Wall clock time and date at job start Tue Mar 31 2020 20:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86795 * 119.99871 * 2 1 4 4 H 1.48508 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47176 * 299.99611 * 3 2 1 6 6 H 1.48500 * 109.47497 * 59.99928 * 3 2 1 7 7 C 1.38652 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99905 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00137 * 174.60207 * 9 7 2 11 11 C 1.38952 * 120.03254 * 353.92694 * 10 9 7 12 12 C 1.38128 * 120.06994 * 179.71621 * 11 10 9 13 13 C 1.38208 * 120.13593 * 0.55976 * 12 11 10 14 14 C 1.38912 * 120.06713 * 359.71676 * 13 12 11 15 15 N 1.39942 * 120.03745 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00217 * 146.70146 * 15 14 13 17 17 O 1.21588 * 119.99946 * 354.58046 * 16 15 14 18 18 N 1.34780 * 120.00199 * 174.58338 * 16 15 14 19 19 C 1.46495 * 120.00360 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.54093 * 59.99827 * 19 18 16 21 21 F 1.39907 * 109.46961 * 180.02562 * 20 19 18 22 22 C 1.53176 * 109.54444 * 299.82154 * 19 18 16 23 23 C 1.53281 * 109.06321 * 297.02967 * 22 19 18 24 24 O 1.42906 * 109.45787 * 302.44264 * 23 22 19 25 25 C 1.42898 * 114.09643 * 61.15964 * 24 23 22 26 26 C 1.53091 * 109.41879 * 298.84058 * 25 24 23 27 27 C 1.38733 * 120.03801 * 174.19916 * 10 9 7 28 28 H 0.96999 * 120.00117 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.96549 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.93192 * 180.27163 * 12 11 10 31 31 H 1.07998 * 119.96218 * 179.73807 * 13 12 11 32 32 H 0.97006 * 119.99850 * 326.70139 * 15 14 13 33 33 H 0.97007 * 119.99797 * 359.97438 * 18 16 15 34 34 H 1.09003 * 109.47108 * 300.00102 * 20 19 18 35 35 H 1.09001 * 109.47035 * 60.00044 * 20 19 18 36 36 H 1.09001 * 109.51991 * 57.01788 * 22 19 18 37 37 H 1.08995 * 109.52171 * 177.20358 * 22 19 18 38 38 H 1.09000 * 109.45636 * 182.45101 * 23 22 19 39 39 H 1.08994 * 109.46575 * 62.44679 * 23 22 19 40 40 H 1.08999 * 109.48035 * 178.85433 * 25 24 23 41 41 H 1.09000 * 109.49108 * 58.83132 * 25 24 23 42 42 H 1.08999 * 109.51736 * 297.70865 * 26 25 24 43 43 H 1.08996 * 109.57387 * 177.54890 * 26 25 24 44 44 H 1.08004 * 120.06764 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0694 -3.5043 -0.1127 11 6 3.4366 -3.4275 -0.3483 12 6 4.1860 -4.5827 -0.4578 13 6 3.5769 -5.8182 -0.3451 14 6 2.2094 -5.9016 -0.1153 15 7 1.5932 -7.1530 -0.0017 16 6 0.5415 -7.3137 0.8255 17 8 0.1896 -6.3997 1.5461 18 7 -0.1203 -8.4875 0.8541 19 6 -1.2632 -8.6624 1.7537 20 6 -2.3459 -7.6372 1.4108 21 9 -3.4364 -7.8051 2.2711 22 6 -0.8096 -8.4632 3.2031 23 6 0.2170 -9.5443 3.5595 24 8 -0.3627 -10.8352 3.3606 25 6 -0.7630 -11.0938 2.0134 26 6 -1.8284 -10.0771 1.5950 27 6 1.4551 -4.7430 0.0010 28 1 -0.4850 0.8400 -0.0004 29 1 3.9147 -2.4636 -0.4417 30 1 5.2493 -4.5204 -0.6365 31 1 4.1648 -6.7197 -0.4354 32 1 1.9231 -7.9047 -0.5185 33 1 0.1603 -9.2165 0.2789 34 1 -1.9434 -6.6309 1.5271 35 1 -2.6701 -7.7820 0.3802 36 1 -0.3563 -7.4778 3.3108 37 1 -1.6693 -8.5442 3.8682 38 1 0.5118 -9.4351 4.6032 39 1 1.0938 -9.4372 2.9210 40 1 -1.1740 -12.1008 1.9432 41 1 0.1009 -11.0071 1.3543 42 1 -2.7086 -10.1908 2.2278 43 1 -2.1041 -10.2447 0.5539 44 1 0.3917 -4.8053 0.1793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414389847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:33 Heat of formation + Delta-G solvation = -142.042309 kcal Electronic energy + Delta-G solvation = -29851.420336 eV Core-core repulsion = 25490.316740 eV Total energy + Delta-G solvation = -4361.103596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.77394 -42.11210 -40.82167 -39.93962 -38.30596 -36.55336 -35.59879 -34.26200 -32.84590 -32.20228 -31.04545 -29.77838 -28.85954 -27.31855 -24.83321 -24.52748 -23.87613 -23.15720 -22.21592 -20.66544 -19.93710 -19.69549 -18.93683 -17.72444 -17.47960 -17.28340 -16.92078 -16.82437 -16.63985 -16.61011 -16.10653 -16.08989 -15.85427 -15.77901 -15.43723 -15.31122 -14.75715 -14.56715 -14.31037 -14.22271 -13.64593 -13.57323 -13.40199 -13.21658 -12.91867 -12.89096 -12.71733 -12.43624 -12.34888 -12.30754 -12.09244 -11.82783 -11.49810 -11.35869 -11.20548 -10.90735 -10.77171 -10.68478 -10.19064 -9.28067 -8.83142 -8.46447 -6.15377 0.48316 0.73402 1.34042 1.39113 1.43990 1.53902 1.98669 2.18071 2.85136 2.88736 2.98416 3.19635 3.28469 3.38881 3.58391 3.61586 3.91268 4.00185 4.15893 4.16270 4.26460 4.32058 4.33990 4.39786 4.44680 4.59341 4.68847 4.72681 4.75693 4.75783 4.78074 4.95515 5.02866 5.05079 5.06731 5.12551 5.37113 5.39460 5.48411 5.66278 5.77164 5.93475 6.04402 6.20694 6.23778 6.94201 6.97858 7.44535 7.81152 8.77626 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.002823 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.617863 B = 9916.924647 C =11043.993674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 1.022 2.978 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.410 4.410 8 H 0.105 0.895 9 O -0.236 6.236 10 C 0.127 3.873 11 C -0.258 4.258 12 C -0.048 4.048 13 C -0.205 4.205 14 C 0.207 3.793 15 N -0.663 5.663 16 C 0.697 3.303 17 O -0.602 6.602 18 N -0.711 5.711 19 C 0.174 3.826 20 C 0.046 3.954 21 F -0.219 7.219 22 C -0.170 4.170 23 C 0.075 3.925 24 O -0.396 6.396 25 C 0.057 3.943 26 C -0.151 4.151 27 C -0.211 4.211 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.428 0.572 33 H 0.419 0.581 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -25.397 -1.077 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.841 3.159 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.486 4.486 8 H 0.122 0.878 9 O -0.143 6.143 10 C 0.076 3.924 11 C -0.277 4.277 12 C -0.067 4.067 13 C -0.226 4.226 14 C 0.111 3.889 15 N -0.312 5.312 16 C 0.398 3.602 17 O -0.480 6.480 18 N -0.370 5.370 19 C 0.087 3.913 20 C -0.010 4.010 21 F -0.200 7.200 22 C -0.209 4.209 23 C -0.002 4.002 24 O -0.315 6.315 25 C -0.019 4.019 26 C -0.189 4.189 27 C -0.233 4.233 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.176 0.824 31 H 0.181 0.819 32 H 0.267 0.733 33 H 0.258 0.742 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.139 0.861 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.760 -24.629 -0.243 24.784 hybrid contribution -0.104 1.059 -0.452 1.156 sum 2.657 -23.570 -0.695 23.729 Atomic orbital electron populations 1.70224 1.08214 1.28658 1.49165 1.26674 0.96860 1.02947 0.95935 0.84490 0.78378 0.74579 0.78476 1.17038 1.19213 1.19623 1.21901 0.92577 0.81309 1.52854 0.87801 1.83958 1.36167 1.12758 1.81407 1.19676 0.91776 0.87349 0.93578 1.21317 0.93222 1.00640 1.12562 1.21017 1.00287 0.90445 0.94919 1.20839 0.91157 0.99184 1.11408 1.16995 0.91352 0.82887 0.97632 1.42250 1.32365 1.10934 1.45694 1.16188 0.80159 0.83387 0.80468 1.91005 1.69078 1.42396 1.45489 1.44860 1.32534 1.14073 1.45543 1.20620 0.84731 0.96515 0.89454 1.22490 0.83873 1.01305 0.93320 1.92721 1.56876 1.97012 1.73397 1.22619 1.01325 1.01099 0.95837 1.22450 0.93958 0.81660 1.02154 1.87936 1.80755 1.33298 1.29462 1.22815 0.96558 0.99528 0.83011 1.22509 1.00363 0.90646 1.05336 1.20041 0.99780 0.90046 1.13424 0.91950 0.86185 0.82430 0.81871 0.73263 0.74153 0.91701 0.88761 0.91172 0.90490 0.88577 0.92743 0.86144 0.91281 0.89198 0.86976 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.08 13.67 21.61 0.30 -58.78 16 2 C -0.03 -1.61 5.49 84.83 0.47 -1.14 16 3 Si 1.02 44.06 29.55 68.60 2.03 46.08 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.41 -24.72 9.44 67.92 0.64 -24.08 16 8 H 0.10 5.68 5.30 -2.91 -0.02 5.67 16 9 O -0.24 -15.03 9.75 -22.71 -0.22 -15.25 16 10 C 0.13 6.65 6.64 22.56 0.15 6.80 16 11 C -0.26 -11.19 9.13 22.41 0.20 -10.98 16 12 C -0.05 -1.53 10.03 22.24 0.22 -1.31 16 13 C -0.21 -5.74 9.96 22.42 0.22 -5.51 16 14 C 0.21 6.96 6.28 38.13 0.24 7.20 16 15 N -0.66 -15.66 5.35 -317.24 -1.70 -17.36 16 16 C 0.70 18.85 7.72 179.06 1.38 20.23 16 17 O -0.60 -23.50 10.24 -3.99 -0.04 -23.54 16 18 N -0.71 -11.98 4.23 -437.47 -1.85 -13.83 16 19 C 0.17 3.37 0.52 3.72 0.00 3.37 16 20 C 0.05 1.16 6.31 71.98 0.45 1.61 16 21 F -0.22 -5.99 16.22 44.97 0.73 -5.26 16 22 C -0.17 -4.01 4.69 30.75 0.14 -3.87 16 23 C 0.07 1.43 6.68 72.08 0.48 1.91 16 24 O -0.40 -7.04 10.77 -148.98 -1.60 -8.65 16 25 C 0.06 0.58 6.67 72.01 0.48 1.06 16 26 C -0.15 -1.79 4.88 30.68 0.15 -1.64 16 27 C -0.21 -9.83 8.60 22.51 0.19 -9.63 16 28 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 29 H 0.12 5.29 5.71 -2.91 -0.02 5.27 16 30 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.43 5.51 8.83 -92.70 -0.82 4.69 16 33 H 0.42 3.39 7.55 -92.70 -0.70 2.69 16 34 H 0.06 2.18 6.17 -2.39 -0.01 2.17 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.18 6.12 -2.39 -0.01 2.16 16 37 H 0.08 1.90 7.72 -2.39 -0.02 1.88 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.44 7.10 -2.39 -0.02 0.42 16 42 H 0.09 1.28 7.73 -2.39 -0.02 1.27 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.10 5.15 6.42 -2.91 -0.02 5.13 16 Total: -1.00 -86.05 357.51 2.63 -83.42 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.45 Total: 29.15 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 5.43 Total: -15.98 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -3.25 Total: -89.97 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -1.87 Total: -47.44 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.73 Total: -5.26 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -86.05 2.63 -83.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414389847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.620 kcal (2) G-P(sol) polarization free energy of solvation -86.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds