Wall clock time and date at job start Tue Mar 31 2020 20:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47124 * 90.00326 * 3 2 1 5 5 H 1.48509 * 109.46919 * 209.99974 * 3 2 1 6 6 H 1.48503 * 109.47384 * 329.99772 * 3 2 1 7 7 C 1.40054 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99966 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99975 * 354.97653 * 9 7 2 11 11 N 1.34777 * 120.00043 * 174.98237 * 9 7 2 12 12 C 1.46966 * 120.59305 * 4.93605 * 11 9 7 13 13 C 1.53814 * 108.39849 * 124.75935 * 12 11 9 14 14 N 1.46966 * 108.57810 * 49.63797 * 13 12 11 15 15 C 1.34774 * 120.59674 * 124.62713 * 14 13 12 16 16 O 1.21280 * 120.00320 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99675 * 0.02562 * 15 14 13 18 18 N 1.46494 * 109.47214 * 180.02562 * 17 15 14 19 19 C 1.46413 * 119.53765 * 90.00130 * 18 17 15 20 20 C 1.53032 * 109.52281 * 144.12064 * 19 18 17 21 21 C 1.50812 * 109.18195 * 46.70032 * 20 19 18 22 22 O 1.21239 * 120.01627 * 145.78855 * 21 20 19 23 23 N 1.34562 * 119.96326 * 325.76078 * 21 20 19 24 24 C 1.34289 * 120.93062 * 4.19741 * 23 21 20 25 25 O 1.21537 * 119.17632 * 192.26574 * 24 23 21 26 26 C 1.46968 * 118.81084 * 304.64938 * 14 13 12 27 27 C 1.46966 * 120.59464 * 185.21833 * 11 9 7 28 28 H 0.97000 * 119.99587 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.61294 * 244.54438 * 12 11 9 30 30 H 1.09002 * 109.60786 * 5.05936 * 12 11 9 31 31 H 1.09007 * 109.74220 * 289.85406 * 13 12 11 32 32 H 1.08995 * 109.67785 * 169.38601 * 13 12 11 33 33 H 1.09004 * 109.47093 * 300.00356 * 17 15 14 34 34 H 1.09006 * 109.47230 * 60.00331 * 17 15 14 35 35 H 1.09002 * 109.46517 * 264.14100 * 19 18 17 36 36 H 1.09003 * 109.45793 * 24.10674 * 19 18 17 37 37 H 1.08999 * 109.52116 * 166.61012 * 20 19 18 38 38 H 1.08999 * 109.52290 * 286.78916 * 20 19 18 39 39 H 0.97001 * 119.50163 * 184.45614 * 23 21 20 40 40 H 1.09002 * 109.60813 * 295.47678 * 26 14 13 41 41 H 1.08999 * 109.60718 * 174.97107 * 26 14 13 42 42 H 1.08998 * 109.61138 * 354.95013 * 27 11 9 43 43 H 1.08995 * 109.60532 * 115.28615 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0463 1.4001 5 1 3.5384 1.4400 -0.7001 6 1 1.4383 2.6527 -0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4824 0.0924 11 7 1.9450 -3.6455 -0.1010 12 6 3.4145 -3.6655 -0.1038 13 6 3.8894 -4.6047 1.0180 14 7 3.1635 -5.8773 0.9018 15 6 3.8334 -7.0422 0.7993 16 8 3.2235 -8.0862 0.7035 17 6 5.3404 -7.0477 0.8038 18 7 5.8242 -8.4250 0.6810 19 6 6.0667 -8.9890 -0.6482 20 6 7.2832 -9.9161 -0.5961 21 6 7.1615 -10.8267 0.5999 22 8 7.5802 -11.9630 0.5421 23 7 6.5884 -10.3771 1.7313 24 6 6.0442 -9.1507 1.7893 25 8 5.7391 -8.6885 2.8711 26 6 1.6940 -5.8568 0.8988 27 6 1.2191 -4.9182 -0.2172 28 1 -0.4849 0.8401 -0.0004 29 1 3.7736 -4.0299 -1.0662 30 1 3.7943 -2.6594 0.0741 31 1 3.6829 -4.1531 1.9884 32 1 4.9599 -4.7837 0.9181 33 1 5.7084 -6.4575 -0.0355 34 1 5.7026 -6.6169 1.7373 35 1 5.1919 -9.5554 -0.9676 36 1 6.2551 -8.1820 -1.3562 37 1 7.3246 -10.5141 -1.5064 38 1 8.1918 -9.3202 -0.5091 39 1 6.5717 -10.9458 2.5170 40 1 1.3313 -5.4944 1.8607 41 1 1.3145 -6.8623 0.7173 42 1 0.1488 -4.7395 -0.1144 43 1 1.4232 -5.3682 -1.1887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412662191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:39 Heat of formation + Delta-G solvation = -104.539090 kcal Electronic energy + Delta-G solvation = -29737.240765 eV Core-core repulsion = 25397.683391 eV Total energy + Delta-G solvation = -4339.557373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02338 -40.12990 -39.16059 -38.00172 -36.56378 -35.87949 -34.97569 -33.18382 -32.55205 -32.06191 -31.11912 -28.40920 -27.23106 -25.86525 -25.47395 -23.61301 -23.15716 -22.15881 -20.36914 -19.35872 -18.78385 -18.50955 -18.07606 -17.54736 -16.84551 -16.34018 -16.07975 -15.78848 -15.50542 -15.20658 -15.04040 -14.85281 -14.76204 -14.55777 -14.23844 -14.11705 -13.86839 -13.44080 -13.38872 -12.94209 -12.69089 -12.41400 -12.07833 -11.99961 -11.69169 -11.47858 -11.24471 -11.09577 -11.06459 -11.03056 -10.80511 -10.63695 -10.56587 -10.33216 -10.21419 -10.13431 -9.14021 -8.98869 -8.72654 -7.72265 -7.34001 -6.31081 -4.77487 1.35579 1.88582 2.56507 2.63260 2.84213 3.06125 3.08433 3.13669 3.15929 3.89000 3.98054 4.05296 4.34047 4.38230 4.43368 4.44952 4.53318 4.79600 4.89410 5.01087 5.12959 5.21069 5.24381 5.44465 5.50776 5.52588 5.57297 5.69795 5.85943 5.88398 5.97936 6.07380 6.19358 6.27982 6.44380 6.63946 6.96483 7.11732 7.33131 7.41225 7.44983 7.78961 7.97170 8.15274 8.19479 8.90249 9.27399 10.44685 10.63170 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.002364 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.628221 B =11840.472315 C =12245.861789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.558 3.442 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.109 3.891 13 C 0.087 3.913 14 N -0.602 5.602 15 C 0.498 3.502 16 O -0.540 6.540 17 C 0.111 3.889 18 N -0.599 5.599 19 C 0.109 3.891 20 C -0.157 4.157 21 C 0.524 3.476 22 O -0.505 6.505 23 N -0.674 5.674 24 C 0.715 3.285 25 O -0.550 6.550 26 C 0.100 3.900 27 C 0.108 3.892 28 H 0.270 0.730 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.426 0.574 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.897 -13.326 -2.279 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.457 6.457 11 N -0.382 5.382 12 C -0.016 4.016 13 C -0.037 4.037 14 N -0.336 5.336 15 C 0.284 3.716 16 O -0.418 6.418 17 C -0.015 4.015 18 N -0.335 5.335 19 C -0.014 4.014 20 C -0.197 4.197 21 C 0.312 3.688 22 O -0.378 6.378 23 N -0.343 5.343 24 C 0.416 3.584 25 O -0.424 6.424 26 C -0.023 4.023 27 C -0.016 4.016 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.268 0.732 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.756 -13.994 -1.908 21.159 hybrid contribution 0.491 0.599 0.315 0.836 sum 16.247 -13.395 -1.593 21.117 Atomic orbital electron populations 1.70004 1.07117 1.27503 1.34770 1.25739 0.94634 1.00384 0.92552 0.86375 0.80125 0.81388 0.78912 1.19668 1.18843 1.20442 1.20929 0.93481 0.89136 1.54568 0.90852 1.18301 0.86969 0.82117 0.76145 1.90606 1.14383 1.85867 1.54818 1.48204 1.04366 1.05910 1.79750 1.21888 0.83475 1.00511 0.95733 1.22453 0.95531 0.84234 1.01456 1.48087 1.07569 1.06160 1.71736 1.20942 0.90245 0.83682 0.76749 1.90678 1.69649 1.31310 1.50136 1.21421 0.92236 0.81661 1.06218 1.46551 1.67712 1.14245 1.05030 1.21707 0.97324 0.98294 0.84055 1.22276 1.01187 0.98553 0.97703 1.20994 0.75556 0.88052 0.84187 1.90800 1.45430 1.18826 1.82702 1.44232 1.56058 1.17234 1.16756 1.15492 0.77980 0.80265 0.84652 1.91024 1.55217 1.69183 1.26943 1.22090 0.78594 1.01277 1.00330 1.21499 0.99308 0.85073 0.95768 0.91942 0.93387 0.87502 0.90388 0.89920 0.86541 0.86284 0.89918 0.87702 0.85432 0.86632 0.73223 0.91192 0.89042 0.88580 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.91 11.84 55.55 0.66 -21.25 16 2 C 0.09 2.28 5.50 -17.36 -0.10 2.19 16 3 Si 0.91 18.77 29.56 -169.99 -5.02 13.74 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -14.06 8.87 -35.63 -0.32 -14.38 16 8 H 0.07 1.67 5.66 -52.49 -0.30 1.37 16 9 C 0.56 14.79 7.62 -12.99 -0.10 14.69 16 10 O -0.57 -17.70 14.45 5.20 0.08 -17.63 16 11 N -0.64 -13.24 2.94 -173.88 -0.51 -13.75 16 12 C 0.11 1.67 6.51 -3.36 -0.02 1.65 16 13 C 0.09 1.06 6.52 -3.36 -0.02 1.04 16 14 N -0.60 -8.38 2.95 -172.21 -0.51 -8.88 16 15 C 0.50 6.66 7.76 -10.99 -0.09 6.57 16 16 O -0.54 -9.12 15.84 5.56 0.09 -9.03 16 17 C 0.11 0.98 4.16 -5.20 -0.02 0.96 16 18 N -0.60 -5.34 2.28 -181.17 -0.41 -5.75 16 19 C 0.11 0.59 6.64 -4.07 -0.03 0.56 16 20 C -0.16 -0.68 6.28 -27.81 -0.17 -0.86 16 21 C 0.52 4.39 7.76 -11.03 -0.09 4.30 16 22 O -0.51 -5.82 17.93 5.59 0.10 -5.72 16 23 N -0.67 -6.17 5.18 -16.03 -0.08 -6.26 16 24 C 0.71 7.99 8.21 -87.79 -0.72 7.27 16 25 O -0.55 -8.17 16.66 5.33 0.09 -8.08 16 26 C 0.10 1.61 6.59 -3.60 -0.02 1.59 16 27 C 0.11 1.99 6.60 -3.60 -0.02 1.97 16 28 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 1.68 5.34 -51.93 -0.28 1.40 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.64 5.91 -51.93 -0.31 0.33 16 33 H 0.12 0.58 7.40 -51.93 -0.38 0.20 16 34 H 0.12 1.05 7.20 -51.93 -0.37 0.67 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.28 7.79 -51.93 -0.40 -0.13 16 37 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.43 3.58 8.86 -40.82 -0.36 3.22 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.46 6.99 -51.93 -0.36 1.09 16 42 H 0.10 1.99 6.99 -51.93 -0.36 1.63 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -39.47 357.39 -7.09 -46.56 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.23 Total: 3.11 kcal Atomic # 6 Polarization: 29.27 SS G_CDS: -1.72 Total: 27.55 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.86 Total: -55.89 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: 0.35 Total: -40.46 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.47 -7.09 -46.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412662191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.982 kcal (2) G-P(sol) polarization free energy of solvation -39.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds