Wall clock time and date at job start Tue Mar 31 2020 22:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30297 * 126.35061 * 2 1 4 4 N 1.28523 * 110.05361 * 180.02562 * 3 2 1 5 5 C 1.31216 * 109.86272 * 359.97438 * 4 3 2 6 6 N 1.38579 * 126.47135 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00131 * 57.39324 * 6 5 4 8 8 C 1.46904 * 111.00096 * 293.43791 * 6 5 4 9 9 H 1.09000 * 109.46584 * 309.99794 * 8 6 5 10 10 C 1.52996 * 109.47246 * 70.00279 * 8 6 5 11 11 C 1.50701 * 109.47120 * 190.00649 * 8 6 5 12 12 H 1.08007 * 120.00273 * 359.97438 * 11 8 6 13 13 C 1.37879 * 119.99941 * 180.02562 * 11 8 6 14 14 N 1.31512 * 119.99875 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99859 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47561 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47230 * 119.99820 * 15 13 11 18 18 H 1.48498 * 109.47089 * 239.99708 * 15 13 11 19 19 N 1.36449 * 107.05208 * 0.22701 * 5 4 3 20 20 C 1.46508 * 127.13247 * 179.77378 * 19 5 4 21 21 C 1.52995 * 109.46949 * 93.26013 * 20 19 5 22 22 N 1.46502 * 109.47071 * 175.47611 * 21 20 19 23 23 C 1.35045 * 126.03918 * 124.99563 * 22 21 20 24 24 C 1.35363 * 107.73042 * 179.97438 * 23 22 21 25 25 Cl 1.73602 * 126.04861 * 179.97438 * 24 23 22 26 26 C 1.39929 * 107.90941 * 359.97438 * 24 23 22 27 27 N 1.30850 * 108.21257 * 359.75910 * 26 24 23 28 28 H 1.08994 * 109.47043 * 89.97145 * 1 2 3 29 29 H 1.08996 * 109.46799 * 209.97360 * 1 2 3 30 30 H 1.08997 * 109.46800 * 329.97073 * 1 2 3 31 31 H 1.08994 * 109.46910 * 302.73837 * 7 6 5 32 32 H 1.08994 * 109.47122 * 62.74352 * 7 6 5 33 33 H 1.09004 * 109.46795 * 182.73989 * 7 6 5 34 34 H 1.08995 * 109.46909 * 59.99903 * 10 8 6 35 35 H 1.09000 * 109.46798 * 300.00522 * 10 8 6 36 36 H 1.08992 * 109.47242 * 180.02562 * 10 8 6 37 37 H 0.96999 * 119.99885 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46529 * 213.25241 * 20 19 5 39 39 H 1.08994 * 109.47572 * 333.25353 * 20 19 5 40 40 H 1.09000 * 109.47187 * 295.47281 * 21 20 19 41 41 H 1.09001 * 109.47770 * 55.47249 * 21 20 19 42 42 H 1.08004 * 126.13415 * 359.94539 * 23 22 21 43 43 H 1.07998 * 125.89753 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5945 -0.6209 -0.0004 6 7 4.7580 -1.3737 -0.0013 7 6 5.6025 -1.0390 1.1531 8 6 5.4952 -1.2020 -1.2603 9 1 4.8180 -1.3520 -2.1012 10 6 6.0786 0.2111 -1.3210 11 6 6.6129 -2.2104 -1.3296 12 1 6.7611 -2.9089 -0.5191 13 6 7.4470 -2.2409 -2.4271 14 7 7.2668 -1.3901 -3.4136 15 14 8.8328 -3.4904 -2.5125 16 1 8.8223 -4.3262 -1.2851 17 1 8.6451 -4.3571 -3.7037 18 1 10.1332 -2.7810 -2.6165 19 7 2.3174 -1.1013 -0.0048 20 6 1.9010 -2.5060 -0.0110 21 6 1.6744 -2.9770 1.4269 22 7 1.1548 -4.3467 1.4159 23 6 1.6890 -5.4044 2.0637 24 6 0.9151 -6.4832 1.7999 25 17 1.1709 -8.0940 2.3947 26 6 -0.1277 -6.0704 0.9631 27 7 0.0121 -4.7892 0.7370 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 5.8294 0.0270 1.1404 32 1 5.0745 -1.2872 2.0737 33 1 6.5305 -1.6087 1.1017 34 1 6.7558 0.3609 -0.4802 35 1 5.2702 0.9404 -1.2709 36 1 6.6252 0.3386 -2.2554 37 1 7.8533 -1.4118 -4.1859 38 1 0.9749 -2.6078 -0.5768 39 1 2.6784 -3.1135 -0.4741 40 1 2.6186 -2.9510 1.9708 41 1 0.9554 -2.3195 1.9157 42 1 2.5751 -5.3919 2.6810 43 1 -0.9143 -6.6999 0.5740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381605925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:41 Heat of formation + Delta-G solvation = 156.734958 kcal Electronic energy + Delta-G solvation = -27316.212576 eV Core-core repulsion = 23460.986811 eV Total energy + Delta-G solvation = -3855.225765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.132 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.02988 -42.28609 -39.03093 -37.47617 -36.99408 -34.92440 -34.09723 -32.75484 -31.26204 -30.71523 -29.54526 -28.42176 -27.30312 -26.84637 -25.45226 -23.26348 -22.32599 -22.13631 -21.64177 -21.12806 -18.72336 -18.43055 -17.83252 -17.47227 -17.00304 -16.58470 -16.46938 -15.80888 -15.45012 -15.36325 -15.29611 -14.82282 -14.71408 -14.31995 -14.19605 -14.05947 -13.65418 -13.48301 -13.36872 -13.05956 -13.03116 -12.90003 -12.74368 -12.58140 -12.56153 -12.37865 -12.36534 -12.13847 -12.02372 -11.56316 -11.50119 -11.30870 -10.93103 -10.59719 -10.55066 -9.96376 -9.51562 -9.45757 -8.15409 -6.29085 0.56519 0.74877 0.81199 1.33595 1.43380 1.45706 1.56870 1.58057 1.79483 1.82179 2.40684 2.98284 3.15351 3.27941 3.42605 3.47544 3.73594 3.86741 4.00813 4.04572 4.14000 4.17854 4.40216 4.53993 4.58254 4.61033 4.65123 4.66527 4.71087 4.90697 4.92482 5.01387 5.03503 5.08919 5.12115 5.34756 5.39692 5.61144 5.62330 5.70933 5.82057 6.00705 6.18862 6.46128 6.59222 6.81354 7.40519 7.72769 8.91581 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.003843 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.514173 B = 7284.981494 C = 9881.609539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.183 3.817 3 N -0.334 5.334 4 N -0.345 5.345 5 C 0.356 3.644 6 N -0.464 5.464 7 C 0.049 3.951 8 C 0.238 3.762 9 H -0.008 1.008 10 C -0.158 4.158 11 C -0.513 4.513 12 H 0.073 0.927 13 C 0.013 3.987 14 N -0.922 5.922 15 Si 0.966 3.034 16 H -0.259 1.259 17 H -0.285 1.285 18 H -0.283 1.283 19 N -0.467 5.467 20 C 0.110 3.890 21 C 0.137 3.863 22 N -0.366 5.366 23 C 0.082 3.918 24 C -0.201 4.201 25 Cl -0.041 7.041 26 C 0.068 3.932 27 N -0.305 5.305 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.262 0.738 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.206 0.794 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.044 -9.533 12.878 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 N -0.174 5.174 4 N -0.187 5.187 5 C -0.001 4.001 6 N -0.190 5.190 7 C -0.098 4.098 8 C 0.132 3.868 9 H 0.010 0.990 10 C -0.217 4.217 11 C -0.552 4.552 12 H 0.091 0.909 13 C -0.186 4.186 14 N -0.561 5.561 15 Si 0.791 3.209 16 H -0.182 1.182 17 H -0.211 1.211 18 H -0.209 1.209 19 N -0.161 5.161 20 C -0.014 4.014 21 C 0.015 3.985 22 N -0.148 5.148 23 C -0.065 4.065 24 C -0.240 4.240 25 Cl -0.013 7.013 26 C -0.119 4.119 27 N -0.126 5.126 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.223 0.777 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.076 -7.491 12.212 21.533 hybrid contribution 1.330 -1.692 -0.329 2.177 sum -14.746 -9.183 11.884 21.048 Atomic orbital electron populations 1.20449 0.79958 1.06078 1.05366 1.25739 0.98200 0.81563 1.02958 1.73916 0.96845 1.25958 1.20637 1.74630 1.12578 1.09909 1.21555 1.22872 0.86910 0.88303 1.02057 1.59328 1.02783 1.50214 1.06652 1.22263 0.97460 0.99718 0.90363 1.19016 0.91167 0.93455 0.83204 0.98981 1.22247 0.99805 0.98067 1.01576 1.21276 1.12611 1.16504 1.04792 0.90934 1.25749 1.00086 0.97677 0.95106 1.70064 1.39744 1.37642 1.08686 0.85382 0.78481 0.78693 0.78332 1.18233 1.21064 1.20891 1.46321 1.05523 1.08611 1.55690 1.21993 1.03507 0.77397 0.98502 1.21970 1.01678 0.78235 0.96605 1.48277 1.20410 1.08167 1.37978 1.22759 0.99883 0.85907 0.97970 1.20891 1.03083 0.88589 1.11400 1.98334 1.96518 1.19082 1.87343 1.24332 0.98982 0.92185 0.96419 1.77425 1.03250 1.12870 1.19047 0.88466 0.88081 0.87399 0.95461 0.90479 0.89648 0.94425 0.95050 0.92252 0.92889 0.86488 0.89077 0.86503 0.87300 0.77700 0.76923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.15 71.24 0.72 -0.26 16 2 C 0.18 5.32 8.07 137.64 1.11 6.44 16 3 N -0.33 -12.80 12.18 -49.53 -0.60 -13.40 16 4 N -0.34 -14.87 9.89 -58.01 -0.57 -15.45 16 5 C 0.36 13.91 6.27 260.11 1.63 15.54 16 6 N -0.46 -19.01 4.73 -711.01 -3.37 -22.38 16 7 C 0.05 1.78 8.57 127.69 1.09 2.87 16 8 C 0.24 11.98 2.28 44.17 0.10 12.08 16 9 H -0.01 -0.45 8.05 -2.39 -0.02 -0.47 16 10 C -0.16 -8.13 8.16 71.98 0.59 -7.55 16 11 C -0.51 -26.68 7.87 25.60 0.20 -26.48 16 12 H 0.07 3.60 7.15 -2.91 -0.02 3.58 16 13 C 0.01 0.69 5.30 84.66 0.45 1.14 16 14 N -0.92 -52.74 11.32 21.45 0.24 -52.50 16 15 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 N -0.47 -14.14 2.81 -514.85 -1.45 -15.59 16 20 C 0.11 2.55 6.07 86.38 0.52 3.07 16 21 C 0.14 2.34 6.83 86.38 0.59 2.93 16 22 N -0.37 -6.64 3.68 -347.94 -1.28 -7.92 16 23 C 0.08 1.36 11.43 83.53 0.95 2.32 16 24 C -0.20 -3.49 6.65 22.02 0.15 -3.34 16 25 Cl -0.04 -0.67 29.30 -2.72 -0.08 -0.75 16 26 C 0.07 1.15 12.02 85.25 1.02 2.17 16 27 N -0.31 -6.03 12.36 -56.98 -0.70 -6.74 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.16 7.97 -2.39 -0.02 1.14 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.06 6.48 -2.39 -0.02 1.04 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 3.14 6.70 -2.38 -0.02 3.12 16 34 H 0.04 1.84 6.48 -2.39 -0.02 1.82 16 35 H 0.03 1.61 6.00 -2.39 -0.01 1.59 16 36 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 37 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.12 2.40 7.95 -2.39 -0.02 2.38 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.12 1.88 8.07 -2.39 -0.02 1.86 16 41 H 0.11 1.53 8.13 -2.39 -0.02 1.51 16 42 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 43 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -70.41 372.85 4.39 -66.02 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.03 Total: 13.79 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 9.14 Total: 10.92 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -7.73 Total: -133.97 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -70.41 4.39 -66.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381605925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.755 kcal (2) G-P(sol) polarization free energy of solvation -70.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds