Wall clock time and date at job start Tue Mar 31 2020 20:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47420 * 240.00343 * 3 2 1 5 5 H 1.48508 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47176 * 119.99748 * 3 2 1 7 7 C 1.39942 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99967 * 197.84226 * 7 2 1 9 9 C 1.41400 * 120.00241 * 17.84763 * 7 2 1 10 10 C 1.40717 * 120.24417 * 204.38721 * 9 7 2 11 11 C 1.37613 * 119.74480 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25016 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75199 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47460 * 89.99995 * 13 12 11 15 15 C 1.34772 * 120.00133 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00249 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00121 * 179.97438 * 15 14 13 18 18 N 1.46496 * 109.47567 * 179.97438 * 17 15 14 19 19 C 1.34771 * 120.00554 * 180.02562 * 18 17 15 20 20 O 1.21551 * 120.00104 * 359.97438 * 19 18 17 21 21 C 1.47852 * 120.00301 * 180.02562 * 19 18 17 22 22 C 1.39569 * 120.14256 * 179.97438 * 21 19 18 23 23 C 1.37958 * 119.85307 * 179.97438 * 22 21 19 24 24 C 1.38362 * 120.14146 * 0.02562 * 23 22 21 25 25 C 1.38361 * 120.29271 * 359.97438 * 24 23 22 26 26 C 1.37953 * 120.14426 * 0.02562 * 25 24 23 27 27 C 1.38639 * 120.49869 * 0.25224 * 12 11 10 28 28 C 1.37618 * 120.24804 * 359.44522 * 27 12 11 29 29 H 0.96994 * 119.99970 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12925 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.87852 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.46764 * 329.99383 * 13 12 11 33 33 H 1.09003 * 109.46764 * 209.99773 * 13 12 11 34 34 H 0.97003 * 120.00034 * 359.97438 * 14 13 12 35 35 H 1.09010 * 109.47102 * 59.99734 * 17 15 14 36 36 H 1.09000 * 109.47474 * 300.00416 * 17 15 14 37 37 H 0.97008 * 119.99744 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.07516 * 359.70234 * 22 21 19 39 39 H 1.07995 * 119.93158 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.85184 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.92369 * 180.02562 * 25 24 23 42 42 H 1.08007 * 120.06865 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.87677 * 179.70915 * 27 12 11 44 44 H 1.07998 * 120.12792 * 180.26920 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3764 10 6 1.8257 -3.6499 0.0824 11 6 1.1798 -4.8065 -0.2902 12 6 0.0666 -4.7502 -1.1147 13 6 -0.6318 -6.0238 -1.5162 14 7 -1.6749 -6.3384 -0.5369 15 6 -2.4343 -7.4410 -0.6919 16 8 -2.2544 -8.1726 -1.6423 17 6 -3.5069 -7.7650 0.3158 18 7 -4.1860 -9.0030 -0.0745 19 6 -5.1886 -9.4895 0.6834 20 8 -5.5292 -8.9014 1.6912 21 6 -5.8735 -10.7393 0.2897 22 6 -6.9117 -11.2461 1.0727 23 6 -7.5470 -12.4125 0.6994 24 6 -7.1565 -13.0797 -0.4480 25 6 -6.1280 -12.5827 -1.2286 26 6 -5.4845 -11.4173 -0.8666 27 6 -0.4054 -3.5315 -1.5773 28 6 0.2210 -2.3618 -1.2125 29 1 -0.4850 0.8400 -0.0004 30 1 2.6934 -3.6962 0.7238 31 1 1.5413 -5.7617 0.0610 32 1 0.0911 -6.8389 -1.5517 33 1 -1.0836 -5.8958 -2.4999 34 1 -1.8186 -5.7535 0.2235 35 1 -4.2301 -6.9500 0.3515 36 1 -3.0549 -7.8927 1.2994 37 1 -3.9139 -9.4726 -0.8786 38 1 -7.2142 -10.7288 1.9711 39 1 -8.3508 -12.8055 1.3042 40 1 -7.6568 -13.9927 -0.7356 41 1 -5.8283 -13.1081 -2.1233 42 1 -4.6815 -11.0306 -1.4766 43 1 -1.2706 -3.4997 -2.2229 44 1 -0.1510 -1.4132 -1.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413183229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:39 Heat of formation + Delta-G solvation = -35.836965 kcal Electronic energy + Delta-G solvation = -26333.396548 eV Core-core repulsion = 22407.667586 eV Total energy + Delta-G solvation = -3925.728962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.57718 -39.56150 -38.41417 -37.72478 -35.05367 -34.55210 -33.53056 -31.78923 -31.29970 -30.56034 -29.42977 -28.36249 -26.49930 -24.13917 -23.44057 -22.77108 -21.13981 -20.70216 -20.51247 -20.18309 -18.72790 -17.44028 -16.92064 -16.66089 -16.09399 -16.02341 -15.63721 -15.42008 -14.94852 -14.85838 -14.70885 -14.21274 -13.97795 -13.89775 -13.78926 -13.54274 -13.12908 -13.04585 -12.64965 -12.56597 -12.09366 -12.04969 -11.96964 -11.74303 -11.47311 -11.19263 -11.10213 -10.80182 -10.52223 -10.25710 -10.02274 -9.73777 -9.53842 -9.50462 -9.38081 -9.26997 -9.24824 -8.82707 -7.63031 -7.51114 -6.91599 -4.51452 0.49746 0.98271 2.45443 2.56142 2.63718 2.77269 2.93335 2.99041 3.00458 3.07036 3.54211 3.60514 3.82101 4.36270 4.44247 4.47973 4.55454 4.74090 4.81975 4.98694 5.10389 5.19130 5.22878 5.42888 5.54279 5.59296 5.71060 5.81322 5.92796 6.00730 6.04523 6.05895 6.15663 6.20713 6.28017 6.48679 6.63796 6.81823 6.92938 7.12519 7.21015 7.24892 7.45730 7.57385 7.75857 7.90471 7.94402 7.95411 8.14072 8.24296 8.48695 8.73815 8.81303 10.02300 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.001611 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.227343 B =17372.575254 C =17865.624956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.230 4.230 11 C -0.069 4.069 12 C -0.250 4.250 13 C 0.185 3.815 14 N -0.709 5.709 15 C 0.502 3.498 16 O -0.554 6.554 17 C 0.097 3.903 18 N -0.712 5.712 19 C 0.559 3.441 20 O -0.538 6.538 21 C -0.133 4.133 22 C -0.060 4.060 23 C -0.130 4.130 24 C -0.095 4.095 25 C -0.128 4.128 26 C -0.085 4.085 27 C -0.080 4.080 28 C -0.169 4.169 29 H 0.283 0.717 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.405 0.595 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.411 0.589 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.840 -18.360 -0.740 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.087 4.087 12 C -0.252 4.252 13 C 0.064 3.936 14 N -0.359 5.359 15 C 0.287 3.713 16 O -0.433 6.433 17 C -0.030 4.030 18 N -0.367 5.367 19 C 0.347 3.653 20 O -0.416 6.416 21 C -0.136 4.136 22 C -0.079 4.079 23 C -0.148 4.148 24 C -0.114 4.114 25 C -0.146 4.146 26 C -0.103 4.103 27 C -0.099 4.099 28 C -0.188 4.188 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.250 0.750 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.106 0.894 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.114 -18.252 -0.706 21.917 hybrid contribution 0.456 0.938 0.033 1.043 sum -11.658 -17.314 -0.673 20.884 Atomic orbital electron populations 1.69802 1.07664 1.29667 1.33922 1.25956 0.94766 1.01523 0.92077 0.86331 0.80182 0.79952 0.80125 1.18694 1.20221 1.18880 1.19650 0.98230 0.91300 1.39439 0.90248 1.17679 0.90861 0.92060 0.87978 1.20974 1.03998 0.92794 1.07176 1.20402 0.95080 0.96520 0.96742 1.18951 1.02263 0.92633 1.11342 1.19998 0.87850 0.95318 0.90461 1.46498 1.35438 1.24906 1.29073 1.20458 0.82649 0.81717 0.86438 1.90656 1.70318 1.49838 1.32481 1.21144 0.95040 0.88503 0.98309 1.45609 1.35692 1.26075 1.29319 1.18263 0.79428 0.84569 0.83079 1.90787 1.64973 1.60230 1.25581 1.19907 0.99591 0.96390 0.97709 1.21310 0.93041 0.94830 0.98681 1.21181 1.00570 0.95555 0.97475 1.21410 0.96197 0.99385 0.94385 1.21145 0.96708 0.96337 1.00372 1.21426 0.98806 0.94911 0.95183 1.20558 0.98031 0.92559 0.98801 1.21311 0.99543 0.96781 1.01214 0.90563 0.88863 0.89365 0.92204 0.92149 0.75981 0.88103 0.88131 0.74967 0.84540 0.85254 0.85539 0.85252 0.85268 0.89381 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.28 10.95 55.55 0.61 -18.67 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.78 29.60 -169.99 -5.03 12.75 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.53 9.05 -37.74 -0.34 -11.87 16 8 H 0.08 1.92 7.91 -52.48 -0.41 1.51 16 9 C 0.12 2.94 5.58 -106.82 -0.60 2.35 16 10 C -0.23 -5.28 9.80 -38.87 -0.38 -5.66 16 11 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 12 C -0.25 -4.93 5.27 -104.33 -0.55 -5.48 16 13 C 0.19 3.11 5.79 -5.20 -0.03 3.08 16 14 N -0.71 -10.29 5.55 -61.48 -0.34 -10.63 16 15 C 0.50 7.01 7.90 -10.99 -0.09 6.93 16 16 O -0.55 -9.13 15.67 5.56 0.09 -9.04 16 17 C 0.10 1.14 6.15 -5.20 -0.03 1.10 16 18 N -0.71 -8.25 5.48 -62.43 -0.34 -8.59 16 19 C 0.56 6.99 7.77 -12.33 -0.10 6.89 16 20 O -0.54 -8.27 16.35 5.32 0.09 -8.18 16 21 C -0.13 -1.37 5.87 -104.97 -0.62 -1.99 16 22 C -0.06 -0.56 9.60 -39.19 -0.38 -0.93 16 23 C -0.13 -0.92 10.03 -39.64 -0.40 -1.32 16 24 C -0.10 -0.61 10.04 -39.49 -0.40 -1.01 16 25 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 26 C -0.08 -0.71 9.54 -39.19 -0.37 -1.09 16 27 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 28 C -0.17 -4.12 8.70 -38.87 -0.34 -4.45 16 29 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 30 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.41 5.48 8.46 -40.82 -0.35 5.14 16 35 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.41 4.46 5.47 -40.82 -0.22 4.24 16 38 H 0.14 1.27 7.65 -52.49 -0.40 0.87 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.95 6.41 -52.48 -0.34 0.61 16 43 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -29.24 381.65 -10.45 -39.69 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.40 Total: 13.85 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -5.86 Total: -16.93 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.07 Total: -37.89 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.17 Total: -17.23 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.24 -10.45 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413183229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.853 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds