Wall clock time and date at job start Tue Mar 31 2020 20:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48495 * 109.47618 * 274.91085 * 3 2 1 5 5 H 1.48500 * 109.46901 * 34.91089 * 3 2 1 6 6 H 1.48503 * 109.46934 * 154.90549 * 3 2 1 7 7 C 1.37873 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99570 * 355.19272 * 7 2 1 9 9 C 1.50697 * 120.00431 * 175.18978 * 7 2 1 10 10 O 1.42907 * 110.64074 * 62.25758 * 9 7 2 11 11 C 1.55151 * 110.87382 * 299.01032 * 9 7 2 12 12 C 1.55129 * 101.48946 * 205.89808 * 11 9 7 13 13 N 1.47430 * 104.72230 * 37.29171 * 12 11 9 14 14 C 1.34772 * 125.64924 * 155.81665 * 13 12 11 15 15 O 1.21590 * 119.99863 * 179.69475 * 14 13 12 16 16 N 1.34773 * 120.00053 * 359.69962 * 14 13 12 17 17 C 1.40168 * 120.00040 * 185.70788 * 16 14 13 18 18 C 1.38705 * 120.08859 * 24.74496 * 17 16 14 19 19 C 1.38211 * 119.98249 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.16423 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.17636 * 0.02562 * 20 19 18 22 22 C 1.38551 * 120.01349 * 359.97438 * 21 20 19 23 23 O 1.35985 * 120.07992 * 180.02562 * 22 21 20 24 24 C 1.42905 * 116.99885 * 359.97438 * 23 22 21 25 25 C 1.52999 * 109.46948 * 180.02562 * 24 23 22 26 26 F 1.39902 * 109.47110 * 64.99935 * 25 24 23 27 27 C 1.47021 * 108.70173 * 335.55867 * 13 12 11 28 28 H 0.96998 * 120.00974 * 359.97438 * 1 2 3 29 29 H 0.96699 * 113.99917 * 61.68559 * 10 9 7 30 30 H 1.09000 * 111.00249 * 324.13603 * 11 9 7 31 31 H 1.09004 * 111.00735 * 87.98904 * 11 9 7 32 32 H 1.09000 * 110.49628 * 278.45664 * 12 11 9 33 33 H 1.08996 * 110.35023 * 156.05703 * 12 11 9 34 34 H 0.97006 * 120.00048 * 5.70037 * 16 14 13 35 35 H 1.07993 * 120.00703 * 0.04280 * 18 17 16 36 36 H 1.07997 * 119.91337 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.91272 * 179.72456 * 20 19 18 38 38 H 1.08003 * 119.99353 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.47245 * 299.99765 * 24 23 22 40 40 H 1.08996 * 109.46993 * 60.00202 * 24 23 22 41 41 H 1.08992 * 109.47098 * 184.99844 * 25 24 23 42 42 H 1.09001 * 109.47412 * 305.00164 * 25 24 23 43 43 H 1.09000 * 109.88661 * 120.70199 * 27 13 12 44 44 H 1.09008 * 109.88348 * 241.71280 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3928 2.1065 -1.3948 5 1 1.5022 2.6205 0.8013 6 1 3.5946 1.4125 0.5938 7 6 2.0046 -1.1939 -0.0005 8 1 1.4674 -2.1277 0.0774 9 6 3.5076 -1.1961 -0.1100 10 8 4.0950 -0.5258 1.0071 11 6 3.9658 -0.5471 -1.4426 12 6 5.3402 -1.2317 -1.6632 13 7 5.1481 -2.6169 -1.1966 14 6 5.8684 -3.6856 -1.5908 15 8 5.6243 -4.7855 -1.1334 16 7 6.8592 -3.5352 -2.4919 17 6 7.5287 -4.6606 -2.9917 18 6 6.9017 -5.8978 -2.9960 19 6 7.5641 -7.0062 -3.4889 20 6 8.8514 -6.8853 -3.9789 21 6 9.4827 -5.6554 -3.9779 22 6 8.8255 -4.5395 -3.4855 23 8 9.4450 -3.3289 -3.4843 24 6 10.7747 -3.2801 -4.0055 25 6 11.3031 -1.8468 -3.9215 26 9 11.4177 -1.4700 -2.5790 27 6 4.0445 -2.6384 -0.2253 28 1 -0.4851 0.8399 0.0004 29 1 3.9023 -0.9393 1.8597 30 1 3.2736 -0.7838 -2.2507 31 1 4.0815 0.5312 -1.3326 32 1 6.1121 -0.7366 -1.0739 33 1 5.6038 -1.2208 -2.7208 34 1 7.1090 -2.6481 -2.7946 35 1 5.8961 -5.9950 -2.6145 36 1 7.0747 -7.9689 -3.4921 37 1 9.3668 -7.7549 -4.3590 38 1 10.4884 -5.5644 -4.3610 39 1 11.4180 -3.9389 -3.4222 40 1 10.7693 -3.6053 -5.0458 41 1 12.2813 -1.7916 -4.3990 42 1 10.6121 -1.1743 -4.4298 43 1 3.2540 -3.3013 -0.5770 44 1 4.4100 -2.9790 0.7436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413582627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:47 Heat of formation + Delta-G solvation = -139.206544 kcal Electronic energy + Delta-G solvation = -29608.530933 eV Core-core repulsion = 25247.550305 eV Total energy + Delta-G solvation = -4360.980628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.56768 -42.03238 -40.87181 -39.52049 -38.24480 -36.25521 -35.81165 -34.51409 -32.23994 -31.98257 -30.92633 -30.16705 -29.61796 -27.08019 -25.10019 -24.34736 -23.24187 -22.86628 -21.59151 -21.00769 -19.93278 -19.43562 -18.90387 -18.23586 -17.61838 -17.22919 -16.93460 -16.87730 -16.57974 -16.53083 -16.23959 -15.96586 -15.60118 -15.52706 -15.08144 -15.05183 -14.88676 -14.74512 -14.22486 -14.04181 -13.89334 -13.66247 -13.26184 -13.21610 -12.86293 -12.68115 -12.58661 -12.37036 -12.27400 -12.21594 -11.97326 -11.84711 -11.73553 -11.61033 -11.10203 -10.91563 -10.79452 -10.27646 -9.80602 -9.53685 -8.75135 -8.35723 -6.51954 0.31003 0.42538 1.37602 1.40330 1.48672 1.75546 1.94150 2.06876 2.41925 2.79503 2.85622 3.00249 3.52998 3.56488 3.69793 3.87526 3.92461 3.97694 4.06288 4.07988 4.19309 4.21754 4.31444 4.39074 4.45849 4.47761 4.52862 4.55206 4.76837 4.82179 4.89318 4.91667 5.00320 5.03387 5.15057 5.31190 5.41126 5.49327 5.51776 5.61437 5.83245 5.93759 6.07108 6.38039 6.58896 6.76880 7.11611 7.29040 7.32971 8.78362 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003068 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.955302 B = 9123.287961 C =10620.730942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.036 3.964 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.308 1.308 6 H -0.194 1.194 7 C -0.552 4.552 8 H 0.035 0.965 9 C 0.219 3.781 10 O -0.569 6.569 11 C -0.122 4.122 12 C 0.106 3.894 13 N -0.625 5.625 14 C 0.715 3.285 15 O -0.613 6.613 16 N -0.665 5.665 17 C 0.118 3.882 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.097 4.097 21 C -0.182 4.182 22 C 0.091 3.909 23 O -0.332 6.332 24 C 0.018 3.982 25 C 0.058 3.942 26 F -0.238 7.238 27 C 0.123 3.877 28 H 0.268 0.732 29 H 0.376 0.624 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.418 0.582 35 H 0.124 0.876 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.134 0.866 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.882 -6.322 -13.610 30.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.164 4.164 3 Si 0.755 3.245 4 H -0.201 1.201 5 H -0.236 1.236 6 H -0.115 1.115 7 C -0.589 4.589 8 H 0.053 0.947 9 C 0.179 3.821 10 O -0.377 6.377 11 C -0.160 4.160 12 C -0.016 4.016 13 N -0.361 5.361 14 C 0.418 3.582 15 O -0.494 6.494 16 N -0.313 5.313 17 C 0.022 3.978 18 C -0.143 4.143 19 C -0.157 4.157 20 C -0.116 4.116 21 C -0.201 4.201 22 C 0.043 3.957 23 O -0.247 6.247 24 C -0.057 4.057 25 C 0.004 3.996 26 F -0.220 7.220 27 C -0.001 4.001 28 H 0.077 0.923 29 H 0.225 0.775 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.255 0.745 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.152 0.848 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 26.720 -6.430 -13.650 30.686 hybrid contribution -0.939 0.566 0.697 1.299 sum 25.782 -5.864 -12.953 29.442 Atomic orbital electron populations 1.70068 1.08678 1.28557 1.50268 1.25791 0.95127 1.03413 0.92103 0.86256 0.82586 0.77216 0.78477 1.20074 1.23611 1.11538 1.21385 0.90837 0.93522 1.53182 0.94652 1.19795 0.89881 0.86819 0.85639 1.86520 1.77094 1.56562 1.17537 1.22989 0.95711 1.00153 0.97114 1.22509 0.98089 0.80366 1.00626 1.47640 1.35138 1.07500 1.45829 1.15517 0.79794 0.83279 0.79631 1.90832 1.72396 1.25002 1.61189 1.42293 1.35578 1.09760 1.43634 1.17202 0.90187 0.87916 1.02468 1.21320 1.01180 0.91720 1.00051 1.21245 0.96131 0.98329 1.00015 1.21303 0.94232 0.97922 0.98119 1.21397 1.02056 0.91627 1.04989 1.18642 0.89822 0.86259 1.00937 1.86018 1.30570 1.27907 1.80168 1.23806 0.80970 0.99205 1.01714 1.22429 1.04868 0.94223 0.78057 1.92771 1.97771 1.92860 1.38564 1.22408 0.86991 0.99486 0.91222 0.92303 0.77502 0.90195 0.89954 0.89841 0.88510 0.74463 0.85788 0.84058 0.82229 0.81764 0.90203 0.87139 0.84813 0.88849 0.93299 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.96 21.44 0.30 -56.72 16 2 C 0.04 2.00 5.44 84.65 0.46 2.47 16 3 Si 0.93 42.32 24.27 68.60 1.67 43.98 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.19 -8.16 5.12 99.48 0.51 -7.65 16 7 C -0.55 -29.99 8.81 25.60 0.23 -29.76 16 8 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 9 C 0.22 9.57 0.67 -10.35 -0.01 9.57 16 10 O -0.57 -23.20 9.90 -148.98 -1.48 -24.67 16 11 C -0.12 -4.64 5.06 32.06 0.16 -4.48 16 12 C 0.11 3.28 6.54 86.93 0.57 3.85 16 13 N -0.62 -23.13 3.32 -829.29 -2.76 -25.88 16 14 C 0.72 26.94 8.29 179.06 1.49 28.42 16 15 O -0.61 -27.02 13.84 -4.00 -0.06 -27.07 16 16 N -0.67 -20.26 5.24 -316.81 -1.66 -21.92 16 17 C 0.12 3.39 6.45 38.17 0.25 3.64 16 18 C -0.12 -3.61 8.72 22.37 0.20 -3.42 16 19 C -0.14 -3.01 10.04 22.27 0.22 -2.79 16 20 C -0.10 -1.55 10.04 22.28 0.22 -1.33 16 21 C -0.18 -2.90 9.04 22.35 0.20 -2.70 16 22 C 0.09 2.02 6.70 22.60 0.15 2.17 16 23 O -0.33 -6.53 9.55 -93.38 -0.89 -7.42 16 24 C 0.02 0.18 5.20 71.98 0.37 0.55 16 25 C 0.06 0.51 7.92 71.98 0.57 1.08 16 26 F -0.24 -4.55 17.35 44.97 0.78 -3.77 16 27 C 0.12 5.17 6.21 86.73 0.54 5.70 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.38 13.52 9.08 -74.06 -0.67 12.85 16 30 H 0.08 3.18 8.04 -2.39 -0.02 3.16 16 31 H 0.08 3.04 5.37 -2.38 -0.01 3.02 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.10 2.35 7.38 -2.39 -0.02 2.34 16 34 H 0.42 10.76 6.89 -92.70 -0.64 10.13 16 35 H 0.12 4.44 5.79 -2.91 -0.02 4.42 16 36 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.16 1.35 6.30 -2.91 -0.02 1.33 16 39 H 0.08 0.71 7.66 -2.39 -0.02 0.69 16 40 H 0.11 0.42 7.66 -2.39 -0.02 0.41 16 41 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.05 2.28 7.66 -2.39 -0.02 2.26 16 44 H 0.06 2.45 8.06 -2.38 -0.02 2.43 16 Total: -1.00 -77.44 358.47 1.08 -76.36 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.45 Total: 34.14 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 5.62 Total: 12.97 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -4.12 Total: -104.53 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -2.42 Total: -59.17 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.77 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.67 Total: 43.98 kcal Total: -77.44 1.08 -76.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413582627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.842 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds