Wall clock time and date at job start Tue Mar 31 2020 20:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86796 * 119.99678 * 2 1 4 4 H 1.48499 * 109.47458 * 270.00268 * 3 2 1 5 5 H 1.48505 * 109.47493 * 30.00383 * 3 2 1 6 6 H 1.48506 * 109.47124 * 149.99912 * 3 2 1 7 7 C 1.38649 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00562 * 359.97438 * 7 2 1 9 9 O 1.34830 * 119.99574 * 180.02562 * 7 2 1 10 10 C 1.35754 * 116.99863 * 185.05990 * 9 7 2 11 11 C 1.38879 * 120.06829 * 174.15797 * 10 9 7 12 12 C 1.38104 * 119.92819 * 179.76587 * 11 10 9 13 13 C 1.38294 * 120.07092 * 0.48257 * 12 11 10 14 14 C 1.50700 * 119.93228 * 179.74462 * 13 12 11 15 15 N 1.46494 * 109.47408 * 270.02459 * 14 13 12 16 16 C 1.34778 * 120.00166 * 180.02562 * 15 14 13 17 17 O 1.21272 * 120.00167 * 5.02487 * 16 15 14 18 18 C 1.50706 * 119.99839 * 185.02753 * 16 15 14 19 19 C 1.50697 * 115.55216 * 294.84351 * 18 16 15 20 20 C 1.38669 * 120.41808 * 330.45140 * 19 18 16 21 21 C 1.38630 * 118.42146 * 180.02562 * 20 19 18 22 22 C 1.38232 * 119.15760 * 359.97438 * 21 20 19 23 23 N 1.31858 * 120.76663 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.72054 * 359.70209 * 23 22 21 25 25 C 1.53006 * 117.49484 * 149.17359 * 18 16 15 26 26 C 1.53002 * 117.49434 * 80.51749 * 18 16 15 27 27 C 1.38304 * 120.13582 * 359.77097 * 13 12 11 28 28 C 1.38094 * 120.07283 * 359.97438 * 27 13 12 29 29 H 0.97000 * 119.99701 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03476 * 359.97438 * 11 10 9 31 31 H 1.08008 * 119.96424 * 180.23280 * 12 11 10 32 32 H 1.09003 * 109.47215 * 30.02848 * 14 13 12 33 33 H 1.09007 * 109.47189 * 150.02842 * 14 13 12 34 34 H 0.97010 * 119.99938 * 0.02562 * 15 14 13 35 35 H 1.07996 * 120.78919 * 0.02562 * 20 19 18 36 36 H 1.07996 * 120.42367 * 180.02562 * 21 20 19 37 37 H 1.07995 * 119.61535 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.61660 * 180.31407 * 24 23 22 39 39 H 1.08997 * 117.50047 * 0.02562 * 25 18 16 40 40 H 1.08994 * 117.49352 * 145.02388 * 25 18 16 41 41 H 1.09009 * 117.49462 * 214.97515 * 26 18 16 42 42 H 1.08996 * 117.50220 * 359.97438 * 26 18 16 43 43 H 1.08005 * 119.96517 * 179.97438 * 27 13 12 44 44 H 1.08004 * 120.03995 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9735 -2.4055 -0.1073 11 6 5.3548 -2.4715 -0.2354 12 6 5.9793 -3.6988 -0.3395 13 6 5.2298 -4.8610 -0.3262 14 6 5.9140 -6.1984 -0.4457 15 7 6.0164 -6.5700 -1.8590 16 6 6.5963 -7.7352 -2.2091 17 8 6.9510 -8.5174 -1.3530 18 6 6.8039 -8.0661 -3.6647 19 6 5.5468 -8.2519 -4.4748 20 6 4.3882 -8.7218 -3.8750 21 6 3.2557 -8.8777 -4.6594 22 6 3.3187 -8.5613 -6.0035 23 7 4.4381 -8.1168 -6.5401 24 6 5.5327 -7.9513 -5.8234 25 6 8.0123 -8.9319 -4.0269 26 6 8.0104 -7.4393 -4.3664 27 6 3.8536 -4.7984 -0.2039 28 6 3.2236 -3.5744 -0.0942 29 1 -0.4850 0.8401 0.0004 30 1 5.9403 -1.5640 -0.2504 31 1 7.0538 -3.7510 -0.4354 32 1 6.9126 -6.1356 -0.0132 33 1 5.3340 -6.9521 0.0870 34 1 5.6669 -5.9774 -2.5429 35 1 4.3684 -8.9605 -2.8220 36 1 2.3358 -9.2409 -4.2256 37 1 2.4410 -8.6803 -6.6215 38 1 6.4297 -7.5803 -6.2969 39 1 8.6568 -9.2626 -3.2125 40 1 7.8980 -9.6356 -4.8514 41 1 7.8950 -7.1617 -5.4142 42 1 8.6537 -6.7874 -3.7755 43 1 3.2709 -5.7077 -0.1943 44 1 2.1489 -3.5261 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411739210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:20 Heat of formation + Delta-G solvation = 26.149731 kcal Electronic energy + Delta-G solvation = -27579.767463 eV Core-core repulsion = 23656.726445 eV Total energy + Delta-G solvation = -3923.041018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.07977 -39.73893 -39.25208 -37.34219 -36.71988 -34.55667 -32.74143 -32.50508 -31.14872 -30.46441 -30.20131 -26.63169 -25.38118 -24.34813 -23.96658 -22.70772 -22.42697 -22.21422 -20.67401 -19.88073 -18.05105 -17.99673 -17.48023 -17.18272 -16.38740 -16.06019 -15.77975 -15.19228 -15.00054 -14.77150 -14.47916 -14.22227 -14.09029 -14.06354 -13.91583 -13.49291 -13.32096 -13.03979 -12.90767 -12.75276 -12.36469 -12.31203 -12.05978 -11.83473 -11.61253 -11.38759 -11.05858 -10.98747 -10.88155 -10.81552 -10.25867 -10.19490 -10.00739 -9.62650 -9.52472 -9.18587 -9.07713 -8.98038 -8.42862 -7.52652 -6.53127 -4.20247 0.74266 0.97502 1.88986 1.98040 2.36942 3.05677 3.15103 3.18671 3.28300 3.32475 3.66221 3.96336 4.13937 4.23779 4.31040 4.40311 4.46661 4.56323 4.64186 4.67871 4.70610 4.92488 4.98823 5.04437 5.14214 5.20634 5.27564 5.36740 5.48226 5.50015 5.50625 5.65983 5.71638 5.76141 5.83703 5.92622 5.98390 6.19456 6.34458 6.36977 6.41457 6.62812 6.84949 7.07143 7.13911 7.43590 7.46423 7.66023 7.66934 7.90755 8.08205 8.81305 9.41490 10.53991 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002552 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.365178 B =10971.056712 C =12037.096037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.167 3.833 11 C -0.195 4.195 12 C -0.056 4.056 13 C -0.208 4.208 14 C 0.177 3.823 15 N -0.713 5.713 16 C 0.550 3.450 17 O -0.539 6.539 18 C -0.122 4.122 19 C -0.094 4.094 20 C -0.064 4.064 21 C -0.164 4.164 22 C 0.096 3.904 23 N -0.480 5.480 24 C 0.102 3.898 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.052 4.052 28 C -0.224 4.224 29 H 0.281 0.719 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.404 0.596 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.134 -16.036 -9.551 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.116 6.116 10 C 0.114 3.886 11 C -0.214 4.214 12 C -0.074 4.074 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.364 5.364 16 C 0.335 3.665 17 O -0.416 6.416 18 C -0.125 4.125 19 C -0.097 4.097 20 C -0.090 4.090 21 C -0.184 4.184 22 C -0.061 4.061 23 N -0.188 5.188 24 C -0.055 4.055 25 C -0.169 4.169 26 C -0.191 4.191 27 C -0.070 4.070 28 C -0.243 4.243 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.239 0.761 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.263 -15.999 -9.771 22.401 hybrid contribution -0.319 0.814 0.698 1.119 sum 11.944 -15.185 -9.073 21.344 Atomic orbital electron populations 1.69645 1.05618 1.28721 1.47186 1.24491 0.95047 0.98949 0.95425 0.86173 0.80345 0.81296 0.79065 1.19770 1.20649 1.18301 1.20785 0.76740 0.96734 1.52489 0.87507 1.83576 1.22783 1.25828 1.79408 1.19182 0.91745 0.85507 0.92165 1.20214 0.91980 0.97906 1.11313 1.20524 0.98400 0.91202 0.97315 1.19247 0.93819 0.93428 1.14402 1.20037 1.00032 0.93575 0.80829 1.46290 1.59661 1.20868 1.09560 1.19276 0.77456 0.81434 0.88367 1.90704 1.51027 1.48582 1.51291 1.20061 0.89748 1.09778 0.92963 1.19764 0.93651 1.01364 0.94895 1.21462 0.91950 0.94975 1.00593 1.22178 0.99402 1.01389 0.95391 1.22832 0.95979 0.94239 0.93060 1.67745 0.99428 1.12203 1.39376 1.22644 0.96756 0.95998 0.90090 1.23104 0.96766 0.93654 1.03408 1.23226 0.97450 0.96812 1.01568 1.20686 0.93302 0.96840 0.96209 1.21277 1.01258 0.91757 1.09997 0.90866 0.86332 0.86779 0.91371 0.91323 0.76150 0.84953 0.84401 0.82521 0.82629 0.87164 0.87698 0.87255 0.87491 0.87183 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.56 13.96 55.48 0.77 -23.79 16 2 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 20.97 28.62 -169.99 -4.86 16.10 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.39 -10.64 9.95 30.88 0.31 -10.34 16 8 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 9 O -0.21 -5.34 8.59 0.04 0.00 -5.34 16 10 C 0.17 3.63 6.65 -39.11 -0.26 3.37 16 11 C -0.19 -3.56 9.99 -39.39 -0.39 -3.95 16 12 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.21 -3.08 5.25 -104.58 -0.55 -3.63 16 14 C 0.18 2.27 5.80 -5.20 -0.03 2.24 16 15 N -0.71 -8.30 5.55 -61.47 -0.34 -8.64 16 16 C 0.55 6.65 5.98 -10.98 -0.07 6.59 16 17 O -0.54 -8.30 16.70 5.56 0.09 -8.20 16 18 C -0.12 -1.15 2.37 -156.81 -0.37 -1.52 16 19 C -0.09 -0.91 5.50 -104.48 -0.57 -1.49 16 20 C -0.06 -0.64 9.44 -39.28 -0.37 -1.01 16 21 C -0.16 -1.45 10.11 -39.44 -0.40 -1.85 16 22 C 0.10 0.89 11.18 -17.54 -0.20 0.69 16 23 N -0.48 -5.17 10.36 -13.25 -0.14 -5.30 16 24 C 0.10 0.97 10.53 -17.55 -0.18 0.78 16 25 C -0.13 -1.04 9.73 -26.69 -0.26 -1.30 16 26 C -0.15 -1.08 9.58 -26.69 -0.26 -1.34 16 27 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 28 C -0.22 -4.50 9.17 -39.40 -0.36 -4.86 16 29 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 31 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 32 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.40 4.48 8.47 -40.82 -0.35 4.14 16 35 H 0.13 1.36 7.43 -52.49 -0.39 0.97 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.16 1.12 5.97 -52.49 -0.31 0.81 16 39 H 0.11 0.95 7.99 -51.93 -0.41 0.54 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.58 6.13 -51.92 -0.32 0.26 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 44 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -30.94 379.31 -8.89 -39.82 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.30 Total: 8.06 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -4.83 Total: -18.42 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.30 Total: -37.73 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.86 Total: 16.10 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.94 -8.89 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411739210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.972 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds