Wall clock time and date at job start Tue Mar 31 2020 20:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47420 * 240.00343 * 3 2 1 5 5 H 1.48508 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47176 * 119.99748 * 3 2 1 7 7 C 1.39942 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99967 * 197.84226 * 7 2 1 9 9 C 1.41400 * 120.00241 * 17.84763 * 7 2 1 10 10 C 1.40717 * 120.24417 * 204.38721 * 9 7 2 11 11 C 1.37613 * 119.74480 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25016 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75199 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47460 * 89.99995 * 13 12 11 15 15 C 1.34772 * 120.00133 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00249 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00121 * 179.97438 * 15 14 13 18 18 N 1.46496 * 109.47567 * 179.97438 * 17 15 14 19 19 C 1.34771 * 120.00554 * 180.02562 * 18 17 15 20 20 O 1.21551 * 120.00104 * 359.97438 * 19 18 17 21 21 C 1.47852 * 120.00301 * 180.02562 * 19 18 17 22 22 C 1.39569 * 120.14256 * 179.97438 * 21 19 18 23 23 C 1.37958 * 119.85307 * 179.97438 * 22 21 19 24 24 C 1.38362 * 120.14146 * 0.02562 * 23 22 21 25 25 C 1.38361 * 120.29271 * 359.97438 * 24 23 22 26 26 C 1.37953 * 120.14426 * 0.02562 * 25 24 23 27 27 C 1.38639 * 120.49869 * 0.25224 * 12 11 10 28 28 C 1.37618 * 120.24804 * 359.44522 * 27 12 11 29 29 H 0.96994 * 119.99970 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12925 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.87852 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.46764 * 329.99383 * 13 12 11 33 33 H 1.09003 * 109.46764 * 209.99773 * 13 12 11 34 34 H 0.97003 * 120.00034 * 359.97438 * 14 13 12 35 35 H 1.09010 * 109.47102 * 59.99734 * 17 15 14 36 36 H 1.09000 * 109.47474 * 300.00416 * 17 15 14 37 37 H 0.97008 * 119.99744 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.07516 * 359.70234 * 22 21 19 39 39 H 1.07995 * 119.93158 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.85184 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.92369 * 180.02562 * 25 24 23 42 42 H 1.08007 * 120.06865 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.87677 * 179.70915 * 27 12 11 44 44 H 1.07998 * 120.12792 * 180.26920 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3764 10 6 1.8257 -3.6499 0.0824 11 6 1.1798 -4.8065 -0.2902 12 6 0.0666 -4.7502 -1.1147 13 6 -0.6318 -6.0238 -1.5162 14 7 -1.6749 -6.3384 -0.5369 15 6 -2.4343 -7.4410 -0.6919 16 8 -2.2544 -8.1726 -1.6423 17 6 -3.5069 -7.7650 0.3158 18 7 -4.1860 -9.0030 -0.0745 19 6 -5.1886 -9.4895 0.6834 20 8 -5.5292 -8.9014 1.6912 21 6 -5.8735 -10.7393 0.2897 22 6 -6.9117 -11.2461 1.0727 23 6 -7.5470 -12.4125 0.6994 24 6 -7.1565 -13.0797 -0.4480 25 6 -6.1280 -12.5827 -1.2286 26 6 -5.4845 -11.4173 -0.8666 27 6 -0.4054 -3.5315 -1.5773 28 6 0.2210 -2.3618 -1.2125 29 1 -0.4850 0.8400 -0.0004 30 1 2.6934 -3.6962 0.7238 31 1 1.5413 -5.7617 0.0610 32 1 0.0911 -6.8389 -1.5517 33 1 -1.0836 -5.8958 -2.4999 34 1 -1.8186 -5.7535 0.2235 35 1 -4.2301 -6.9500 0.3515 36 1 -3.0549 -7.8927 1.2994 37 1 -3.9139 -9.4726 -0.8786 38 1 -7.2142 -10.7288 1.9711 39 1 -8.3508 -12.8055 1.3042 40 1 -7.6568 -13.9927 -0.7356 41 1 -5.8283 -13.1081 -2.1233 42 1 -4.6815 -11.0306 -1.4766 43 1 -1.2706 -3.4997 -2.2229 44 1 -0.1510 -1.4132 -1.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413183229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:38 Heat of formation + Delta-G solvation = -52.687268 kcal Electronic energy + Delta-G solvation = -26334.127232 eV Core-core repulsion = 22407.667586 eV Total energy + Delta-G solvation = -3926.459646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.51269 -40.64123 -39.48429 -39.12085 -36.44929 -35.67257 -35.11644 -32.57696 -32.07820 -31.87300 -31.18335 -29.59183 -27.93452 -25.41982 -24.47183 -23.38858 -22.90624 -21.85725 -21.66085 -21.55826 -19.60383 -19.24300 -17.86108 -17.72108 -17.19851 -17.03724 -16.94953 -16.53800 -16.04859 -15.94058 -15.65777 -15.43829 -15.39640 -15.33357 -14.72060 -14.43764 -14.22385 -14.14436 -14.04514 -13.82824 -13.57475 -13.47018 -13.26320 -12.82186 -12.72871 -12.62568 -12.50284 -12.11935 -12.02842 -11.54948 -11.30153 -11.24170 -11.17984 -10.98759 -10.43827 -10.09880 -9.96064 -9.90807 -9.40203 -9.29074 -8.67830 -6.37745 -0.16921 0.40890 0.82830 1.13558 1.38153 1.45735 1.46414 1.50312 1.77904 1.78527 2.19049 2.41667 2.76308 2.88742 3.54278 3.67583 3.76651 3.90638 4.01803 4.17575 4.23787 4.24746 4.32212 4.33292 4.46442 4.51368 4.52860 4.66276 4.78622 4.85106 5.04574 5.05551 5.11062 5.13679 5.32974 5.34598 5.38055 5.43243 5.44775 5.50599 5.67921 5.90458 5.94285 6.08027 6.19143 6.33769 6.35844 6.48455 6.67360 6.91125 6.99941 7.00898 7.07644 8.28330 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.001611 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.227343 B =17372.575254 C =17865.624956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.085 3.915 10 C -0.244 4.244 11 C -0.067 4.067 12 C -0.230 4.230 13 C 0.194 3.806 14 N -0.706 5.706 15 C 0.511 3.489 16 O -0.575 6.575 17 C 0.102 3.898 18 N -0.708 5.708 19 C 0.558 3.442 20 O -0.575 6.575 21 C -0.157 4.157 22 C -0.077 4.077 23 C -0.130 4.130 24 C -0.089 4.089 25 C -0.130 4.130 26 C -0.090 4.090 27 C -0.082 4.082 28 C -0.192 4.192 29 H 0.289 0.711 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.412 0.588 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.415 0.585 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.665 -20.560 -1.356 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.527 4.527 8 H 0.094 0.906 9 C 0.083 3.917 10 C -0.264 4.264 11 C -0.086 4.086 12 C -0.231 4.231 13 C 0.072 3.928 14 N -0.357 5.357 15 C 0.297 3.703 16 O -0.456 6.456 17 C -0.025 4.025 18 N -0.363 5.363 19 C 0.347 3.653 20 O -0.456 6.456 21 C -0.160 4.160 22 C -0.096 4.096 23 C -0.148 4.148 24 C -0.107 4.107 25 C -0.147 4.147 26 C -0.109 4.109 27 C -0.101 4.101 28 C -0.212 4.212 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.248 0.752 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.255 0.745 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.154 0.846 43 H 0.124 0.876 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.938 -20.470 -1.327 24.252 hybrid contribution 0.623 1.378 0.169 1.522 sum -12.315 -19.092 -1.158 22.749 Atomic orbital electron populations 1.69850 1.08936 1.30763 1.34829 1.26735 0.95486 1.04465 0.91186 0.85282 0.78853 0.75749 0.80064 1.18566 1.19212 1.18366 1.19882 0.98452 0.92621 1.41703 0.90573 1.18016 0.91728 0.93106 0.88881 1.21164 1.04565 0.93064 1.07600 1.20697 0.94761 0.96944 0.96167 1.19210 1.01429 0.93278 1.09214 1.19806 0.88353 0.93774 0.90896 1.46259 1.35148 1.25383 1.28905 1.20656 0.82463 0.80884 0.86265 1.90653 1.70953 1.50482 1.33533 1.21124 0.94521 0.88960 0.97897 1.45602 1.35435 1.25926 1.29324 1.18653 0.79158 0.85004 0.82459 1.90757 1.66157 1.61517 1.27174 1.19868 1.00706 0.96204 0.99257 1.21401 0.93534 0.95978 0.98647 1.21481 1.00697 0.94585 0.98027 1.21830 0.95484 0.99951 0.93415 1.21504 0.96380 0.95673 1.01168 1.21569 0.99223 0.95494 0.94610 1.20775 0.98245 0.92353 0.98699 1.21263 1.00394 0.97131 1.02409 0.90002 0.88473 0.86462 0.91489 0.92001 0.75221 0.87262 0.87054 0.74465 0.85558 0.82932 0.82426 0.82777 0.84630 0.87615 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.38 10.95 21.83 0.24 -41.15 16 2 C 0.04 1.82 5.14 85.26 0.44 2.25 16 3 Si 0.98 37.06 29.60 68.60 2.03 39.09 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.50 -26.01 9.05 23.46 0.21 -25.80 16 8 H 0.08 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.09 4.41 5.58 -21.29 -0.12 4.29 16 10 C -0.24 -11.31 9.80 22.73 0.22 -11.09 16 11 C -0.07 -2.66 9.67 22.22 0.21 -2.45 16 12 C -0.23 -8.71 5.27 -19.67 -0.10 -8.81 16 13 C 0.19 6.06 5.79 85.63 0.50 6.56 16 14 N -0.71 -19.02 5.55 -466.80 -2.59 -21.61 16 15 C 0.51 13.33 7.90 87.66 0.69 14.03 16 16 O -0.58 -17.92 15.67 -3.04 -0.05 -17.97 16 17 C 0.10 2.25 6.15 85.63 0.53 2.78 16 18 N -0.71 -15.87 5.48 -469.70 -2.57 -18.45 16 19 C 0.56 13.95 7.77 86.79 0.67 14.62 16 20 O -0.58 -18.02 16.35 -3.88 -0.06 -18.08 16 21 C -0.16 -3.19 5.87 -20.09 -0.12 -3.31 16 22 C -0.08 -1.40 9.60 22.52 0.22 -1.18 16 23 C -0.13 -1.58 10.03 22.23 0.22 -1.36 16 24 C -0.09 -0.85 10.04 22.33 0.22 -0.63 16 25 C -0.13 -1.44 10.03 22.23 0.22 -1.22 16 26 C -0.09 -1.40 9.54 22.52 0.21 -1.18 16 27 C -0.08 -3.49 9.67 22.22 0.21 -3.27 16 28 C -0.19 -9.62 8.70 22.73 0.20 -9.42 16 29 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 30 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 33 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.41 10.32 8.46 -92.71 -0.78 9.54 16 35 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.42 8.61 5.47 -92.70 -0.51 8.10 16 38 H 0.13 2.45 7.65 -2.91 -0.02 2.43 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 41 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.14 1.81 6.41 -2.91 -0.02 1.79 16 43 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 44 H 0.10 5.29 6.16 -2.91 -0.02 5.27 16 Total: -1.00 -64.88 381.65 1.41 -63.47 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.24 Total: 39.88 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 4.65 Total: -25.19 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -4.92 Total: -81.20 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.11 Total: -36.05 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -64.88 1.41 -63.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413183229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.788 kcal (2) G-P(sol) polarization free energy of solvation -64.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds