Wall clock time and date at job start Tue Mar 31 2020 20:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86792 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47158 * 269.99633 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99933 * 3 2 1 6 6 H 1.48501 * 109.47268 * 149.99824 * 3 2 1 7 7 C 1.38634 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99841 * 0.27463 * 7 2 1 9 9 O 1.34806 * 120.00040 * 180.02562 * 7 2 1 10 10 C 1.35772 * 117.00084 * 174.97193 * 9 7 2 11 11 C 1.38741 * 120.08930 * 5.18358 * 10 9 7 12 12 C 1.38343 * 119.97797 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.92568 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15308 * 359.97438 * 12 11 10 15 15 C 1.38205 * 120.17225 * 0.02679 * 14 12 11 16 16 C 1.38693 * 120.02244 * 359.71391 * 15 14 12 17 17 N 1.40125 * 120.07747 * 180.30242 * 16 15 14 18 18 C 1.34780 * 120.00151 * 335.23088 * 17 16 15 19 19 O 1.21593 * 119.99928 * 354.33294 * 18 17 16 20 20 N 1.34770 * 120.00127 * 174.33121 * 18 17 16 21 21 C 1.46509 * 120.00174 * 180.02562 * 20 18 17 22 22 H 1.09002 * 110.01175 * 34.29400 * 21 20 18 23 23 C 1.53872 * 110.03057 * 272.90922 * 21 20 18 24 24 C 1.54263 * 106.59606 * 240.71380 * 23 21 20 25 25 C 1.54880 * 104.19954 * 23.60971 * 24 23 21 26 26 C 1.54260 * 110.03552 * 155.68794 * 21 20 18 27 27 H 1.08993 * 110.49085 * 214.35389 * 26 21 20 28 28 C 1.53001 * 110.48525 * 337.00151 * 26 21 20 29 29 O 1.42909 * 109.46935 * 184.99969 * 28 26 21 30 30 H 0.97000 * 119.99644 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.01024 * 359.97438 * 11 10 9 32 32 H 1.07996 * 119.91196 * 179.97438 * 14 12 11 33 33 H 1.07993 * 119.98502 * 179.97438 * 15 14 12 34 34 H 0.97002 * 120.00471 * 155.22938 * 17 16 15 35 35 H 0.96999 * 120.00346 * 359.97438 * 20 18 17 36 36 H 1.09002 * 110.03512 * 359.97438 * 23 21 20 37 37 H 1.09003 * 110.02947 * 121.37514 * 23 21 20 38 38 H 1.08996 * 110.48539 * 142.29642 * 24 23 21 39 39 H 1.09001 * 110.48462 * 264.79558 * 24 23 21 40 40 H 1.09004 * 110.75922 * 80.37111 * 25 24 23 41 41 H 1.08993 * 110.75809 * 203.56020 * 25 24 23 42 42 H 1.08997 * 109.47150 * 304.98985 * 28 26 21 43 43 H 1.08994 * 109.47327 * 64.99774 * 28 26 21 44 44 H 0.96697 * 113.99902 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1360 -0.0035 9 8 3.3570 -1.2007 0.0011 10 6 3.9734 -2.4057 0.1076 11 6 3.2239 -3.5733 0.1014 12 6 3.8543 -4.7999 0.2106 13 9 3.1235 -5.9362 0.2040 14 6 5.2333 -4.8658 0.3258 15 6 5.9860 -3.7068 0.3326 16 6 5.3620 -2.4734 0.2181 17 7 6.1245 -1.2978 0.2186 18 6 7.3370 -1.2813 0.8069 19 8 7.7258 -2.2530 1.4258 20 7 8.1186 -0.1877 0.7092 21 6 9.4368 -0.1699 1.3482 22 1 9.8819 -1.1643 1.3130 23 6 9.3085 0.2987 2.8082 24 6 10.1529 1.5836 2.9344 25 6 10.2246 2.1346 1.4886 26 6 10.3551 0.8456 0.6373 27 1 11.3860 0.4919 0.6357 28 6 9.8711 1.0958 -0.7924 29 8 10.7996 1.9470 -1.4675 30 1 -0.4849 0.8401 -0.0004 31 1 2.1486 -3.5245 0.0122 32 1 5.7213 -5.8255 0.4112 33 1 7.0607 -3.7617 0.4229 34 1 5.7798 -0.4959 -0.2045 35 1 7.8086 0.5874 0.2152 36 1 8.2656 0.5134 3.0412 37 1 9.6914 -0.4682 3.4815 38 1 9.6609 2.3004 3.5918 39 1 11.1506 1.3495 3.3056 40 1 9.3122 2.6744 1.2351 41 1 11.0980 2.7743 1.3619 42 1 9.7971 0.1463 -1.3224 43 1 8.8922 1.5745 -0.7661 44 1 10.5560 2.1481 -2.3814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414413980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:51 Heat of formation + Delta-G solvation = -121.887508 kcal Electronic energy + Delta-G solvation = -29548.212614 eV Core-core repulsion = 25187.982995 eV Total energy + Delta-G solvation = -4360.229619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.27479 -40.71947 -39.50687 -38.44465 -36.67567 -36.33018 -34.24611 -33.56048 -32.52221 -30.40452 -29.60176 -28.85091 -27.37409 -25.44894 -24.70671 -22.82364 -21.77271 -20.97903 -20.80366 -19.74091 -18.74423 -18.31591 -17.95062 -17.37044 -16.86229 -16.05324 -15.75008 -15.45360 -15.37859 -15.04890 -15.01381 -14.86264 -14.50949 -14.18843 -14.06675 -13.87261 -13.64047 -13.49162 -13.25764 -12.87208 -12.48428 -12.37900 -12.09213 -11.89464 -11.54860 -11.50488 -11.34716 -11.21230 -11.02266 -11.01695 -10.83917 -10.80503 -10.50211 -10.23942 -10.00921 -9.80809 -9.58349 -9.14354 -9.02749 -7.97530 -7.19787 -6.56174 -4.23406 1.75307 2.00837 2.68323 3.07058 3.10268 3.19245 3.26596 3.73304 4.05884 4.23384 4.25509 4.27692 4.33007 4.52223 4.67748 4.92638 4.93193 4.99095 5.03285 5.10390 5.23311 5.28710 5.35432 5.42466 5.47489 5.52000 5.68328 5.73543 5.79219 5.88667 5.92377 5.97446 6.04838 6.12648 6.37553 6.51025 6.59805 6.80564 6.87221 6.96584 7.09165 7.26997 7.44774 7.63663 7.85741 8.05067 8.65120 8.76843 9.31722 10.51170 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.003757 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.334073 B = 7451.564963 C = 9413.204684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.212 6.212 10 C 0.160 3.840 11 C -0.243 4.243 12 C 0.124 3.876 13 F -0.149 7.149 14 C -0.217 4.217 15 C -0.063 4.063 16 C 0.084 3.916 17 N -0.667 5.667 18 C 0.703 3.297 19 O -0.577 6.577 20 N -0.743 5.743 21 C 0.169 3.831 22 H 0.096 0.904 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.115 4.115 26 C -0.099 4.099 27 H 0.096 0.904 28 C 0.083 3.917 29 O -0.573 6.573 30 H 0.281 0.719 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.408 0.592 35 H 0.395 0.605 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.186 4.029 -0.576 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.126 0.874 9 O -0.117 6.117 10 C 0.106 3.894 11 C -0.264 4.264 12 C 0.104 3.896 13 F -0.128 7.128 14 C -0.237 4.237 15 C -0.084 4.084 16 C -0.011 4.011 17 N -0.313 5.313 18 C 0.404 3.596 19 O -0.455 6.455 20 N -0.401 5.401 21 C 0.063 3.937 22 H 0.114 0.886 23 C -0.175 4.175 24 C -0.163 4.163 25 C -0.152 4.152 26 C -0.118 4.118 27 H 0.114 0.886 28 C 0.005 3.995 29 O -0.378 6.378 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.243 0.757 35 H 0.230 0.770 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 19.713 3.476 0.546 20.024 hybrid contribution -0.904 1.257 -0.921 1.802 sum 18.808 4.733 -0.375 19.398 Atomic orbital electron populations 1.69647 1.05551 1.28673 1.47066 1.24463 0.95036 0.98757 0.95605 0.86198 0.80322 0.81598 0.78817 1.19783 1.20630 1.18508 1.20751 0.76369 0.96857 1.52562 0.87369 1.83481 1.23115 1.24736 1.80362 1.18397 0.89188 0.85910 0.95906 1.20954 1.02068 0.90038 1.13293 1.17469 0.89094 0.81325 1.01735 1.91425 1.77888 1.49425 1.94072 1.20567 0.91539 0.99045 1.12543 1.20806 1.00870 0.88868 0.97807 1.16698 0.86617 0.85794 1.11984 1.42260 1.16745 1.13595 1.58721 1.15878 0.80631 0.83466 0.79593 1.90863 1.73876 1.34486 1.46277 1.45392 1.18403 1.17059 1.59211 1.21418 0.81116 0.99786 0.91344 0.88629 1.22639 1.01291 0.97495 0.96110 1.22376 1.00147 0.96949 0.96870 1.22549 1.02193 0.96291 0.94192 1.22289 1.00374 0.96140 0.93014 0.88620 1.22144 0.91317 0.93352 0.92656 1.86456 1.50812 1.70424 1.30142 0.90831 0.83349 0.85758 0.83183 0.75707 0.76951 0.90851 0.90837 0.91474 0.91434 0.91461 0.90985 0.93047 0.93666 0.77288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.09 13.96 55.48 0.77 -23.31 16 2 C 0.07 1.73 5.49 -17.51 -0.10 1.63 16 3 Si 0.91 19.83 28.62 -169.99 -4.86 14.96 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.31 9.94 30.88 0.31 -10.00 16 8 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 9 O -0.21 -5.05 8.00 0.05 0.00 -5.04 16 10 C 0.16 3.49 6.66 -38.94 -0.26 3.23 16 11 C -0.24 -5.21 9.14 -39.36 -0.36 -5.57 16 12 C 0.12 2.42 7.29 -39.43 -0.29 2.14 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.82 16 14 C -0.22 -3.87 10.02 -39.48 -0.40 -4.26 16 15 C -0.06 -1.14 8.72 -39.43 -0.34 -1.49 16 16 C 0.08 1.62 6.45 -83.44 -0.54 1.08 16 17 N -0.67 -11.00 5.29 -14.07 -0.07 -11.07 16 18 C 0.70 10.80 8.36 -86.92 -0.73 10.07 16 19 O -0.58 -10.43 13.18 5.28 0.07 -10.37 16 20 N -0.74 -8.35 4.36 -57.58 -0.25 -8.60 16 21 C 0.17 1.69 3.10 -66.81 -0.21 1.49 16 22 H 0.10 1.07 7.59 -51.93 -0.39 0.68 16 23 C -0.14 -1.36 6.59 -25.62 -0.17 -1.53 16 24 C -0.13 -1.01 6.83 -25.08 -0.17 -1.18 16 25 C -0.11 -0.92 6.26 -24.67 -0.15 -1.07 16 26 C -0.10 -0.82 3.09 -88.89 -0.27 -1.10 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 C 0.08 0.66 5.51 37.16 0.20 0.86 16 29 O -0.57 -4.65 13.58 -35.23 -0.48 -5.13 16 30 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.15 3.34 5.63 -52.48 -0.30 3.05 16 32 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 33 H 0.15 2.65 5.78 -52.49 -0.30 2.35 16 34 H 0.41 6.17 8.37 -40.82 -0.34 5.83 16 35 H 0.39 3.67 6.55 -40.82 -0.27 3.41 16 36 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.55 7.97 -51.93 -0.41 0.14 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.32 6.40 -51.93 -0.33 -0.01 16 44 H 0.38 1.58 9.12 45.56 0.42 1.99 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -30.42 365.02 -7.48 -37.90 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -4.72 Total: 13.68 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -3.47 Total: -5.70 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.45 Total: -42.99 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.41 Total: -20.54 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.86 Total: 14.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.42 -7.48 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414413980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.987 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds