Wall clock time and date at job start Tue Mar 31 2020 20:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48495 * 109.47618 * 274.91085 * 3 2 1 5 5 H 1.48500 * 109.46901 * 34.91089 * 3 2 1 6 6 H 1.48503 * 109.46934 * 154.90549 * 3 2 1 7 7 C 1.37873 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99570 * 355.19272 * 7 2 1 9 9 C 1.50697 * 120.00431 * 175.18978 * 7 2 1 10 10 O 1.42907 * 110.64074 * 62.25758 * 9 7 2 11 11 C 1.55151 * 110.87382 * 299.01032 * 9 7 2 12 12 C 1.55129 * 101.48946 * 205.89808 * 11 9 7 13 13 N 1.47430 * 104.72230 * 37.29171 * 12 11 9 14 14 C 1.34772 * 125.64924 * 155.81665 * 13 12 11 15 15 O 1.21590 * 119.99863 * 179.69475 * 14 13 12 16 16 N 1.34773 * 120.00053 * 359.69962 * 14 13 12 17 17 C 1.40168 * 120.00040 * 185.70788 * 16 14 13 18 18 C 1.38705 * 120.08859 * 24.74496 * 17 16 14 19 19 C 1.38211 * 119.98249 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.16423 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.17636 * 0.02562 * 20 19 18 22 22 C 1.38551 * 120.01349 * 359.97438 * 21 20 19 23 23 O 1.35985 * 120.07992 * 180.02562 * 22 21 20 24 24 C 1.42905 * 116.99885 * 359.97438 * 23 22 21 25 25 C 1.52999 * 109.46948 * 180.02562 * 24 23 22 26 26 F 1.39902 * 109.47110 * 64.99935 * 25 24 23 27 27 C 1.47021 * 108.70173 * 335.55867 * 13 12 11 28 28 H 0.96998 * 120.00974 * 359.97438 * 1 2 3 29 29 H 0.96699 * 113.99917 * 61.68559 * 10 9 7 30 30 H 1.09000 * 111.00249 * 324.13603 * 11 9 7 31 31 H 1.09004 * 111.00735 * 87.98904 * 11 9 7 32 32 H 1.09000 * 110.49628 * 278.45664 * 12 11 9 33 33 H 1.08996 * 110.35023 * 156.05703 * 12 11 9 34 34 H 0.97006 * 120.00048 * 5.70037 * 16 14 13 35 35 H 1.07993 * 120.00703 * 0.04280 * 18 17 16 36 36 H 1.07997 * 119.91337 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.91272 * 179.72456 * 20 19 18 38 38 H 1.08003 * 119.99353 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.47245 * 299.99765 * 24 23 22 40 40 H 1.08996 * 109.46993 * 60.00202 * 24 23 22 41 41 H 1.08992 * 109.47098 * 184.99844 * 25 24 23 42 42 H 1.09001 * 109.47412 * 305.00164 * 25 24 23 43 43 H 1.09000 * 109.88661 * 120.70199 * 27 13 12 44 44 H 1.09008 * 109.88348 * 241.71280 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3928 2.1065 -1.3948 5 1 1.5022 2.6205 0.8013 6 1 3.5946 1.4125 0.5938 7 6 2.0046 -1.1939 -0.0005 8 1 1.4674 -2.1277 0.0774 9 6 3.5076 -1.1961 -0.1100 10 8 4.0950 -0.5258 1.0071 11 6 3.9658 -0.5471 -1.4426 12 6 5.3402 -1.2317 -1.6632 13 7 5.1481 -2.6169 -1.1966 14 6 5.8684 -3.6856 -1.5908 15 8 5.6243 -4.7855 -1.1334 16 7 6.8592 -3.5352 -2.4919 17 6 7.5287 -4.6606 -2.9917 18 6 6.9017 -5.8978 -2.9960 19 6 7.5641 -7.0062 -3.4889 20 6 8.8514 -6.8853 -3.9789 21 6 9.4827 -5.6554 -3.9779 22 6 8.8255 -4.5395 -3.4855 23 8 9.4450 -3.3289 -3.4843 24 6 10.7747 -3.2801 -4.0055 25 6 11.3031 -1.8468 -3.9215 26 9 11.4177 -1.4700 -2.5790 27 6 4.0445 -2.6384 -0.2253 28 1 -0.4851 0.8399 0.0004 29 1 3.9023 -0.9393 1.8597 30 1 3.2736 -0.7838 -2.2507 31 1 4.0815 0.5312 -1.3326 32 1 6.1121 -0.7366 -1.0739 33 1 5.6038 -1.2208 -2.7208 34 1 7.1090 -2.6481 -2.7946 35 1 5.8961 -5.9950 -2.6145 36 1 7.0747 -7.9689 -3.4921 37 1 9.3668 -7.7549 -4.3590 38 1 10.4884 -5.5644 -4.3610 39 1 11.4180 -3.9389 -3.4222 40 1 10.7693 -3.6053 -5.0458 41 1 12.2813 -1.7916 -4.3990 42 1 10.6121 -1.1743 -4.4298 43 1 3.2540 -3.3013 -0.5770 44 1 4.4100 -2.9790 0.7436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413582627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:48 Heat of formation + Delta-G solvation = -113.954893 kcal Electronic energy + Delta-G solvation = -29607.435939 eV Core-core repulsion = 25247.550305 eV Total energy + Delta-G solvation = -4359.885635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.95495 -40.88928 -39.72862 -38.13030 -37.23822 -34.67944 -34.55788 -32.44596 -31.50398 -30.68901 -29.90528 -28.94980 -28.20638 -25.29149 -24.36953 -22.92923 -22.20673 -22.04033 -19.97473 -19.58432 -18.85246 -18.02182 -17.43134 -17.14296 -17.02337 -16.22088 -15.96903 -15.62985 -15.25772 -15.13725 -15.08669 -14.82191 -14.56054 -14.51042 -13.99890 -13.75650 -13.35312 -13.04085 -12.97754 -12.84765 -12.53722 -12.16941 -11.92733 -11.74251 -11.70045 -11.65290 -11.44665 -11.34787 -11.16980 -11.14911 -10.62735 -10.47838 -10.33325 -10.11063 -9.71417 -9.00731 -8.70567 -8.68445 -8.49919 -8.26915 -7.73456 -6.22873 -4.35215 1.24297 1.30240 2.64765 2.80585 3.27575 3.28475 3.41750 3.64175 3.80410 4.03651 4.07666 4.28285 4.41495 4.46827 4.59107 4.71242 4.74305 4.93662 5.05968 5.09906 5.11368 5.26418 5.30558 5.33761 5.46207 5.56397 5.69277 5.75501 5.82047 5.99660 6.06787 6.15257 6.41909 6.44523 6.49200 6.54200 6.59646 6.63978 6.75637 7.06992 7.19672 7.23137 7.46764 8.10144 8.18397 8.70621 8.72150 8.86905 9.39792 10.87213 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003068 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.955302 B = 9123.287961 C =10620.730942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.088 3.912 3 Si 0.865 3.135 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.213 1.213 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.216 3.784 10 O -0.571 6.571 11 C -0.120 4.120 12 C 0.098 3.902 13 N -0.621 5.621 14 C 0.718 3.282 15 O -0.580 6.580 16 N -0.678 5.678 17 C 0.157 3.843 18 C -0.098 4.098 19 C -0.130 4.130 20 C -0.110 4.110 21 C -0.188 4.188 22 C 0.088 3.912 23 O -0.314 6.314 24 C 0.028 3.972 25 C 0.067 3.933 26 F -0.209 7.209 27 C 0.114 3.886 28 H 0.267 0.733 29 H 0.364 0.636 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.409 0.591 35 H 0.157 0.843 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.406 -6.774 -11.573 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.117 4.117 3 Si 0.693 3.307 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.135 1.135 7 C -0.588 4.588 8 H 0.097 0.903 9 C 0.176 3.824 10 O -0.378 6.378 11 C -0.158 4.158 12 C -0.025 4.025 13 N -0.357 5.357 14 C 0.421 3.579 15 O -0.458 6.458 16 N -0.325 5.325 17 C 0.060 3.940 18 C -0.119 4.119 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.207 4.207 22 C 0.040 3.960 23 O -0.228 6.228 24 C -0.048 4.048 25 C 0.012 3.988 26 F -0.190 7.190 27 C -0.009 4.009 28 H 0.076 0.924 29 H 0.212 0.788 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.245 0.755 35 H 0.175 0.825 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.187 -6.874 -11.581 25.955 hybrid contribution 0.394 0.865 0.113 0.957 sum 22.581 -6.009 -11.468 26.029 Atomic orbital electron populations 1.69930 1.06737 1.27627 1.47921 1.24948 0.94566 0.99739 0.92455 0.87249 0.83414 0.82088 0.77984 1.21375 1.22574 1.13542 1.21163 0.88188 0.95260 1.54233 0.90312 1.20006 0.92602 0.85550 0.84259 1.86585 1.77645 1.56532 1.17065 1.23052 0.94007 0.99668 0.99048 1.22443 0.99820 0.82085 0.98180 1.47720 1.35546 1.06458 1.45985 1.15386 0.79274 0.83950 0.79286 1.90851 1.71327 1.23747 1.59921 1.42526 1.36522 1.08828 1.44604 1.16936 0.88622 0.88281 1.00169 1.21456 1.01927 0.90174 0.98352 1.21013 0.95095 0.98653 1.00131 1.20861 0.95289 0.96588 1.00210 1.20938 1.00739 0.92580 1.06424 1.18574 0.90647 0.85004 1.01728 1.86033 1.28562 1.28376 1.79808 1.23434 0.82996 0.98352 1.00024 1.22051 1.02594 0.94614 0.79561 1.92830 1.97570 1.92572 1.36062 1.22749 0.86768 1.00762 0.90599 0.92360 0.78818 0.89247 0.90647 0.91355 0.91962 0.75456 0.82540 0.85570 0.85914 0.85474 0.90805 0.90218 0.88603 0.89534 0.90679 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 2 C 0.09 2.41 5.44 -17.82 -0.10 2.32 16 3 Si 0.87 20.52 24.27 -169.99 -4.13 16.39 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.21 -4.86 5.12 56.52 0.29 -4.57 16 7 C -0.55 -14.44 8.81 -34.44 -0.30 -14.75 16 8 H 0.08 2.26 7.82 -52.48 -0.41 1.85 16 9 C 0.22 4.71 0.67 -89.94 -0.06 4.65 16 10 O -0.57 -12.06 9.90 -35.23 -0.35 -12.41 16 11 C -0.12 -2.36 5.06 -24.47 -0.12 -2.49 16 12 C 0.10 1.61 6.54 -2.41 -0.02 1.60 16 13 N -0.62 -11.51 3.32 -176.09 -0.59 -12.10 16 14 C 0.72 13.30 8.29 -86.93 -0.72 12.58 16 15 O -0.58 -12.19 13.84 5.29 0.07 -12.12 16 16 N -0.68 -10.44 5.24 -14.11 -0.07 -10.52 16 17 C 0.16 2.29 6.45 -83.48 -0.54 1.75 16 18 C -0.10 -1.43 8.72 -39.42 -0.34 -1.77 16 19 C -0.13 -1.50 10.04 -39.58 -0.40 -1.89 16 20 C -0.11 -1.08 10.04 -39.57 -0.40 -1.48 16 21 C -0.19 -1.87 9.04 -39.46 -0.36 -2.23 16 22 C 0.09 1.08 6.70 -39.08 -0.26 0.81 16 23 O -0.31 -3.51 9.55 -19.69 -0.19 -3.70 16 24 C 0.03 0.19 5.20 37.16 0.19 0.39 16 25 C 0.07 0.40 7.92 37.16 0.29 0.70 16 26 F -0.21 -2.21 17.35 2.25 0.04 -2.17 16 27 C 0.11 2.33 6.21 -3.06 -0.02 2.31 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.36 6.72 9.08 45.56 0.41 7.14 16 30 H 0.09 1.80 8.04 -51.93 -0.42 1.38 16 31 H 0.08 1.50 5.37 -51.93 -0.28 1.22 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.85 7.38 -51.93 -0.38 0.47 16 34 H 0.41 5.55 6.89 -40.82 -0.28 5.27 16 35 H 0.16 2.59 5.79 -52.49 -0.30 2.29 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.89 6.30 -52.48 -0.33 0.56 16 39 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 40 H 0.08 0.36 7.66 -51.93 -0.40 -0.04 16 41 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 44 H 0.06 1.18 8.06 -51.92 -0.42 0.76 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -33.53 358.47 -7.15 -40.68 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.97 Total: 13.27 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -3.15 Total: 2.49 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.11 Total: -47.85 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.46 Total: -28.22 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.13 Total: 16.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.53 -7.15 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413582627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.275 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds