Wall clock time and date at job start Tue Mar 31 2020 20:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48505 * 109.47004 * 90.00177 * 3 2 1 5 5 H 1.48501 * 109.47438 * 209.99652 * 3 2 1 6 6 H 1.48496 * 109.47137 * 330.00091 * 3 2 1 7 7 C 1.38657 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99799 * 359.97438 * 7 2 1 9 9 O 1.34826 * 120.00266 * 180.02562 * 7 2 1 10 10 C 1.35756 * 116.99936 * 174.92304 * 9 7 2 11 11 C 1.38892 * 120.06834 * 5.23361 * 10 9 7 12 12 C 1.38078 * 119.92698 * 179.67610 * 11 10 9 13 13 C 1.38324 * 120.06945 * 0.62332 * 12 11 10 14 14 C 1.38270 * 120.14045 * 359.67656 * 13 12 11 15 15 C 1.50702 * 119.96825 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.46990 * 269.97377 * 15 14 13 17 17 C 1.34778 * 119.99442 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00470 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99508 * 180.02562 * 17 16 15 20 20 H 1.08997 * 115.55424 * 34.41201 * 19 17 16 21 21 C 1.52999 * 117.49315 * 248.74522 * 19 17 16 22 22 C 1.52999 * 117.49524 * 180.08853 * 19 17 16 23 23 H 1.08999 * 117.50358 * 359.97438 * 22 19 17 24 24 C 1.50707 * 117.49391 * 214.97562 * 22 19 17 25 25 C 1.38654 * 120.78889 * 299.71360 * 24 22 19 26 26 C 1.38202 * 119.15781 * 179.75809 * 25 24 22 27 27 N 1.31866 * 120.76655 * 0.53253 * 26 25 24 28 28 C 1.31867 * 121.72673 * 359.74378 * 27 26 25 29 29 C 1.38208 * 120.76421 * 359.97407 * 28 27 26 30 30 C 1.38127 * 120.06498 * 359.97438 * 14 13 12 31 31 H 0.97002 * 120.00018 * 359.97438 * 1 2 3 32 32 H 1.07995 * 120.03625 * 0.02562 * 11 10 9 33 33 H 1.08003 * 119.96839 * 180.32093 * 12 11 10 34 34 H 1.08004 * 119.92896 * 179.69370 * 13 12 11 35 35 H 1.08998 * 109.46715 * 29.98115 * 15 14 13 36 36 H 1.09004 * 109.46770 * 149.97421 * 15 14 13 37 37 H 0.96991 * 120.00161 * 0.02562 * 16 15 14 38 38 H 1.09001 * 117.50258 * 359.97438 * 21 19 17 39 39 H 1.09002 * 117.49618 * 145.02437 * 21 19 17 40 40 H 1.07992 * 120.41773 * 0.02562 * 25 24 22 41 41 H 1.08002 * 119.61746 * 180.30424 * 26 25 24 42 42 H 1.08000 * 119.62026 * 179.97438 * 28 27 26 43 43 H 1.07996 * 120.41669 * 180.02562 * 29 28 27 44 44 H 1.08004 * 120.03132 * 180.02562 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4001 5 1 3.5472 1.4402 -0.7000 6 1 1.4471 2.6527 -0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9733 -2.4057 0.1086 11 6 3.2227 -3.5743 0.1023 12 6 3.8530 -4.7985 0.2052 13 6 5.2294 -4.8612 0.3273 14 6 5.9790 -3.6994 0.3401 15 6 7.4784 -3.7723 0.4728 16 7 7.8456 -3.7339 1.8905 17 6 9.1429 -3.7865 2.2522 18 8 10.0062 -3.8660 1.4041 19 6 9.5206 -3.7476 3.7106 20 1 8.8255 -4.2414 4.3896 21 6 10.2385 -2.4966 4.2212 22 6 11.0097 -3.8085 4.0565 23 1 11.7162 -3.8772 3.2293 24 6 11.4031 -4.5464 5.3102 25 6 10.9304 -4.1424 6.5495 26 6 11.3088 -4.8466 7.6768 27 7 12.1171 -5.8843 7.5842 28 6 12.5903 -6.2933 6.4233 29 6 12.2511 -5.6419 5.2525 30 6 5.3549 -2.4720 0.2304 31 1 -0.4850 0.8401 0.0004 32 1 2.1477 -3.5257 0.0114 33 1 3.2704 -5.7078 0.1951 34 1 5.7197 -5.8198 0.4126 35 1 7.8376 -4.7009 0.0293 36 1 7.9303 -2.9249 -0.0427 37 1 7.1552 -3.6707 2.5688 38 1 10.4379 -1.7020 3.5022 39 1 10.0160 -2.1678 5.2363 40 1 10.2715 -3.2908 6.6322 41 1 10.9410 -4.5413 8.6453 42 1 13.2506 -7.1472 6.3869 43 1 12.6415 -5.9819 4.3048 44 1 5.9410 -1.5649 0.2401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411967114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:02 Heat of formation + Delta-G solvation = 3.415883 kcal Electronic energy + Delta-G solvation = -26600.173418 eV Core-core repulsion = 22676.146587 eV Total energy + Delta-G solvation = -3924.026831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.56083 -41.03877 -40.57881 -38.71000 -37.73876 -35.77780 -34.45956 -33.01947 -32.26539 -32.06259 -31.00753 -27.87866 -27.13250 -25.64086 -24.82759 -24.06531 -23.32196 -22.28912 -21.88301 -21.13255 -19.71030 -19.11950 -18.57077 -17.65913 -17.19261 -16.94501 -16.83780 -16.73225 -16.39690 -16.16010 -15.75033 -15.66908 -15.40065 -15.00508 -14.85837 -14.73937 -14.50047 -14.41991 -14.20163 -13.86790 -13.54934 -13.43291 -13.13436 -12.95109 -12.60721 -12.55480 -12.48766 -12.39788 -12.08646 -11.94942 -11.61264 -11.34056 -11.07285 -10.91373 -10.42872 -10.27859 -10.14233 -10.07054 -9.79887 -9.13959 -8.50606 -6.23537 0.19539 0.22218 0.34132 0.63074 1.31782 1.34751 1.44748 1.51374 2.14764 2.27040 2.67326 2.77294 3.01023 3.04165 3.10739 3.40956 3.60613 3.62919 3.73083 3.77125 3.90753 4.04591 4.07931 4.18533 4.23093 4.26034 4.28782 4.39211 4.47861 4.61895 4.65284 4.71058 4.77568 4.90793 4.91152 4.94053 4.98076 5.13015 5.17243 5.32950 5.36994 5.43019 5.61083 5.67250 5.73867 5.79032 5.87918 6.17731 6.50298 6.83730 7.05116 7.16969 7.57122 8.60651 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.001937 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.924327 B =14453.597429 C =15068.443429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.398 4.398 8 H 0.083 0.917 9 O -0.244 6.244 10 C 0.119 3.881 11 C -0.228 4.228 12 C -0.074 4.074 13 C -0.160 4.160 14 C -0.061 4.061 15 C 0.173 3.827 16 N -0.709 5.709 17 C 0.541 3.459 18 O -0.581 6.581 19 C -0.173 4.173 20 H 0.147 0.853 21 C -0.127 4.127 22 C -0.092 4.092 23 H 0.117 0.883 24 C -0.016 4.016 25 C -0.171 4.171 26 C 0.090 3.910 27 N -0.518 5.518 28 C 0.090 3.910 29 C -0.172 4.172 30 C -0.169 4.169 31 H 0.284 0.716 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.414 0.586 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.177 0.823 42 H 0.174 0.826 43 H 0.146 0.854 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.729 -9.684 12.299 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.194 1.194 7 C -0.475 4.475 8 H 0.101 0.899 9 O -0.152 6.152 10 C 0.070 3.930 11 C -0.247 4.247 12 C -0.092 4.092 13 C -0.178 4.178 14 C -0.061 4.061 15 C 0.050 3.950 16 N -0.360 5.360 17 C 0.329 3.671 18 O -0.462 6.462 19 C -0.195 4.195 20 H 0.164 0.836 21 C -0.164 4.164 22 C -0.111 4.111 23 H 0.135 0.865 24 C -0.024 4.024 25 C -0.190 4.190 26 C -0.066 4.066 27 N -0.228 5.228 28 C -0.066 4.066 29 C -0.191 4.191 30 C -0.189 4.189 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.121 0.879 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.194 0.806 42 H 0.191 0.809 43 H 0.164 0.836 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.464 -9.852 12.414 28.314 hybrid contribution -1.207 1.042 -0.897 1.829 sum 22.257 -8.810 11.517 26.564 Atomic orbital electron populations 1.69724 1.06865 1.29584 1.50026 1.25260 0.95858 1.02105 0.95594 0.85241 0.78758 0.77566 0.79312 1.18930 1.18834 1.19434 1.20693 0.78020 0.96119 1.52621 0.89929 1.83521 1.21274 1.27374 1.83016 1.19584 0.92969 0.85235 0.95222 1.21399 1.00412 0.93283 1.09614 1.21142 0.95228 0.96412 0.96424 1.21031 0.93144 0.98252 1.05419 1.19451 0.94575 0.91985 1.00116 1.20060 0.89351 1.03091 0.82465 1.45952 1.07607 1.73936 1.08523 1.20027 0.81989 0.74841 0.90270 1.90688 1.50071 1.51698 1.53719 1.22333 0.96689 1.07036 0.93395 0.83576 1.23304 0.98958 0.89877 1.04252 1.20990 0.93110 1.00235 0.96720 0.86520 1.19624 0.94894 0.94226 0.93631 1.22311 1.02133 1.02328 0.92233 1.23186 0.93000 0.90528 0.99898 1.67697 1.10950 1.14933 1.29233 1.23111 0.97180 0.99065 0.87270 1.22219 0.99506 0.96486 1.00912 1.20275 0.90557 0.98847 1.09188 0.90586 0.87221 0.83892 0.83411 0.89666 0.91219 0.74963 0.87861 0.84622 0.82276 0.80645 0.80924 0.83641 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.80 13.96 21.61 0.30 -53.50 16 2 C 0.01 0.59 5.49 84.83 0.47 1.06 16 3 Si 0.97 44.26 28.62 68.60 1.96 46.22 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.40 -22.68 9.95 67.92 0.68 -22.00 16 8 H 0.08 4.91 5.43 -2.91 -0.02 4.90 16 9 O -0.24 -12.72 8.59 -22.77 -0.20 -12.92 16 10 C 0.12 5.20 6.65 22.57 0.15 5.35 16 11 C -0.23 -9.24 9.17 22.39 0.21 -9.04 16 12 C -0.07 -2.26 10.04 22.25 0.22 -2.04 16 13 C -0.16 -4.13 9.70 22.30 0.22 -3.92 16 14 C -0.06 -1.66 5.25 -19.88 -0.10 -1.77 16 15 C 0.17 3.98 5.80 85.63 0.50 4.48 16 16 N -0.71 -14.05 5.55 -466.78 -2.59 -16.64 16 17 C 0.54 11.46 7.61 87.66 0.67 12.13 16 18 O -0.58 -16.73 16.26 -3.02 -0.05 -16.78 16 19 C -0.17 -2.47 5.84 -11.54 -0.07 -2.54 16 20 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.13 -1.45 9.59 30.62 0.29 -1.15 16 22 C -0.09 -1.31 5.60 -11.51 -0.06 -1.38 16 23 H 0.12 2.05 7.67 -2.39 -0.02 2.03 16 24 C -0.02 -0.22 5.64 -19.67 -0.11 -0.33 16 25 C -0.17 -1.94 9.39 22.36 0.21 -1.73 16 26 C 0.09 1.20 11.18 84.68 0.95 2.14 16 27 N -0.52 -9.01 10.36 -195.85 -2.03 -11.04 16 28 C 0.09 1.30 11.18 84.68 0.95 2.25 16 29 C -0.17 -2.38 9.84 22.36 0.22 -2.16 16 30 C -0.17 -5.93 9.65 22.39 0.22 -5.71 16 31 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.11 4.97 5.64 -2.91 -0.02 4.95 16 33 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.41 6.89 8.46 -92.71 -0.78 6.10 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.14 0.85 6.25 -2.39 -0.01 0.84 16 40 H 0.16 0.97 6.16 -2.91 -0.02 0.95 16 41 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -71.68 380.93 3.25 -68.43 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.26 Total: 22.58 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 5.59 Total: -26.35 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -4.32 Total: -81.18 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.24 Total: -29.70 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.96 Total: 46.22 kcal Total: -71.68 3.25 -68.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411967114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.842 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds