32 32 H 1.08994 * 109.47122 * 62.74352 * 7 6 5 33 33 H 1.09004 * 109.46795 * 182.73989 * 7 6 5 34 34 H 1.08995 * 109.46909 * 59.99903 * 10 8 6 35 35 H 1.09000 * 109.46798 * 300.00522 * 10 8 6 36 36 H 1.08992 * 109.47242 * 180.02562 * 10 8 6 37 37 H 0.96999 * 119.99885 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46529 * 213.25241 * 20 19 5 39 39 H 1.08994 * 109.47572 * 333.25353 * 20 19 5 40 40 H 1.09000 * 109.47187 * 295.47281 * 21 20 19 41 41 H 1.09001 * 109.47770 * 55.47249 * 21 20 19 42 42 H 1.08004 * 126.13415 * 359.94539 * 23 22 21 43 43 H 1.07998 * 125.89753 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5945 -0.6209 -0.0004 6 7 4.7580 -1.3737 -0.0013 7 6 5.6025 -1.0390 1.1531 8 6 5.4952 -1.2020 -1.2603 9 1 4.8180 -1.3520 -2.1012 10 6 6.0786 0.2111 -1.3210 11 6 6.6129 -2.2104 -1.3296 12 1 6.7611 -2.9089 -0.5191 13 6 7.4470 -2.2409 -2.4271 14 7 7.2668 -1.3901 -3.4136 15 14 8.8328 -3.4904 -2.5125 16 1 8.8223 -4.3262 -1.2851 17 1 8.6451 -4.3571 -3.7037 18 1 10.1332 -2.7810 -2.6165 19 7 2.3174 -1.1013 -0.0048 20 6 1.9010 -2.5060 -0.0110 21 6 1.6744 -2.9770 1.4269 22 7 1.1548 -4.3467 1.4159 23 6 1.6890 -5.4044 2.0637 24 6 0.9151 -6.4832 1.7999 25 17 1.1709 -8.0940 2.3947 26 6 -0.1277 -6.0704 0.9631 27 7 0.0121 -4.7892 0.7370 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 5.8294 0.0270 1.1404 32 1 5.0745 -1.2872 2.0737 33 1 6.5305 -1.6087 1.1017 34 1 6.7558 0.3609 -0.4802 35 1 5.2702 0.9404 -1.2709 36 1 6.6252 0.3386 -2.2554 37 1 7.8533 -1.4118 -4.1859 38 1 0.9749 -2.6078 -0.5768 39 1 2.6784 -3.1135 -0.4741 40 1 2.6186 -2.9510 1.9708 41 1 0.9554 -2.3195 1.9157 42 1 2.5751 -5.3919 2.6810 43 1 -0.9143 -6.6999 0.5740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381605925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:42 Heat of formation + Delta-G solvation = 173.748565 kcal Electronic energy + Delta-G solvation = -27315.474811 eV Core-core repulsion = 23460.986811 eV Total energy + Delta-G solvation = -3854.487999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66922 -41.55735 -37.33686 -36.71981 -35.96116 -33.14559 -33.01875 -31.51825 -30.47815 -28.95663 -28.53359 -27.16755 -25.45903 -25.12647 -24.50173 -21.63133 -21.55497 -21.29130 -20.47708 -19.57376 -17.89612 -16.77863 -16.39137 -15.99800 -15.73328 -15.50618 -15.00375 -14.64365 -14.50818 -14.41833 -13.79347 -13.73193 -13.58351 -13.24952 -13.16879 -12.67964 -12.59512 -12.40055 -12.13703 -11.81232 -11.64134 -11.54923 -11.37507 -11.25170 -10.99766 -10.82564 -10.78268 -10.61303 -10.29838 -10.19669 -10.13803 -9.97130 -9.75723 -8.97647 -8.72951 -8.54917 -8.50061 -7.84703 -6.12797 -4.19666 1.37151 1.57151 2.02364 2.28765 2.34772 2.69609 3.20973 3.22856 3.31292 3.34045 4.04993 4.27293 4.36549 4.42985 4.51772 4.55766 4.60954 4.81396 4.86517 5.05417 5.19345 5.23530 5.30050 5.40328 5.47941 5.62887 5.71812 5.86031 6.01709 6.06073 6.25202 6.32561 6.42700 6.50285 6.74074 6.90259 6.98377 7.11522 7.18784 7.41601 7.55658 7.68677 7.85607 8.18847 8.36823 8.83771 9.12635 9.45693 10.93872 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.003843 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.514173 B = 7284.981494 C = 9881.609539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.159 3.841 3 N -0.291 5.291 4 N -0.310 5.310 5 C 0.377 3.623 6 N -0.472 5.472 7 C 0.046 3.954 8 C 0.226 3.774 9 H 0.035 0.965 10 C -0.175 4.175 11 C -0.508 4.508 12 H 0.066 0.934 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 N -0.473 5.473 20 C 0.107 3.893 21 C 0.127 3.873 22 N -0.360 5.360 23 C 0.085 3.915 24 C -0.190 4.190 25 Cl -0.043 7.043 26 C 0.068 3.932 27 N -0.282 5.282 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.087 0.913 37 H 0.262 0.738 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.186 0.814 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.793 -7.905 11.321 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.132 5.132 4 N -0.152 5.152 5 C 0.021 3.979 6 N -0.198 5.198 7 C -0.102 4.102 8 C 0.121 3.879 9 H 0.053 0.947 10 C -0.234 4.234 11 C -0.547 4.547 12 H 0.084 0.916 13 C -0.140 4.140 14 N -0.526 5.526 15 Si 0.728 3.272 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.169 5.169 20 C -0.018 4.018 21 C 0.005 3.995 22 N -0.142 5.142 23 C -0.063 4.063 24 C -0.229 4.229 25 Cl -0.015 7.015 26 C -0.119 4.119 27 N -0.103 5.103 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.203 0.797 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.799 -5.846 10.626 19.134 hybrid contribution 1.082 -2.188 0.151 2.446 sum -13.718 -8.035 10.777 19.206 Atomic orbital electron populations 1.20136 0.84108 1.03925 1.03810 1.24718 0.96377 0.82763 1.06938 1.73991 0.97084 1.24184 1.17910 1.74775 1.10995 1.08730 1.20711 1.23003 0.86163 0.88421 1.00281 1.59474 1.02523 1.49947 1.07874 1.22242 0.97368 1.00823 0.89760 1.19404 0.91966 0.94129 0.82361 0.94746 1.22448 1.00347 0.97562 1.03036 1.21006 1.12525 1.16415 1.04712 0.91629 1.24913 0.97675 0.95947 0.95445 1.69916 1.38661 1.35930 1.08062 0.86412 0.81711 0.81037 0.78076 1.19657 1.21004 1.20954 1.46218 1.06807 1.07206 1.56625 1.21889 1.03983 0.79600 0.96343 1.22081 1.00807 0.77974 0.98666 1.48273 1.20343 1.08006 1.37626 1.22344 0.99488 0.86259 0.98242 1.20747 1.02738 0.88316 1.11052 1.98334 1.96519 1.19295 1.87368 1.23894 0.98656 0.92350 0.97029 1.77462 1.02568 1.12114 1.18125 0.89917 0.90857 0.88949 0.93925 0.93890 0.89199 0.94900 0.94548 0.89474 0.92781 0.87862 0.86752 0.87089 0.88944 0.79742 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.15 36.01 0.37 -0.23 16 2 C 0.16 2.43 8.07 -154.01 -1.24 1.19 16 3 N -0.29 -5.61 12.18 32.99 0.40 -5.21 16 4 N -0.31 -6.58 9.89 30.31 0.30 -6.28 16 5 C 0.38 7.34 6.27 -318.88 -2.00 5.34 16 6 N -0.47 -9.60 4.73 -176.09 -0.83 -10.44 16 7 C 0.05 0.84 8.57 60.06 0.52 1.35 16 8 C 0.23 5.53 2.28 -68.86 -0.16 5.37 16 9 H 0.03 0.96 8.05 -51.93 -0.42 0.54 16 10 C -0.17 -4.34 8.16 37.16 0.30 -4.04 16 11 C -0.51 -13.09 7.87 -34.44 -0.27 -13.36 16 12 H 0.07 1.65 7.15 -52.48 -0.37 1.28 16 13 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 14 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 15 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 N -0.47 -7.40 2.81 -114.08 -0.32 -7.72 16 20 C 0.11 1.32 6.07 -4.04 -0.02 1.29 16 21 C 0.13 1.24 6.83 -4.04 -0.03 1.21 16 22 N -0.36 -3.68 3.68 -61.33 -0.23 -3.91 16 23 C 0.08 0.79 11.43 -17.16 -0.20 0.60 16 24 C -0.19 -1.84 6.65 -39.97 -0.27 -2.10 16 25 Cl -0.04 -0.39 29.30 -51.86 -1.52 -1.91 16 26 C 0.07 0.64 12.02 -17.34 -0.21 0.44 16 27 N -0.28 -3.09 12.36 30.64 0.38 -2.72 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.58 7.97 -51.93 -0.41 0.16 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.83 6.48 -51.93 -0.34 0.49 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.69 6.70 -51.93 -0.35 1.34 16 34 H 0.03 0.78 6.48 -51.93 -0.34 0.44 16 35 H 0.04 0.90 6.00 -51.93 -0.31 0.58 16 36 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.10 1.17 7.95 -51.93 -0.41 0.75 16 39 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.11 1.04 8.07 -51.93 -0.42 0.62 16 41 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 42 H 0.19 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -31.53 372.85 -9.68 -41.20 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.78 Total: 1.38 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.30 Total: -1.38 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.33 Total: -60.37 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.52 Total: -1.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.53 -9.68 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381605925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.953 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds