Wall clock time and date at job start Tue Mar 31 2020 20:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86795 * 119.99871 * 2 1 4 4 H 1.48508 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47176 * 299.99611 * 3 2 1 6 6 H 1.48500 * 109.47497 * 59.99928 * 3 2 1 7 7 C 1.38652 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99905 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00137 * 174.60207 * 9 7 2 11 11 C 1.38952 * 120.03254 * 353.92694 * 10 9 7 12 12 C 1.38128 * 120.06994 * 179.71621 * 11 10 9 13 13 C 1.38208 * 120.13593 * 0.55976 * 12 11 10 14 14 C 1.38912 * 120.06713 * 359.71676 * 13 12 11 15 15 N 1.39942 * 120.03745 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00217 * 146.70146 * 15 14 13 17 17 O 1.21588 * 119.99946 * 354.58046 * 16 15 14 18 18 N 1.34780 * 120.00199 * 174.58338 * 16 15 14 19 19 C 1.46495 * 120.00360 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.54093 * 59.99827 * 19 18 16 21 21 F 1.39907 * 109.46961 * 180.02562 * 20 19 18 22 22 C 1.53176 * 109.54444 * 299.82154 * 19 18 16 23 23 C 1.53281 * 109.06321 * 297.02967 * 22 19 18 24 24 O 1.42906 * 109.45787 * 302.44264 * 23 22 19 25 25 C 1.42898 * 114.09643 * 61.15964 * 24 23 22 26 26 C 1.53091 * 109.41879 * 298.84058 * 25 24 23 27 27 C 1.38733 * 120.03801 * 174.19916 * 10 9 7 28 28 H 0.96999 * 120.00117 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.96549 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.93192 * 180.27163 * 12 11 10 31 31 H 1.07998 * 119.96218 * 179.73807 * 13 12 11 32 32 H 0.97006 * 119.99850 * 326.70139 * 15 14 13 33 33 H 0.97007 * 119.99797 * 359.97438 * 18 16 15 34 34 H 1.09003 * 109.47108 * 300.00102 * 20 19 18 35 35 H 1.09001 * 109.47035 * 60.00044 * 20 19 18 36 36 H 1.09001 * 109.51991 * 57.01788 * 22 19 18 37 37 H 1.08995 * 109.52171 * 177.20358 * 22 19 18 38 38 H 1.09000 * 109.45636 * 182.45101 * 23 22 19 39 39 H 1.08994 * 109.46575 * 62.44679 * 23 22 19 40 40 H 1.08999 * 109.48035 * 178.85433 * 25 24 23 41 41 H 1.09000 * 109.49108 * 58.83132 * 25 24 23 42 42 H 1.08999 * 109.51736 * 297.70865 * 26 25 24 43 43 H 1.08996 * 109.57387 * 177.54890 * 26 25 24 44 44 H 1.08004 * 120.06764 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0694 -3.5043 -0.1127 11 6 3.4366 -3.4275 -0.3483 12 6 4.1860 -4.5827 -0.4578 13 6 3.5769 -5.8182 -0.3451 14 6 2.2094 -5.9016 -0.1153 15 7 1.5932 -7.1530 -0.0017 16 6 0.5415 -7.3137 0.8255 17 8 0.1896 -6.3997 1.5461 18 7 -0.1203 -8.4875 0.8541 19 6 -1.2632 -8.6624 1.7537 20 6 -2.3459 -7.6372 1.4108 21 9 -3.4364 -7.8051 2.2711 22 6 -0.8096 -8.4632 3.2031 23 6 0.2170 -9.5443 3.5595 24 8 -0.3627 -10.8352 3.3606 25 6 -0.7630 -11.0938 2.0134 26 6 -1.8284 -10.0771 1.5950 27 6 1.4551 -4.7430 0.0010 28 1 -0.4850 0.8400 -0.0004 29 1 3.9147 -2.4636 -0.4417 30 1 5.2493 -4.5204 -0.6365 31 1 4.1648 -6.7197 -0.4354 32 1 1.9231 -7.9047 -0.5185 33 1 0.1603 -9.2165 0.2789 34 1 -1.9434 -6.6309 1.5271 35 1 -2.6701 -7.7820 0.3802 36 1 -0.3563 -7.4778 3.3108 37 1 -1.6693 -8.5442 3.8682 38 1 0.5118 -9.4351 4.6032 39 1 1.0938 -9.4372 2.9210 40 1 -1.1740 -12.1008 1.9432 41 1 0.1009 -11.0071 1.3543 42 1 -2.7086 -10.1908 2.2278 43 1 -2.1041 -10.2447 0.5539 44 1 0.3917 -4.8053 0.1793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414389847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:34 Heat of formation + Delta-G solvation = -116.514060 kcal Electronic energy + Delta-G solvation = -29850.313349 eV Core-core repulsion = 25490.316740 eV Total energy + Delta-G solvation = -4359.996609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.70599 -41.02705 -39.51632 -38.56636 -36.78275 -35.51214 -34.21746 -32.26443 -31.81893 -31.45287 -29.41053 -28.39079 -27.84120 -25.29909 -24.07482 -23.45604 -22.72087 -21.61041 -20.85318 -19.67342 -18.59158 -18.20442 -17.19875 -16.69137 -16.54952 -16.44492 -15.76918 -15.63140 -15.41311 -15.12049 -15.07761 -14.74804 -14.64848 -14.20340 -13.89859 -13.83421 -13.66022 -13.50475 -12.89354 -12.78067 -12.64387 -12.49093 -11.95322 -11.77797 -11.65797 -11.61144 -11.45974 -11.21194 -11.05693 -10.87619 -10.69143 -10.62747 -10.43519 -10.02167 -9.83826 -9.74190 -9.28624 -9.22052 -8.81854 -7.68586 -7.19650 -6.42478 -4.01389 2.03654 2.33430 2.47575 3.11999 3.15057 3.20001 3.21026 3.58228 3.91490 4.01518 4.16229 4.22810 4.42572 4.58896 4.62877 4.81562 4.97917 5.07164 5.11741 5.14158 5.16690 5.30853 5.33894 5.35961 5.56855 5.60238 5.63919 5.72464 5.75779 5.80655 6.00788 6.09735 6.21162 6.28783 6.36016 6.44836 6.79302 6.90068 6.98959 7.06228 7.15778 7.33918 7.47045 7.79197 7.91394 8.02491 8.54230 9.02748 9.73797 10.75512 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.002823 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.617863 B = 9916.924647 C =11043.993674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.245 4.245 12 C -0.057 4.057 13 C -0.238 4.238 14 C 0.194 3.806 15 N -0.679 5.679 16 C 0.700 3.300 17 O -0.554 6.554 18 N -0.739 5.739 19 C 0.172 3.828 20 C 0.048 3.952 21 F -0.212 7.212 22 C -0.171 4.171 23 C 0.066 3.934 24 O -0.382 6.382 25 C 0.064 3.936 26 C -0.160 4.160 27 C -0.187 4.187 28 H 0.269 0.731 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.401 0.599 33 H 0.397 0.603 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -21.651 0.227 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.265 4.265 12 C -0.076 4.076 13 C -0.259 4.259 14 C 0.101 3.899 15 N -0.326 5.326 16 C 0.401 3.599 17 O -0.429 6.429 18 N -0.397 5.397 19 C 0.084 3.916 20 C -0.008 4.008 21 F -0.193 7.193 22 C -0.209 4.209 23 C -0.010 4.010 24 O -0.300 6.300 25 C -0.014 4.014 26 C -0.198 4.198 27 C -0.209 4.209 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.236 0.764 33 H 0.232 0.768 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.343 -20.738 1.100 20.770 hybrid contribution 0.805 0.289 -0.859 1.213 sum 0.462 -20.449 0.241 20.456 Atomic orbital electron populations 1.70060 1.05960 1.27541 1.45946 1.25303 0.95841 0.98842 0.96590 0.85646 0.79135 0.80396 0.78232 1.19077 1.20175 1.20144 1.21379 0.91815 0.80780 1.52677 0.88982 1.84000 1.34220 1.11405 1.78047 1.19121 0.90125 0.87734 0.91674 1.21188 0.94361 0.99027 1.11945 1.20492 0.98320 0.91627 0.97182 1.20214 0.92022 0.97521 1.16152 1.16909 0.90682 0.82633 0.99722 1.42502 1.32732 1.11750 1.45647 1.15973 0.80109 0.82901 0.80901 1.90986 1.67989 1.40307 1.43568 1.45178 1.33648 1.14933 1.45892 1.20627 0.85417 0.95185 0.90358 1.22484 0.83409 1.02514 0.92372 1.92740 1.56479 1.97075 1.72989 1.22701 1.01296 1.02216 0.94704 1.22571 0.94602 0.81928 1.01909 1.87943 1.80700 1.34041 1.27344 1.22519 0.95993 0.98697 0.84144 1.22516 1.00602 0.93128 1.03559 1.20004 1.00558 0.88750 1.11579 0.92073 0.85468 0.87054 0.87486 0.76434 0.76848 0.87700 0.90813 0.87710 0.89658 0.88630 0.93140 0.88494 0.93329 0.88506 0.89901 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.39 -11.04 9.44 30.89 0.29 -10.74 16 8 H 0.09 2.40 5.30 -52.49 -0.28 2.12 16 9 O -0.17 -5.08 9.75 0.06 0.00 -5.08 16 10 C 0.17 4.16 6.64 -39.13 -0.26 3.90 16 11 C -0.25 -5.32 9.13 -39.36 -0.36 -5.68 16 12 C -0.06 -1.02 10.03 -39.63 -0.40 -1.42 16 13 C -0.24 -3.92 9.96 -39.34 -0.39 -4.31 16 14 C 0.19 3.45 6.28 -83.72 -0.53 2.93 16 15 N -0.68 -8.98 5.35 -14.24 -0.08 -9.05 16 16 C 0.70 9.75 7.72 -86.92 -0.67 9.08 16 17 O -0.55 -10.24 10.24 5.29 0.05 -10.19 16 18 N -0.74 -7.03 4.23 -52.25 -0.22 -7.25 16 19 C 0.17 1.74 0.52 -131.64 -0.07 1.67 16 20 C 0.05 0.59 6.31 37.16 0.23 0.82 16 21 F -0.21 -2.80 16.22 2.25 0.04 -2.77 16 22 C -0.17 -1.97 4.69 -26.49 -0.12 -2.10 16 23 C 0.07 0.68 6.68 37.30 0.25 0.93 16 24 O -0.38 -3.89 10.77 -35.23 -0.38 -4.27 16 25 C 0.06 0.45 6.67 37.20 0.25 0.70 16 26 C -0.16 -1.19 4.88 -26.59 -0.13 -1.32 16 27 C -0.19 -4.17 8.60 -39.21 -0.34 -4.50 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.13 2.75 5.71 -52.48 -0.30 2.45 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.40 3.60 8.83 -40.82 -0.36 3.24 16 33 H 0.40 2.47 7.55 -40.82 -0.31 2.16 16 34 H 0.10 1.60 6.17 -51.93 -0.32 1.28 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.51 6.12 -51.93 -0.32 1.19 16 37 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.52 7.75 -51.93 -0.40 0.12 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.28 7.10 -51.93 -0.37 -0.09 16 42 H 0.10 0.80 7.73 -51.93 -0.40 0.40 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.13 3.07 6.42 -52.48 -0.34 2.74 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -34.10 357.51 -7.26 -41.36 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.47 Total: 10.10 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.34 Total: -9.06 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.46 Total: -41.16 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.32 Total: -19.54 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.10 -7.26 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414389847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.153 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds