Wall clock time and date at job start Tue Mar 31 2020 20:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00158 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00032 * 3 2 1 6 6 H 1.48497 * 109.46984 * 150.00468 * 3 2 1 7 7 C 1.37882 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99571 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99723 * 0.27162 * 7 2 1 10 10 O 1.42898 * 110.88700 * 59.02809 * 9 7 2 11 11 C 1.55160 * 110.99930 * 182.90346 * 9 7 2 12 12 C 1.54323 * 102.93902 * 153.57680 * 11 9 7 13 13 N 1.47025 * 107.27517 * 337.81054 * 12 11 9 14 14 C 1.34774 * 125.65301 * 179.00191 * 13 12 11 15 15 O 1.21584 * 120.00169 * 179.97438 * 14 13 12 16 16 N 1.34782 * 119.99870 * 359.96467 * 14 13 12 17 17 C 1.40163 * 119.99985 * 174.36465 * 16 14 13 18 18 C 1.38705 * 120.08869 * 335.23116 * 17 16 14 19 19 C 1.38205 * 119.98575 * 179.74400 * 18 17 16 20 20 C 1.38269 * 120.16163 * 0.53368 * 19 18 17 21 21 C 1.38255 * 120.17380 * 359.74203 * 20 19 18 22 22 C 1.38542 * 120.01250 * 359.97438 * 21 20 19 23 23 O 1.35986 * 120.07934 * 180.02562 * 22 21 20 24 24 C 1.42900 * 116.99971 * 359.97438 * 23 22 21 25 25 C 1.52996 * 109.47137 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47478 * 65.00150 * 25 24 23 27 27 C 1.47467 * 108.71731 * 358.97036 * 13 12 11 28 28 H 0.96999 * 119.99585 * 359.97438 * 1 2 3 29 29 H 0.96696 * 114.00315 * 300.69388 * 10 9 7 30 30 H 1.08994 * 110.72253 * 271.94059 * 11 9 7 31 31 H 1.08997 * 110.72082 * 35.22082 * 11 9 7 32 32 H 1.09001 * 109.88651 * 97.22450 * 12 11 9 33 33 H 1.09002 * 109.88434 * 218.39324 * 12 11 9 34 34 H 0.97005 * 120.00008 * 354.36762 * 16 14 13 35 35 H 1.08007 * 120.00615 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.92009 * 180.27264 * 19 18 17 37 37 H 1.08002 * 119.91368 * 179.76504 * 20 19 18 38 38 H 1.08006 * 119.99145 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.47083 * 300.00428 * 24 23 22 40 40 H 1.09006 * 109.47346 * 60.00023 * 24 23 22 41 41 H 1.09010 * 109.47456 * 184.99966 * 25 24 23 42 42 H 1.09005 * 109.47308 * 304.99879 * 25 24 23 43 43 H 1.08995 * 110.35415 * 265.25260 * 27 13 12 44 44 H 1.09000 * 110.40146 * 142.92081 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0073 10 8 0.4059 -2.5935 -1.1558 11 6 2.2253 -3.7043 0.0667 12 6 1.3640 -4.8054 0.7204 13 7 0.2765 -4.1348 1.4479 14 6 -0.7035 -4.7507 2.1382 15 8 -1.5546 -4.0923 2.7042 16 7 -0.7403 -6.0966 2.2008 17 6 -1.6873 -6.7347 3.0136 18 6 -2.2239 -6.0722 4.1077 19 6 -3.1614 -6.7015 4.9046 20 6 -3.5585 -7.9952 4.6208 21 6 -3.0237 -8.6638 3.5352 22 6 -2.0878 -8.0378 2.7281 23 8 -1.5613 -8.6940 1.6597 24 6 -2.0182 -10.0280 1.4282 25 6 -1.3190 -10.5995 0.1932 26 9 0.0520 -10.7165 0.4457 27 6 0.4358 -2.6764 1.2980 28 1 -0.4849 0.8401 0.0004 29 1 -0.2527 -1.8883 -1.2185 30 1 2.5432 -4.0051 -0.9316 31 1 3.0862 -3.4664 0.6914 32 1 0.9489 -5.4569 -0.0486 33 1 1.9705 -5.3874 1.4144 34 1 -0.1114 -6.6236 1.6834 35 1 -1.9125 -5.0631 4.3341 36 1 -3.5818 -6.1831 5.7537 37 1 -4.2886 -8.4845 5.2484 38 1 -3.3363 -9.6741 3.3160 39 1 -1.7869 -10.6469 2.2952 40 1 -3.0959 -10.0198 1.2649 41 1 -1.7314 -11.5822 -0.0358 42 1 -1.4767 -9.9328 -0.6547 43 1 0.9836 -2.2658 2.1461 44 1 -0.5379 -2.1954 1.2055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413582650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:53 Heat of formation + Delta-G solvation = -128.506834 kcal Electronic energy + Delta-G solvation = -29647.651100 eV Core-core repulsion = 25287.134446 eV Total energy + Delta-G solvation = -4360.516654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -47.90184 -40.72294 -39.50417 -37.85128 -37.01355 -34.46093 -34.24043 -32.19101 -31.40524 -30.57236 -29.78439 -28.73024 -27.72563 -25.13238 -24.27875 -23.01536 -22.05467 -21.83538 -19.68408 -19.43174 -18.68923 -17.74278 -17.14218 -16.96398 -16.90441 -16.09628 -15.89627 -15.45101 -15.17981 -15.09758 -14.89299 -14.76060 -14.37025 -14.29500 -13.87135 -13.60523 -13.09473 -12.95462 -12.81913 -12.70403 -12.14409 -11.83447 -11.72298 -11.62483 -11.52203 -11.50379 -11.21904 -11.11212 -11.04404 -10.83123 -10.60585 -10.47515 -10.34823 -10.17931 -9.54650 -9.39437 -8.69755 -8.56317 -8.39718 -7.93645 -7.53895 -6.28805 -4.38501 1.36408 1.41224 2.79392 3.00096 3.21279 3.28717 3.31026 3.48631 3.95228 4.12460 4.23980 4.34007 4.35960 4.55385 4.68020 4.81191 4.83600 4.98173 5.02995 5.21962 5.38777 5.39074 5.43567 5.55722 5.63736 5.75925 5.86992 6.01498 6.04114 6.16698 6.26386 6.49361 6.53871 6.67311 6.69616 6.84534 6.84846 6.93736 7.19480 7.30224 7.32799 7.54178 7.73869 8.00779 8.38510 8.65238 8.96453 9.30638 9.41164 10.78411 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002931 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.870276 B = 9549.505712 C =10919.817421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.101 3.899 13 N -0.621 5.621 14 C 0.715 3.285 15 O -0.580 6.580 16 N -0.680 5.680 17 C 0.160 3.840 18 C -0.100 4.100 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.187 4.187 22 C 0.085 3.915 23 O -0.313 6.313 24 C 0.028 3.972 25 C 0.066 3.934 26 F -0.210 7.210 27 C 0.112 3.888 28 H 0.271 0.729 29 H 0.384 0.616 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.409 0.591 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -20.283 4.680 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.153 4.153 12 C -0.022 4.022 13 N -0.356 5.356 14 C 0.417 3.583 15 O -0.459 6.459 16 N -0.327 5.327 17 C 0.063 3.937 18 C -0.121 4.121 19 C -0.149 4.149 20 C -0.132 4.132 21 C -0.207 4.207 22 C 0.038 3.962 23 O -0.227 6.227 24 C -0.048 4.048 25 C 0.011 3.989 26 F -0.191 7.191 27 C -0.010 4.010 28 H 0.081 0.919 29 H 0.235 0.765 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.175 0.825 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.950 -20.094 4.830 21.251 hybrid contribution 0.204 0.863 -0.061 0.889 sum -4.745 -19.231 4.770 20.374 Atomic orbital electron populations 1.69656 1.05998 1.27981 1.49533 1.25090 0.95046 0.99795 0.93308 0.86389 0.79764 0.82379 0.78289 1.20401 1.21001 1.19684 1.21471 0.93679 0.90006 1.52475 0.91451 1.19623 0.86197 0.91666 0.81729 1.86083 1.51464 1.55156 1.46540 1.22596 0.97663 0.94810 1.00240 1.22014 0.88938 0.96433 0.94838 1.47987 1.25951 1.09818 1.51885 1.15484 0.81833 0.80710 0.80227 1.90840 1.39863 1.64201 1.50979 1.42609 1.36111 1.05782 1.48154 1.16962 0.94626 0.89434 0.92654 1.21466 0.97140 1.01692 0.91770 1.21000 0.98612 0.94907 1.00356 1.20837 1.00276 0.94952 0.97165 1.20920 1.00649 1.00780 0.98324 1.18577 0.96243 0.91921 0.89438 1.86038 1.64571 1.27261 1.44858 1.23416 0.99627 0.82738 0.98984 1.22059 0.76801 1.02326 0.97664 1.92813 1.33203 1.97541 1.95592 1.23235 1.02665 0.74978 1.00092 0.91914 0.76531 0.90632 0.90315 0.92393 0.92810 0.75578 0.82546 0.85673 0.86017 0.85560 0.90896 0.90249 0.88626 0.89443 0.92150 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 10.69 55.43 0.59 -23.12 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.54 -13.85 8.25 -34.44 -0.28 -14.13 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.29 16 9 C 0.25 5.97 0.88 -89.62 -0.08 5.89 16 10 O -0.58 -14.89 13.17 -35.23 -0.46 -15.35 16 11 C -0.12 -2.27 6.13 -24.89 -0.15 -2.42 16 12 C 0.10 1.79 6.17 -3.06 -0.02 1.77 16 13 N -0.62 -12.96 3.33 -176.20 -0.59 -13.54 16 14 C 0.71 14.83 8.30 -86.92 -0.72 14.11 16 15 O -0.58 -13.67 13.77 5.29 0.07 -13.60 16 16 N -0.68 -11.62 5.25 -14.11 -0.07 -11.70 16 17 C 0.16 2.58 6.45 -83.49 -0.54 2.04 16 18 C -0.10 -1.59 8.72 -39.42 -0.34 -1.93 16 19 C -0.13 -1.65 10.04 -39.58 -0.40 -2.04 16 20 C -0.11 -1.23 10.04 -39.56 -0.40 -1.63 16 21 C -0.19 -2.07 9.04 -39.46 -0.36 -2.42 16 22 C 0.09 1.15 6.70 -39.08 -0.26 0.89 16 23 O -0.31 -3.86 9.54 -19.70 -0.19 -4.05 16 24 C 0.03 0.22 5.20 37.16 0.19 0.42 16 25 C 0.07 0.45 7.92 37.16 0.29 0.75 16 26 F -0.21 -2.24 17.35 2.25 0.04 -2.20 16 27 C 0.11 2.68 5.51 -2.51 -0.01 2.67 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.38 10.13 7.24 45.56 0.33 10.46 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 32 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 6.26 7.33 -40.82 -0.30 5.96 16 35 H 0.16 2.83 5.79 -52.48 -0.30 2.53 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.00 6.30 -52.48 -0.33 0.67 16 39 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 40 H 0.08 0.47 7.66 -51.93 -0.40 0.07 16 41 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.48 8.03 -51.93 -0.42 1.06 16 44 H 0.08 2.30 7.48 -51.93 -0.39 1.91 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -31.02 366.99 -8.39 -39.41 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -5.12 Total: 17.71 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.17 Total: 5.70 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.07 Total: -48.36 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.58 Total: -33.00 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.02 -8.39 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413582650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.096 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds