Wall clock time and date at job start Tue Mar 31 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00158 * 3 2 1 5 5 H 1.48493 * 109.47246 * 30.00032 * 3 2 1 6 6 H 1.48497 * 109.46984 * 150.00468 * 3 2 1 7 7 C 1.37882 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99571 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99723 * 0.27162 * 7 2 1 10 10 O 1.42898 * 110.88700 * 59.02809 * 9 7 2 11 11 C 1.55160 * 110.99930 * 182.90346 * 9 7 2 12 12 C 1.54323 * 102.93902 * 153.57680 * 11 9 7 13 13 N 1.47025 * 107.27517 * 337.81054 * 12 11 9 14 14 C 1.34774 * 125.65301 * 179.00191 * 13 12 11 15 15 O 1.21584 * 120.00169 * 179.97438 * 14 13 12 16 16 N 1.34782 * 119.99870 * 359.96467 * 14 13 12 17 17 C 1.40163 * 119.99985 * 174.36465 * 16 14 13 18 18 C 1.38705 * 120.08869 * 335.23116 * 17 16 14 19 19 C 1.38205 * 119.98575 * 179.74400 * 18 17 16 20 20 C 1.38269 * 120.16163 * 0.53368 * 19 18 17 21 21 C 1.38255 * 120.17380 * 359.74203 * 20 19 18 22 22 C 1.38542 * 120.01250 * 359.97438 * 21 20 19 23 23 O 1.35986 * 120.07934 * 180.02562 * 22 21 20 24 24 C 1.42900 * 116.99971 * 359.97438 * 23 22 21 25 25 C 1.52996 * 109.47137 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47478 * 65.00150 * 25 24 23 27 27 C 1.47467 * 108.71731 * 358.97036 * 13 12 11 28 28 H 0.96999 * 119.99585 * 359.97438 * 1 2 3 29 29 H 0.96696 * 114.00315 * 300.69388 * 10 9 7 30 30 H 1.08994 * 110.72253 * 271.94059 * 11 9 7 31 31 H 1.08997 * 110.72082 * 35.22082 * 11 9 7 32 32 H 1.09001 * 109.88651 * 97.22450 * 12 11 9 33 33 H 1.09002 * 109.88434 * 218.39324 * 12 11 9 34 34 H 0.97005 * 120.00008 * 354.36762 * 16 14 13 35 35 H 1.08007 * 120.00615 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.92009 * 180.27264 * 19 18 17 37 37 H 1.08002 * 119.91368 * 179.76504 * 20 19 18 38 38 H 1.08006 * 119.99145 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.47083 * 300.00428 * 24 23 22 40 40 H 1.09006 * 109.47346 * 60.00023 * 24 23 22 41 41 H 1.09010 * 109.47456 * 184.99966 * 25 24 23 42 42 H 1.09005 * 109.47308 * 304.99879 * 25 24 23 43 43 H 1.08995 * 110.35415 * 265.25260 * 27 13 12 44 44 H 1.09000 * 110.40146 * 142.92081 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0073 10 8 0.4059 -2.5935 -1.1558 11 6 2.2253 -3.7043 0.0667 12 6 1.3640 -4.8054 0.7204 13 7 0.2765 -4.1348 1.4479 14 6 -0.7035 -4.7507 2.1382 15 8 -1.5546 -4.0923 2.7042 16 7 -0.7403 -6.0966 2.2008 17 6 -1.6873 -6.7347 3.0136 18 6 -2.2239 -6.0722 4.1077 19 6 -3.1614 -6.7015 4.9046 20 6 -3.5585 -7.9952 4.6208 21 6 -3.0237 -8.6638 3.5352 22 6 -2.0878 -8.0378 2.7281 23 8 -1.5613 -8.6940 1.6597 24 6 -2.0182 -10.0280 1.4282 25 6 -1.3190 -10.5995 0.1932 26 9 0.0520 -10.7165 0.4457 27 6 0.4358 -2.6764 1.2980 28 1 -0.4849 0.8401 0.0004 29 1 -0.2527 -1.8883 -1.2185 30 1 2.5432 -4.0051 -0.9316 31 1 3.0862 -3.4664 0.6914 32 1 0.9489 -5.4569 -0.0486 33 1 1.9705 -5.3874 1.4144 34 1 -0.1114 -6.6236 1.6834 35 1 -1.9125 -5.0631 4.3341 36 1 -3.5818 -6.1831 5.7537 37 1 -4.2886 -8.4845 5.2484 38 1 -3.3363 -9.6741 3.3160 39 1 -1.7869 -10.6469 2.2952 40 1 -3.0959 -10.0198 1.2649 41 1 -1.7314 -11.5822 -0.0358 42 1 -1.4767 -9.9328 -0.6547 43 1 0.9836 -2.2658 2.1461 44 1 -0.5379 -2.1954 1.2055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413582650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:52 Heat of formation + Delta-G solvation = -150.119523 kcal Electronic energy + Delta-G solvation = -29648.588297 eV Core-core repulsion = 25287.134446 eV Total energy + Delta-G solvation = -4361.453851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.56336 -41.97198 -40.79170 -39.32404 -38.20493 -36.14743 -35.74356 -34.19818 -32.21519 -31.96576 -30.89463 -29.93048 -29.40419 -26.97747 -25.12344 -24.46537 -23.11971 -22.83383 -21.50383 -20.87581 -19.79324 -19.20704 -18.81899 -18.18831 -17.60755 -17.20041 -17.02799 -16.84963 -16.54917 -16.25865 -16.19004 -15.93331 -15.61047 -15.53265 -15.03575 -14.97199 -14.79740 -14.63613 -13.93508 -13.85954 -13.70133 -13.50014 -13.29437 -12.84713 -12.70261 -12.64780 -12.51031 -12.31174 -12.24060 -12.21383 -12.12729 -11.96471 -11.75221 -11.61650 -11.25557 -11.07247 -10.66119 -10.34508 -9.67393 -9.48560 -8.73208 -8.25533 -6.42771 0.32171 0.42654 1.41048 1.44445 1.50001 1.54676 1.99806 2.07703 2.38204 2.85714 2.89944 3.00509 3.55711 3.75704 3.86816 3.91755 4.03605 4.06298 4.07239 4.12056 4.22291 4.28418 4.31383 4.46941 4.52414 4.52867 4.59202 4.72354 4.82670 4.90598 5.02099 5.05452 5.06882 5.26725 5.31515 5.35230 5.43795 5.51258 5.61713 5.75220 5.84106 5.98660 6.08233 6.38981 6.64191 6.87315 7.28259 7.35414 7.39102 8.80055 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002931 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.870276 B = 9549.505712 C =10919.817421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.109 4.109 12 C 0.103 3.897 13 N -0.627 5.627 14 C 0.710 3.290 15 O -0.619 6.619 16 N -0.665 5.665 17 C 0.117 3.883 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.097 4.097 21 C -0.181 4.181 22 C 0.089 3.911 23 O -0.333 6.333 24 C 0.018 3.982 25 C 0.060 3.940 26 F -0.235 7.235 27 C 0.128 3.872 28 H 0.270 0.730 29 H 0.375 0.625 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.416 0.584 35 H 0.122 0.878 36 H 0.142 0.858 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -23.452 4.951 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.192 3.808 10 O -0.397 6.397 11 C -0.146 4.146 12 C -0.019 4.019 13 N -0.363 5.363 14 C 0.413 3.587 15 O -0.500 6.500 16 N -0.313 5.313 17 C 0.022 3.978 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.116 4.116 21 C -0.199 4.199 22 C 0.042 3.958 23 O -0.248 6.248 24 C -0.057 4.057 25 C 0.006 3.994 26 F -0.216 7.216 27 C 0.004 3.996 28 H 0.079 0.921 29 H 0.225 0.775 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.154 0.846 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.130 -23.340 5.098 24.435 hybrid contribution 0.167 1.706 -0.119 1.718 sum -4.963 -21.635 4.978 22.748 Atomic orbital electron populations 1.69780 1.07235 1.28482 1.50113 1.25855 0.95752 1.02931 0.93009 0.85427 0.78695 0.78479 0.78264 1.20012 1.21197 1.18862 1.21803 0.94045 0.91063 1.52461 0.91063 1.19866 0.86684 0.93272 0.80965 1.86074 1.51471 1.54760 1.47390 1.22597 0.97275 0.93296 1.01467 1.22168 0.88157 0.95926 0.95614 1.47917 1.27064 1.08762 1.52517 1.15647 0.81358 0.81868 0.79866 1.90814 1.41282 1.65447 1.52443 1.42322 1.36612 1.04138 1.48203 1.17264 0.96054 0.91092 0.93416 1.21318 0.99052 1.00766 0.93332 1.21243 0.97879 0.96096 1.00437 1.21307 0.99612 0.93765 0.96913 1.21400 0.99034 1.02248 0.97263 1.18649 0.96215 0.90969 0.89999 1.86025 1.65025 1.29425 1.44342 1.23809 1.01223 0.80686 0.99996 1.22387 0.75379 1.04459 0.97210 1.92764 1.35408 1.97714 1.95717 1.22766 1.00132 0.76861 0.99793 0.92083 0.77545 0.89491 0.88990 0.91141 0.89386 0.74667 0.86026 0.84011 0.82038 0.81615 0.89477 0.87732 0.84610 0.89583 0.93626 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 10.69 21.45 0.23 -50.32 16 2 C 0.03 1.33 5.29 84.66 0.45 1.78 16 3 Si 0.97 41.98 29.54 68.60 2.03 44.00 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.56 -29.01 8.25 25.60 0.21 -28.80 16 8 H 0.07 3.58 7.78 -2.91 -0.02 3.55 16 9 C 0.23 11.42 0.88 -10.15 -0.01 11.41 16 10 O -0.59 -30.92 13.17 -148.98 -1.96 -32.88 16 11 C -0.11 -4.18 6.13 31.78 0.19 -3.99 16 12 C 0.10 3.58 6.17 86.73 0.53 4.11 16 13 N -0.63 -26.98 3.33 -829.65 -2.76 -29.74 16 14 C 0.71 30.86 8.30 179.05 1.49 32.34 16 15 O -0.62 -31.26 13.77 -3.98 -0.05 -31.32 16 16 N -0.67 -23.29 5.25 -316.81 -1.66 -24.96 16 17 C 0.12 3.81 6.45 38.17 0.25 4.06 16 18 C -0.12 -4.09 8.72 22.37 0.20 -3.90 16 19 C -0.14 -3.35 10.04 22.27 0.22 -3.13 16 20 C -0.10 -1.77 10.04 22.28 0.22 -1.54 16 21 C -0.18 -3.30 9.04 22.35 0.20 -3.10 16 22 C 0.09 2.25 6.70 22.59 0.15 2.40 16 23 O -0.33 -7.55 9.54 -93.39 -0.89 -8.44 16 24 C 0.02 0.21 5.20 71.98 0.37 0.59 16 25 C 0.06 0.64 7.92 71.98 0.57 1.21 16 26 F -0.23 -4.57 17.35 44.97 0.78 -3.79 16 27 C 0.13 6.43 5.51 86.85 0.48 6.91 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.38 20.77 7.24 -74.06 -0.54 20.23 16 30 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.09 3.27 8.03 -2.39 -0.02 3.25 16 32 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.42 12.72 7.33 -92.70 -0.68 12.04 16 35 H 0.12 4.83 5.79 -2.91 -0.02 4.81 16 36 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.17 1.68 6.30 -2.91 -0.02 1.66 16 39 H 0.09 0.83 7.66 -2.39 -0.02 0.81 16 40 H 0.10 0.75 7.66 -2.38 -0.02 0.74 16 41 H 0.14 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.05 2.37 8.03 -2.39 -0.02 2.35 16 44 H 0.04 2.56 7.48 -2.39 -0.02 2.54 16 Total: -1.00 -72.17 366.99 1.08 -71.09 By element: Atomic # 1 Polarization: 46.14 SS G_CDS: -0.16 Total: 45.98 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 5.53 Total: 20.36 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -4.19 Total: -105.02 kcal Atomic # 8 Polarization: -69.73 SS G_CDS: -2.91 Total: -72.63 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.78 Total: -3.79 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.17 1.08 -71.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413582650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.025 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds