Wall clock time and date at job start Tue Mar 31 2020 20:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48505 * 109.47004 * 90.00177 * 3 2 1 5 5 H 1.48501 * 109.47438 * 209.99652 * 3 2 1 6 6 H 1.48496 * 109.47137 * 330.00091 * 3 2 1 7 7 C 1.38657 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99799 * 359.97438 * 7 2 1 9 9 O 1.34826 * 120.00266 * 180.02562 * 7 2 1 10 10 C 1.35756 * 116.99936 * 174.92304 * 9 7 2 11 11 C 1.38892 * 120.06834 * 5.23361 * 10 9 7 12 12 C 1.38078 * 119.92698 * 179.67610 * 11 10 9 13 13 C 1.38324 * 120.06945 * 0.62332 * 12 11 10 14 14 C 1.38270 * 120.14045 * 359.67656 * 13 12 11 15 15 C 1.50702 * 119.96825 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.46990 * 269.97377 * 15 14 13 17 17 C 1.34778 * 119.99442 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00470 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99508 * 180.02562 * 17 16 15 20 20 H 1.08997 * 115.55424 * 34.41201 * 19 17 16 21 21 C 1.52999 * 117.49315 * 248.74522 * 19 17 16 22 22 C 1.52999 * 117.49524 * 180.08853 * 19 17 16 23 23 H 1.08999 * 117.50358 * 359.97438 * 22 19 17 24 24 C 1.50707 * 117.49391 * 214.97562 * 22 19 17 25 25 C 1.38654 * 120.78889 * 299.71360 * 24 22 19 26 26 C 1.38202 * 119.15781 * 179.75809 * 25 24 22 27 27 N 1.31866 * 120.76655 * 0.53253 * 26 25 24 28 28 C 1.31867 * 121.72673 * 359.74378 * 27 26 25 29 29 C 1.38208 * 120.76421 * 359.97407 * 28 27 26 30 30 C 1.38127 * 120.06498 * 359.97438 * 14 13 12 31 31 H 0.97002 * 120.00018 * 359.97438 * 1 2 3 32 32 H 1.07995 * 120.03625 * 0.02562 * 11 10 9 33 33 H 1.08003 * 119.96839 * 180.32093 * 12 11 10 34 34 H 1.08004 * 119.92896 * 179.69370 * 13 12 11 35 35 H 1.08998 * 109.46715 * 29.98115 * 15 14 13 36 36 H 1.09004 * 109.46770 * 149.97421 * 15 14 13 37 37 H 0.96991 * 120.00161 * 0.02562 * 16 15 14 38 38 H 1.09001 * 117.50258 * 359.97438 * 21 19 17 39 39 H 1.09002 * 117.49618 * 145.02437 * 21 19 17 40 40 H 1.07992 * 120.41773 * 0.02562 * 25 24 22 41 41 H 1.08002 * 119.61746 * 180.30424 * 26 25 24 42 42 H 1.08000 * 119.62026 * 179.97438 * 28 27 26 43 43 H 1.07996 * 120.41669 * 180.02562 * 29 28 27 44 44 H 1.08004 * 120.03132 * 180.02562 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4001 5 1 3.5472 1.4402 -0.7000 6 1 1.4471 2.6527 -0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9733 -2.4057 0.1086 11 6 3.2227 -3.5743 0.1023 12 6 3.8530 -4.7985 0.2052 13 6 5.2294 -4.8612 0.3273 14 6 5.9790 -3.6994 0.3401 15 6 7.4784 -3.7723 0.4728 16 7 7.8456 -3.7339 1.8905 17 6 9.1429 -3.7865 2.2522 18 8 10.0062 -3.8660 1.4041 19 6 9.5206 -3.7476 3.7106 20 1 8.8255 -4.2414 4.3896 21 6 10.2385 -2.4966 4.2212 22 6 11.0097 -3.8085 4.0565 23 1 11.7162 -3.8772 3.2293 24 6 11.4031 -4.5464 5.3102 25 6 10.9304 -4.1424 6.5495 26 6 11.3088 -4.8466 7.6768 27 7 12.1171 -5.8843 7.5842 28 6 12.5903 -6.2933 6.4233 29 6 12.2511 -5.6419 5.2525 30 6 5.3549 -2.4720 0.2304 31 1 -0.4850 0.8401 0.0004 32 1 2.1477 -3.5257 0.0114 33 1 3.2704 -5.7078 0.1951 34 1 5.7197 -5.8198 0.4126 35 1 7.8376 -4.7009 0.0293 36 1 7.9303 -2.9249 -0.0427 37 1 7.1552 -3.6707 2.5688 38 1 10.4379 -1.7020 3.5022 39 1 10.0160 -2.1678 5.2363 40 1 10.2715 -3.2908 6.6322 41 1 10.9410 -4.5413 8.6453 42 1 13.2506 -7.1472 6.3869 43 1 12.6415 -5.9819 4.3048 44 1 5.9410 -1.5649 0.2401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411967114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:03 Heat of formation + Delta-G solvation = 22.097877 kcal Electronic energy + Delta-G solvation = -26599.363306 eV Core-core repulsion = 22676.146587 eV Total energy + Delta-G solvation = -3923.216719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.88837 -39.95960 -39.28688 -37.41226 -36.77152 -34.64319 -32.49348 -32.39654 -31.56440 -30.96248 -29.48808 -26.70294 -25.34545 -24.96244 -24.06528 -23.40791 -21.89482 -21.29295 -20.78444 -20.24001 -18.13761 -17.81707 -17.44698 -16.81381 -16.47734 -15.99456 -15.84569 -15.55630 -15.27837 -14.91403 -14.45243 -14.35332 -14.22540 -14.04268 -13.96965 -13.86891 -13.48182 -12.85440 -12.75203 -12.63415 -12.41234 -12.26362 -12.13389 -12.00459 -11.57195 -11.45169 -11.00394 -10.97084 -10.89137 -10.85814 -10.25423 -10.12084 -9.85945 -9.65666 -9.54058 -9.51198 -9.15094 -8.97560 -8.39652 -7.54060 -6.50757 -4.18275 0.74661 0.77760 1.74000 2.09137 2.30974 3.06729 3.15670 3.19261 3.31360 3.33567 3.63672 4.01731 4.09208 4.15425 4.24705 4.34794 4.36891 4.50966 4.59648 4.67606 4.73800 4.79882 4.82285 4.99251 5.05333 5.17743 5.27949 5.34621 5.41891 5.50401 5.51528 5.56758 5.68610 5.68804 5.76442 5.95396 5.98017 6.09004 6.30194 6.31696 6.35813 6.61436 6.93467 7.04816 7.14771 7.38543 7.46318 7.59504 7.68112 7.92630 8.07788 8.83920 9.44437 10.56532 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.001937 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.924327 B =14453.597429 C =15068.443429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.281 1.281 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.211 4.211 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.076 4.076 15 C 0.168 3.832 16 N -0.715 5.715 17 C 0.541 3.459 18 O -0.544 6.544 19 C -0.172 4.172 20 H 0.127 0.873 21 C -0.139 4.139 22 C -0.092 4.092 23 H 0.132 0.868 24 C -0.007 4.007 25 C -0.174 4.174 26 C 0.101 3.899 27 N -0.490 5.490 28 C 0.100 3.900 29 C -0.163 4.163 30 C -0.171 4.171 31 H 0.280 0.720 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.405 0.595 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.477 -8.755 11.048 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.207 1.207 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.231 4.231 12 C -0.095 4.095 13 C -0.206 4.206 14 C -0.077 4.077 15 C 0.045 3.955 16 N -0.365 5.365 17 C 0.327 3.673 18 O -0.422 6.422 19 C -0.193 4.193 20 H 0.145 0.855 21 C -0.177 4.177 22 C -0.110 4.110 23 H 0.150 0.850 24 C -0.015 4.015 25 C -0.193 4.193 26 C -0.056 4.056 27 N -0.200 5.200 28 C -0.056 4.056 29 C -0.183 4.183 30 C -0.191 4.191 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.240 0.760 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 21.195 -8.885 11.144 25.541 hybrid contribution -0.734 1.075 -0.522 1.402 sum 20.461 -7.810 10.623 24.341 Atomic orbital electron populations 1.69639 1.05578 1.28629 1.47525 1.24475 0.95037 0.98884 0.95549 0.86182 0.80350 0.81388 0.78993 1.19846 1.18349 1.20694 1.20759 0.76767 0.96668 1.52527 0.87579 1.83576 1.22711 1.25563 1.80127 1.19061 0.91551 0.85659 0.93353 1.21371 1.01321 0.91911 1.08464 1.20812 0.94152 0.96864 0.97716 1.20551 0.93880 0.96749 1.09420 1.19245 0.93293 0.93032 1.02095 1.20176 0.91419 1.02603 0.81281 1.46051 1.07225 1.74153 1.09081 1.19532 0.82580 0.76015 0.89160 1.90698 1.49152 1.50019 1.52344 1.22349 0.96081 1.05522 0.95356 0.85520 1.23174 1.00638 0.90687 1.03178 1.21101 0.93686 0.99265 0.96969 0.85002 1.19545 0.94488 0.94045 0.93424 1.22096 1.02312 1.01992 0.92943 1.22771 0.93305 0.90851 0.98638 1.67682 1.09958 1.13873 1.28438 1.22787 0.96921 0.98449 0.87486 1.22040 0.99406 0.96375 1.00506 1.20074 0.91989 0.97187 1.09882 0.90935 0.84792 0.86936 0.87295 0.90771 0.90777 0.76002 0.87261 0.87159 0.84532 0.82641 0.82619 0.84514 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 13.96 55.48 0.77 -23.80 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.98 28.62 -169.99 -4.86 16.12 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.39 -10.61 9.95 30.89 0.31 -10.30 16 8 H 0.11 2.93 5.43 -52.49 -0.29 2.64 16 9 O -0.21 -5.41 8.59 0.04 0.00 -5.41 16 10 C 0.16 3.37 6.65 -39.11 -0.26 3.11 16 11 C -0.21 -4.24 9.17 -39.40 -0.36 -4.60 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.67 16 13 C -0.19 -2.81 9.70 -39.54 -0.38 -3.19 16 14 C -0.08 -1.16 5.25 -104.65 -0.55 -1.71 16 15 C 0.17 2.20 5.80 -5.19 -0.03 2.17 16 16 N -0.71 -8.19 5.55 -61.47 -0.34 -8.54 16 17 C 0.54 6.40 7.61 -10.98 -0.08 6.31 16 18 O -0.54 -8.28 16.26 5.56 0.09 -8.19 16 19 C -0.17 -1.47 5.84 -91.77 -0.54 -2.00 16 20 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.14 -1.00 9.59 -26.69 -0.26 -1.25 16 22 C -0.09 -0.75 5.60 -91.73 -0.51 -1.26 16 23 H 0.13 1.22 7.67 -51.93 -0.40 0.82 16 24 C -0.01 -0.06 5.64 -104.31 -0.59 -0.64 16 25 C -0.17 -1.23 9.39 -39.44 -0.37 -1.60 16 26 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 27 N -0.49 -4.60 10.36 -13.25 -0.14 -4.74 16 28 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 29 C -0.16 -1.25 9.84 -39.44 -0.39 -1.64 16 30 C -0.17 -3.11 9.65 -39.39 -0.38 -3.49 16 31 H 0.28 7.26 8.31 -40.82 -0.34 6.93 16 32 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.41 4.08 8.46 -40.82 -0.35 3.74 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.11 0.57 6.25 -51.93 -0.32 0.25 16 40 H 0.14 0.68 6.16 -52.49 -0.32 0.36 16 41 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -31.50 380.93 -9.34 -40.84 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.33 Total: 6.91 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -5.28 Total: -18.95 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.30 Total: -37.07 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.50 -9.34 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411967114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.940 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds