Wall clock time and date at job start Tue Mar 31 2020 20:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47124 * 90.00326 * 3 2 1 5 5 H 1.48509 * 109.46919 * 209.99974 * 3 2 1 6 6 H 1.48503 * 109.47384 * 329.99772 * 3 2 1 7 7 C 1.40054 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99966 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99975 * 354.97653 * 9 7 2 11 11 N 1.34777 * 120.00043 * 174.98237 * 9 7 2 12 12 C 1.46966 * 120.59305 * 4.93605 * 11 9 7 13 13 C 1.53814 * 108.39849 * 124.75935 * 12 11 9 14 14 N 1.46966 * 108.57810 * 49.63797 * 13 12 11 15 15 C 1.34774 * 120.59674 * 124.62713 * 14 13 12 16 16 O 1.21280 * 120.00320 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99675 * 0.02562 * 15 14 13 18 18 N 1.46494 * 109.47214 * 180.02562 * 17 15 14 19 19 C 1.46413 * 119.53765 * 90.00130 * 18 17 15 20 20 C 1.53032 * 109.52281 * 144.12064 * 19 18 17 21 21 C 1.50812 * 109.18195 * 46.70032 * 20 19 18 22 22 O 1.21239 * 120.01627 * 145.78855 * 21 20 19 23 23 N 1.34562 * 119.96326 * 325.76078 * 21 20 19 24 24 C 1.34289 * 120.93062 * 4.19741 * 23 21 20 25 25 O 1.21537 * 119.17632 * 192.26574 * 24 23 21 26 26 C 1.46968 * 118.81084 * 304.64938 * 14 13 12 27 27 C 1.46966 * 120.59464 * 185.21833 * 11 9 7 28 28 H 0.97000 * 119.99587 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.61294 * 244.54438 * 12 11 9 30 30 H 1.09002 * 109.60786 * 5.05936 * 12 11 9 31 31 H 1.09007 * 109.74220 * 289.85406 * 13 12 11 32 32 H 1.08995 * 109.67785 * 169.38601 * 13 12 11 33 33 H 1.09004 * 109.47093 * 300.00356 * 17 15 14 34 34 H 1.09006 * 109.47230 * 60.00331 * 17 15 14 35 35 H 1.09002 * 109.46517 * 264.14100 * 19 18 17 36 36 H 1.09003 * 109.45793 * 24.10674 * 19 18 17 37 37 H 1.08999 * 109.52116 * 166.61012 * 20 19 18 38 38 H 1.08999 * 109.52290 * 286.78916 * 20 19 18 39 39 H 0.97001 * 119.50163 * 184.45614 * 23 21 20 40 40 H 1.09002 * 109.60813 * 295.47678 * 26 14 13 41 41 H 1.08999 * 109.60718 * 174.97107 * 26 14 13 42 42 H 1.08998 * 109.61138 * 354.95013 * 27 11 9 43 43 H 1.08995 * 109.60532 * 115.28615 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0463 1.4001 5 1 3.5384 1.4400 -0.7001 6 1 1.4383 2.6527 -0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4824 0.0924 11 7 1.9450 -3.6455 -0.1010 12 6 3.4145 -3.6655 -0.1038 13 6 3.8894 -4.6047 1.0180 14 7 3.1635 -5.8773 0.9018 15 6 3.8334 -7.0422 0.7993 16 8 3.2235 -8.0862 0.7035 17 6 5.3404 -7.0477 0.8038 18 7 5.8242 -8.4250 0.6810 19 6 6.0667 -8.9890 -0.6482 20 6 7.2832 -9.9161 -0.5961 21 6 7.1615 -10.8267 0.5999 22 8 7.5802 -11.9630 0.5421 23 7 6.5884 -10.3771 1.7313 24 6 6.0442 -9.1507 1.7893 25 8 5.7391 -8.6885 2.8711 26 6 1.6940 -5.8568 0.8988 27 6 1.2191 -4.9182 -0.2172 28 1 -0.4849 0.8401 -0.0004 29 1 3.7736 -4.0299 -1.0662 30 1 3.7943 -2.6594 0.0741 31 1 3.6829 -4.1531 1.9884 32 1 4.9599 -4.7837 0.9181 33 1 5.7084 -6.4575 -0.0355 34 1 5.7026 -6.6169 1.7373 35 1 5.1919 -9.5554 -0.9676 36 1 6.2551 -8.1820 -1.3562 37 1 7.3246 -10.5141 -1.5064 38 1 8.1918 -9.3202 -0.5091 39 1 6.5717 -10.9458 2.5170 40 1 1.3313 -5.4944 1.8607 41 1 1.3145 -6.8623 0.7173 42 1 0.1488 -4.7395 -0.1144 43 1 1.4232 -5.3682 -1.1887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412662191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:38 Heat of formation + Delta-G solvation = -136.818720 kcal Electronic energy + Delta-G solvation = -29738.640514 eV Core-core repulsion = 25397.683391 eV Total energy + Delta-G solvation = -4340.957123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.74337 -41.22363 -40.07714 -39.50509 -37.59446 -37.15968 -35.74833 -34.80956 -34.42055 -32.87679 -32.17987 -29.42458 -28.79228 -27.37146 -25.99269 -24.73809 -24.14544 -23.46740 -21.68179 -20.40305 -19.73798 -19.33218 -18.95880 -18.58520 -17.97615 -17.69533 -17.34928 -17.02334 -16.52553 -16.38029 -16.07821 -15.84213 -15.72542 -15.69330 -15.51809 -15.45280 -14.73202 -14.60730 -14.31320 -14.14253 -13.66481 -13.48493 -13.39755 -13.09984 -12.99972 -12.80521 -12.70397 -12.53184 -12.30457 -12.28065 -11.95656 -11.91648 -11.86137 -11.38163 -11.37754 -11.16276 -10.90115 -10.04999 -9.92921 -9.75289 -8.96197 -8.25566 -6.79877 0.66038 1.18794 1.45772 1.46391 1.58036 1.61673 1.85007 2.09662 2.20455 2.28388 2.50242 2.86801 3.40185 3.47055 3.63509 3.65389 3.97885 3.98184 4.00557 4.16093 4.22197 4.35400 4.39674 4.43938 4.53883 4.55439 4.61782 4.71758 4.82098 4.87913 4.89576 4.95303 5.08821 5.15417 5.37282 5.44427 5.47632 5.76725 6.17169 6.27318 6.33420 6.43251 6.45284 6.92185 7.00864 7.12397 7.44874 8.49749 8.70866 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.002364 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.628221 B =11840.472315 C =12245.861789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.026 3.974 3 Si 0.995 3.005 4 H -0.265 1.265 5 H -0.239 1.239 6 H -0.282 1.282 7 C -0.562 4.562 8 H 0.105 0.895 9 C 0.540 3.460 10 O -0.635 6.635 11 N -0.646 5.646 12 C 0.102 3.898 13 C 0.094 3.906 14 N -0.604 5.604 15 C 0.495 3.505 16 O -0.581 6.581 17 C 0.113 3.887 18 N -0.595 5.595 19 C 0.104 3.896 20 C -0.144 4.144 21 C 0.522 3.478 22 O -0.542 6.542 23 N -0.675 5.675 24 C 0.712 3.288 25 O -0.595 6.595 26 C 0.113 3.887 27 C 0.114 3.886 28 H 0.272 0.728 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.424 0.576 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.311 -12.522 -3.830 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.161 1.161 6 H -0.207 1.207 7 C -0.598 4.598 8 H 0.123 0.877 9 C 0.346 3.654 10 O -0.523 6.523 11 N -0.383 5.383 12 C -0.021 4.021 13 C -0.029 4.029 14 N -0.337 5.337 15 C 0.283 3.717 16 O -0.461 6.461 17 C -0.013 4.013 18 N -0.330 5.330 19 C -0.017 4.017 20 C -0.184 4.184 21 C 0.312 3.688 22 O -0.417 6.417 23 N -0.343 5.343 24 C 0.413 3.587 25 O -0.472 6.472 26 C -0.012 4.012 27 C -0.011 4.011 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.190 0.810 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.261 -13.236 -3.498 24.453 hybrid contribution -0.904 0.203 0.789 1.217 sum 19.356 -13.033 -2.709 23.492 Atomic orbital electron populations 1.70211 1.09774 1.28810 1.36815 1.27038 0.95412 1.05161 0.91255 0.85046 0.79119 0.75078 0.79263 1.18966 1.16122 1.20705 1.21513 0.95120 0.89177 1.54018 0.87711 1.18770 0.86566 0.84234 0.75816 1.90558 1.17029 1.87302 1.57374 1.48056 1.06947 1.04912 1.78430 1.22211 0.79780 1.01610 0.98492 1.22538 0.98355 0.82507 0.99466 1.48150 1.06315 1.07418 1.71857 1.21875 0.92242 0.82485 0.75070 1.90669 1.70989 1.32678 1.51759 1.21676 0.88252 0.82410 1.08938 1.46722 1.66449 1.14199 1.05604 1.22015 0.97104 0.99689 0.82875 1.22377 1.01935 0.97916 0.96136 1.21850 0.74124 0.88118 0.84703 1.90789 1.47027 1.20635 1.83262 1.44291 1.55860 1.16752 1.17354 1.15727 0.77655 0.80489 0.84790 1.90992 1.57166 1.70270 1.28821 1.21710 0.80952 1.00188 0.98337 1.21452 0.97345 0.84849 0.97435 0.91830 0.90521 0.87731 0.91621 0.84020 0.81021 0.85628 0.91453 0.83395 0.83348 0.83670 0.73506 0.92934 0.89144 0.92176 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.05 11.84 21.84 0.26 -48.79 16 2 C 0.03 1.37 5.50 85.31 0.47 1.84 16 3 Si 1.00 37.85 29.56 68.60 2.03 39.88 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.24 -8.00 7.11 99.48 0.71 -7.30 16 6 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.56 -28.90 8.87 24.83 0.22 -28.68 16 8 H 0.11 4.52 5.66 -2.91 -0.02 4.51 16 9 C 0.54 29.39 7.62 86.36 0.66 30.04 16 10 O -0.64 -41.44 14.45 -4.30 -0.06 -41.50 16 11 N -0.65 -26.55 2.94 -822.26 -2.42 -28.97 16 12 C 0.10 2.80 6.51 86.56 0.56 3.37 16 13 C 0.09 1.93 6.52 86.56 0.56 2.50 16 14 N -0.60 -15.46 2.95 -817.15 -2.41 -17.87 16 15 C 0.49 11.85 7.76 87.66 0.68 12.53 16 16 O -0.58 -18.92 15.84 -3.03 -0.05 -18.97 16 17 C 0.11 1.46 4.16 85.63 0.36 1.81 16 18 N -0.59 -8.44 2.28 -845.65 -1.93 -10.37 16 19 C 0.10 0.66 6.64 86.41 0.57 1.23 16 20 C -0.14 -0.65 6.28 29.89 0.19 -0.46 16 21 C 0.52 7.80 7.76 87.73 0.68 8.48 16 22 O -0.54 -12.01 17.93 -2.90 -0.05 -12.07 16 23 N -0.68 -11.77 5.18 -441.70 -2.29 -14.06 16 24 C 0.71 14.76 8.21 179.36 1.47 16.23 16 25 O -0.60 -17.28 16.66 -3.83 -0.06 -17.34 16 26 C 0.11 3.66 6.59 86.41 0.57 4.23 16 27 C 0.11 4.29 6.60 86.41 0.57 4.86 16 28 H 0.27 14.73 8.29 -92.71 -0.77 13.96 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 2.93 5.34 -2.39 -0.01 2.92 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.14 1.27 5.91 -2.39 -0.01 1.26 16 33 H 0.17 0.35 7.40 -2.38 -0.02 0.33 16 34 H 0.13 1.60 7.20 -2.38 -0.02 1.58 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.15 -0.26 7.79 -2.39 -0.02 -0.28 16 37 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.42 7.26 8.86 -92.71 -0.82 6.44 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 2.96 6.99 -2.39 -0.02 2.94 16 42 H 0.06 2.69 6.99 -2.39 -0.02 2.67 16 43 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -95.02 357.39 0.85 -94.17 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.26 Total: 17.90 kcal Atomic # 6 Polarization: 50.41 SS G_CDS: 7.57 Total: 57.98 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -8.79 Total: -120.05 kcal Atomic # 8 Polarization: -89.65 SS G_CDS: -0.23 Total: -89.87 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -95.02 0.85 -94.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412662191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.646 kcal (2) G-P(sol) polarization free energy of solvation -95.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds