Wall clock time and date at job start Tue Mar 31 2020 20:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86792 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47158 * 269.99633 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99933 * 3 2 1 6 6 H 1.48501 * 109.47268 * 149.99824 * 3 2 1 7 7 C 1.38634 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99841 * 0.27463 * 7 2 1 9 9 O 1.34806 * 120.00040 * 180.02562 * 7 2 1 10 10 C 1.35772 * 117.00084 * 174.97193 * 9 7 2 11 11 C 1.38741 * 120.08930 * 5.18358 * 10 9 7 12 12 C 1.38343 * 119.97797 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.92568 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15308 * 359.97438 * 12 11 10 15 15 C 1.38205 * 120.17225 * 0.02679 * 14 12 11 16 16 C 1.38693 * 120.02244 * 359.71391 * 15 14 12 17 17 N 1.40125 * 120.07747 * 180.30242 * 16 15 14 18 18 C 1.34780 * 120.00151 * 335.23088 * 17 16 15 19 19 O 1.21593 * 119.99928 * 354.33294 * 18 17 16 20 20 N 1.34770 * 120.00127 * 174.33121 * 18 17 16 21 21 C 1.46509 * 120.00174 * 180.02562 * 20 18 17 22 22 H 1.09002 * 110.01175 * 34.29400 * 21 20 18 23 23 C 1.53872 * 110.03057 * 272.90922 * 21 20 18 24 24 C 1.54263 * 106.59606 * 240.71380 * 23 21 20 25 25 C 1.54880 * 104.19954 * 23.60971 * 24 23 21 26 26 C 1.54260 * 110.03552 * 155.68794 * 21 20 18 27 27 H 1.08993 * 110.49085 * 214.35389 * 26 21 20 28 28 C 1.53001 * 110.48525 * 337.00151 * 26 21 20 29 29 O 1.42909 * 109.46935 * 184.99969 * 28 26 21 30 30 H 0.97000 * 119.99644 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.01024 * 359.97438 * 11 10 9 32 32 H 1.07996 * 119.91196 * 179.97438 * 14 12 11 33 33 H 1.07993 * 119.98502 * 179.97438 * 15 14 12 34 34 H 0.97002 * 120.00471 * 155.22938 * 17 16 15 35 35 H 0.96999 * 120.00346 * 359.97438 * 20 18 17 36 36 H 1.09002 * 110.03512 * 359.97438 * 23 21 20 37 37 H 1.09003 * 110.02947 * 121.37514 * 23 21 20 38 38 H 1.08996 * 110.48539 * 142.29642 * 24 23 21 39 39 H 1.09001 * 110.48462 * 264.79558 * 24 23 21 40 40 H 1.09004 * 110.75922 * 80.37111 * 25 24 23 41 41 H 1.08993 * 110.75809 * 203.56020 * 25 24 23 42 42 H 1.08997 * 109.47150 * 304.98985 * 28 26 21 43 43 H 1.08994 * 109.47327 * 64.99774 * 28 26 21 44 44 H 0.96697 * 113.99902 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1360 -0.0035 9 8 3.3570 -1.2007 0.0011 10 6 3.9734 -2.4057 0.1076 11 6 3.2239 -3.5733 0.1014 12 6 3.8543 -4.7999 0.2106 13 9 3.1235 -5.9362 0.2040 14 6 5.2333 -4.8658 0.3258 15 6 5.9860 -3.7068 0.3326 16 6 5.3620 -2.4734 0.2181 17 7 6.1245 -1.2978 0.2186 18 6 7.3370 -1.2813 0.8069 19 8 7.7258 -2.2530 1.4258 20 7 8.1186 -0.1877 0.7092 21 6 9.4368 -0.1699 1.3482 22 1 9.8819 -1.1643 1.3130 23 6 9.3085 0.2987 2.8082 24 6 10.1529 1.5836 2.9344 25 6 10.2246 2.1346 1.4886 26 6 10.3551 0.8456 0.6373 27 1 11.3860 0.4919 0.6357 28 6 9.8711 1.0958 -0.7924 29 8 10.7996 1.9470 -1.4675 30 1 -0.4849 0.8401 -0.0004 31 1 2.1486 -3.5245 0.0122 32 1 5.7213 -5.8255 0.4112 33 1 7.0607 -3.7617 0.4229 34 1 5.7798 -0.4959 -0.2045 35 1 7.8086 0.5874 0.2152 36 1 8.2656 0.5134 3.0412 37 1 9.6914 -0.4682 3.4815 38 1 9.6609 2.3004 3.5918 39 1 11.1506 1.3495 3.3056 40 1 9.3122 2.6744 1.2351 41 1 11.0980 2.7743 1.3619 42 1 9.7971 0.1463 -1.3224 43 1 8.8922 1.5745 -0.7661 44 1 10.5560 2.1481 -2.3814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414413980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:50 Heat of formation + Delta-G solvation = -143.005726 kcal Electronic energy + Delta-G solvation = -29549.128368 eV Core-core repulsion = 25187.982995 eV Total energy + Delta-G solvation = -4361.145373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.83978 -41.97449 -40.84002 -39.58862 -38.10766 -37.11871 -35.63840 -34.58423 -34.46451 -31.24899 -31.06547 -30.20386 -28.38819 -27.30720 -25.38352 -24.28259 -23.34332 -22.25753 -21.52706 -20.61121 -20.11363 -19.95838 -19.47571 -18.38990 -18.01502 -17.30922 -17.06257 -16.83587 -16.61410 -16.28165 -16.23452 -15.87573 -15.68451 -15.61871 -15.48407 -15.28599 -15.08378 -14.80363 -14.30131 -14.26685 -13.88548 -13.60451 -13.57583 -13.18938 -12.81719 -12.62722 -12.41762 -12.27796 -12.17473 -12.03725 -11.91319 -11.66364 -11.66323 -11.50283 -11.39314 -11.07271 -10.92858 -10.81987 -10.16680 -9.61141 -8.75532 -8.51681 -6.25831 0.17432 0.40262 1.32358 1.37750 1.49828 1.52485 1.99038 2.25780 2.65206 2.75383 3.01684 3.05112 3.21564 3.38863 3.59884 3.65039 3.89601 4.05338 4.13947 4.26276 4.27492 4.39150 4.43435 4.49342 4.53005 4.59813 4.68544 4.72363 4.84993 4.88674 5.03937 5.08186 5.09911 5.18050 5.21868 5.27623 5.31229 5.44588 5.45931 5.54108 5.61587 5.81338 5.89779 6.09066 6.79934 6.87648 6.89284 7.37681 7.47039 8.59341 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.003757 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.334073 B = 7451.564963 C = 9413.204684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.250 1.250 7 C -0.401 4.401 8 H 0.079 0.921 9 O -0.222 6.222 10 C 0.135 3.865 11 C -0.253 4.253 12 C 0.112 3.888 13 F -0.147 7.147 14 C -0.189 4.189 15 C -0.062 4.062 16 C 0.098 3.902 17 N -0.667 5.667 18 C 0.704 3.296 19 O -0.603 6.603 20 N -0.724 5.724 21 C 0.169 3.831 22 H 0.085 0.915 23 C -0.136 4.136 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.093 4.093 27 H 0.099 0.901 28 C 0.083 3.917 29 O -0.587 6.587 30 H 0.286 0.714 31 H 0.126 0.874 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.415 0.585 35 H 0.407 0.593 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.391 4.967 -0.677 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.173 1.173 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.128 6.128 10 C 0.083 3.917 11 C -0.274 4.274 12 C 0.092 3.908 13 F -0.126 7.126 14 C -0.208 4.208 15 C -0.083 4.083 16 C 0.002 3.998 17 N -0.314 5.314 18 C 0.405 3.595 19 O -0.483 6.483 20 N -0.381 5.381 21 C 0.064 3.936 22 H 0.103 0.897 23 C -0.175 4.175 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.112 4.112 27 H 0.117 0.883 28 C 0.005 3.995 29 O -0.395 6.395 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.177 0.823 33 H 0.182 0.818 34 H 0.251 0.749 35 H 0.245 0.755 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 22.967 4.425 0.422 23.393 hybrid contribution -1.727 0.747 -0.872 2.074 sum 21.240 5.172 -0.451 21.865 Atomic orbital electron populations 1.69750 1.07239 1.29815 1.49224 1.25339 0.95853 1.02414 0.95116 0.85203 0.79209 0.76721 0.79585 1.18321 1.20161 1.17341 1.20638 0.77674 0.96204 1.53178 0.90358 1.83430 1.21405 1.25513 1.82496 1.18695 0.90258 0.85449 0.97317 1.20956 1.01287 0.91354 1.13833 1.17510 0.89896 0.80703 1.02671 1.91429 1.78036 1.49008 1.94123 1.20958 0.90475 1.00558 1.08852 1.21046 1.01502 0.88434 0.97317 1.16829 0.85812 0.87344 1.09862 1.42260 1.17001 1.13093 1.59045 1.15955 0.80306 0.84063 0.79136 1.90839 1.74301 1.35804 1.47387 1.45295 1.18191 1.16219 1.58428 1.21518 0.80461 0.99960 0.91703 0.89652 1.22606 1.00585 0.98489 0.95846 1.22348 1.00329 0.95866 0.97164 1.22528 1.02419 0.96055 0.93856 1.22230 0.99940 0.95627 0.93362 0.88281 1.22113 0.91681 0.93437 0.92238 1.86411 1.51127 1.70345 1.31607 0.90478 0.85592 0.82284 0.81804 0.74873 0.75495 0.92587 0.91217 0.91124 0.90351 0.91450 0.90518 0.93293 0.92771 0.75354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.77 13.96 21.61 0.30 -52.46 16 2 C 0.01 0.64 5.49 84.82 0.47 1.11 16 3 Si 0.97 40.80 28.62 68.60 1.96 42.77 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.40 -22.09 9.94 67.91 0.68 -21.42 16 8 H 0.08 4.65 5.44 -2.91 -0.02 4.63 16 9 O -0.22 -10.73 8.00 -22.74 -0.18 -10.92 16 10 C 0.14 5.93 6.66 22.69 0.15 6.08 16 11 C -0.25 -11.19 9.14 22.42 0.20 -10.99 16 12 C 0.11 4.32 7.29 22.37 0.16 4.48 16 13 F -0.15 -5.53 17.26 44.97 0.78 -4.75 16 14 C -0.19 -6.24 10.02 22.33 0.22 -6.01 16 15 C -0.06 -2.12 8.72 22.37 0.19 -1.93 16 16 C 0.10 3.64 6.45 38.22 0.25 3.88 16 17 N -0.67 -20.85 5.29 -316.70 -1.68 -22.53 16 18 C 0.70 20.21 8.36 179.06 1.50 21.71 16 19 O -0.60 -20.62 13.18 -4.01 -0.05 -20.67 16 20 N -0.72 -14.64 4.36 -454.34 -1.98 -16.63 16 21 C 0.17 3.03 3.10 45.71 0.14 3.18 16 22 H 0.09 1.76 7.59 -2.39 -0.02 1.75 16 23 C -0.14 -2.48 6.59 31.32 0.21 -2.28 16 24 C -0.12 -1.63 6.83 31.66 0.22 -1.41 16 25 C -0.11 -1.47 6.26 31.93 0.20 -1.27 16 26 C -0.09 -1.30 3.09 -9.68 -0.03 -1.33 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 C 0.08 1.08 5.51 71.98 0.40 1.48 16 29 O -0.59 -7.92 13.58 -148.98 -2.02 -9.94 16 30 H 0.29 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.13 6.11 5.63 -2.91 -0.02 6.09 16 32 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.16 5.29 5.78 -2.91 -0.02 5.28 16 34 H 0.41 11.79 8.37 -92.71 -0.78 11.01 16 35 H 0.41 6.46 6.55 -92.71 -0.61 5.85 16 36 H 0.06 1.22 7.92 -2.39 -0.02 1.20 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.91 7.97 -2.38 -0.02 0.89 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 0.60 6.40 -2.39 -0.02 0.58 16 44 H 0.40 2.24 9.12 -74.06 -0.68 1.56 16 Total: -1.00 -66.86 365.02 1.11 -65.75 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.97 Total: 34.11 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 4.95 Total: -4.73 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -3.36 Total: -91.62 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.26 Total: -41.53 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.78 Total: -4.75 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.96 Total: 42.77 kcal Total: -66.86 1.11 -65.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414413980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.256 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds