Wall clock time and date at job start Tue Mar 31 2020 20:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86793 * 120.00026 * 2 1 4 4 H 1.48500 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47308 * 300.00020 * 3 2 1 6 6 H 1.48498 * 109.47345 * 59.99823 * 3 2 1 7 7 C 1.39931 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99961 * 196.80387 * 7 2 1 9 9 C 1.41412 * 120.00110 * 16.79858 * 7 2 1 10 10 C 1.40773 * 120.20989 * 25.16287 * 9 7 2 11 11 C 1.37639 * 119.88584 * 180.02562 * 10 9 7 12 12 C 1.38531 * 120.32081 * 0.02562 * 11 10 9 13 13 C 1.39244 * 120.43168 * 359.96213 * 12 11 10 14 14 N 1.39932 * 119.94945 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00161 * 145.79279 * 14 13 12 16 16 O 1.21286 * 119.99812 * 354.89033 * 15 14 13 17 17 C 1.50696 * 119.99943 * 174.88899 * 15 14 13 18 18 C 1.53003 * 109.46750 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46998 * 179.97438 * 18 17 15 20 20 C 1.38365 * 119.85476 * 269.73131 * 19 18 17 21 21 C 1.37963 * 120.14153 * 179.72189 * 20 19 18 22 22 C 1.39576 * 119.85255 * 0.55040 * 21 20 19 23 23 C 1.47847 * 120.13964 * 179.70554 * 22 21 20 24 24 N 1.34774 * 120.00442 * 0.02562 * 23 22 21 25 25 O 1.21553 * 119.99693 * 180.02562 * 23 22 21 26 26 C 1.39569 * 119.71397 * 359.71973 * 22 21 20 27 27 C 1.37959 * 119.85409 * 0.02562 * 26 22 21 28 28 C 1.38285 * 120.10367 * 0.27330 * 13 12 11 29 29 H 0.97002 * 119.99849 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.05628 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.84252 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.78481 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00381 * 325.78976 * 14 13 12 34 34 H 1.09000 * 109.47221 * 59.99941 * 17 15 14 35 35 H 1.08994 * 109.47773 * 299.99717 * 17 15 14 36 36 H 1.09001 * 109.47471 * 60.00437 * 18 17 15 37 37 H 1.08995 * 109.47338 * 299.99802 * 18 17 15 38 38 H 1.07996 * 119.92202 * 359.97438 * 20 19 18 39 39 H 1.07995 * 120.06914 * 180.24837 * 21 20 19 40 40 H 0.97001 * 119.99539 * 0.02562 * 24 23 22 41 41 H 0.96998 * 120.00071 * 180.02562 * 24 23 22 42 42 H 1.08004 * 120.07468 * 179.97438 * 26 22 21 43 43 H 1.07999 * 119.93065 * 179.97438 * 27 26 22 44 44 H 1.08001 * 120.16321 * 179.72330 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8836 2.3964 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2698 9 6 1.3462 -2.4102 -0.3550 10 6 0.2110 -2.3732 -1.1866 11 6 -0.4283 -3.5436 -1.5270 12 6 0.0397 -4.7590 -1.0547 13 6 1.1616 -4.8111 -0.2316 14 7 1.6252 -6.0442 0.2401 15 6 2.9468 -6.2470 0.4101 16 8 3.7399 -5.3957 0.0675 17 6 3.4390 -7.5314 1.0258 18 6 4.9668 -7.5071 1.1033 19 6 5.4590 -8.7912 1.7196 20 6 5.6260 -8.8777 3.0904 21 6 6.0708 -10.0522 3.6614 22 6 6.3634 -11.1510 2.8520 23 6 6.8467 -12.4107 3.4566 24 7 7.0050 -12.5000 4.7920 25 8 7.1011 -13.3658 2.7492 26 6 6.1981 -11.0553 1.4694 27 6 5.7476 -9.8767 0.9116 28 6 1.8146 -3.6456 0.1255 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1577 -1.4280 -1.5568 31 1 -1.2995 -3.5144 -2.1647 32 1 -0.4689 -5.6721 -1.3269 33 1 0.9956 -6.7531 0.4449 34 1 3.1200 -8.3740 0.4123 35 1 3.0256 -7.6353 2.0289 36 1 5.2862 -6.6645 1.7166 37 1 5.3800 -7.4034 0.1000 38 1 5.4039 -8.0251 3.7150 39 1 6.1969 -10.1196 4.7319 40 1 6.8016 -11.7378 5.3565 41 1 7.3225 -13.3263 5.1886 42 1 6.4232 -11.9018 0.8376 43 1 5.6196 -9.8012 -0.1581 44 1 2.6822 -3.6845 0.7675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436285117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:38 Heat of formation + Delta-G solvation = -65.281839 kcal Electronic energy + Delta-G solvation = -26582.907438 eV Core-core repulsion = 22655.901650 eV Total energy + Delta-G solvation = -3927.005788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.34010 -41.02356 -39.49702 -38.91568 -36.21290 -35.26393 -34.80841 -34.52267 -31.86779 -31.74725 -31.25598 -29.64942 -27.26906 -26.37699 -23.78688 -23.61937 -22.88475 -22.49522 -21.28586 -20.95462 -19.49689 -19.16909 -18.15615 -17.87460 -17.43109 -16.88681 -16.64738 -16.41946 -16.16925 -16.04887 -15.84333 -15.69569 -15.26935 -14.99908 -14.67153 -14.50740 -14.27111 -14.12981 -13.85074 -13.77032 -13.50541 -13.00937 -12.89287 -12.81533 -12.77349 -12.44503 -12.24688 -12.17976 -11.95336 -11.79131 -11.50932 -11.21133 -11.14458 -10.86105 -10.75139 -10.62166 -9.95017 -9.74581 -9.39209 -8.74141 -8.59849 -6.36724 -0.19367 0.42057 0.88376 1.00710 1.36422 1.47087 1.51827 1.79790 1.85591 2.20778 2.31512 2.53995 2.73958 2.87068 3.60093 3.74258 3.81006 3.87865 4.01539 4.02970 4.18951 4.30966 4.43446 4.47620 4.51806 4.64108 4.65853 4.83329 4.90596 5.06357 5.10100 5.10636 5.13680 5.21609 5.27234 5.29066 5.34195 5.37912 5.63089 5.77710 5.84087 5.87713 5.92495 6.08831 6.12254 6.35626 6.40146 6.68520 6.70221 6.94353 7.01939 7.26806 7.39275 8.33355 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.001802 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.895271 B =15538.629504 C =16364.260572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.087 3.913 10 C -0.199 4.199 11 C -0.093 4.093 12 C -0.253 4.253 13 C 0.158 3.842 14 N -0.661 5.661 15 C 0.499 3.501 16 O -0.570 6.570 17 C -0.116 4.116 18 C -0.067 4.067 19 C -0.050 4.050 20 C -0.126 4.126 21 C -0.072 4.072 22 C -0.161 4.161 23 C 0.561 3.439 24 N -0.829 5.829 25 O -0.592 6.592 26 C -0.070 4.070 27 C -0.127 4.127 28 C -0.236 4.236 29 H 0.289 0.711 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.422 0.578 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.417 0.583 41 H 0.413 0.587 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -19.755 10.118 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.081 0.919 9 C 0.084 3.916 10 C -0.218 4.218 11 C -0.112 4.112 12 C -0.274 4.274 13 C 0.064 3.936 14 N -0.307 5.307 15 C 0.288 3.712 16 O -0.448 6.448 17 C -0.156 4.156 18 C -0.105 4.105 19 C -0.051 4.051 20 C -0.144 4.144 21 C -0.090 4.090 22 C -0.164 4.164 23 C 0.348 3.652 24 N -0.394 5.394 25 O -0.474 6.474 26 C -0.089 4.089 27 C -0.145 4.145 28 C -0.258 4.258 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.260 0.740 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.166 0.834 39 H 0.179 0.821 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.145 0.855 43 H 0.157 0.843 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.957 -19.550 9.381 23.098 hybrid contribution 0.058 0.667 0.326 0.745 sum 8.015 -18.882 9.707 22.694 Atomic orbital electron populations 1.69866 1.08727 1.30469 1.35809 1.26697 0.95589 1.04240 0.91229 0.85189 0.79133 0.76278 0.79266 1.18881 1.18454 1.18595 1.19753 0.97495 0.92665 1.43167 0.91863 1.17863 0.91944 0.92547 0.89264 1.21297 1.00126 0.97533 1.02887 1.20840 0.98893 0.92308 0.99119 1.20493 1.01747 0.97964 1.07157 1.17534 0.95445 0.84621 0.95977 1.43456 1.08209 1.13899 1.65106 1.21690 0.81573 0.90092 0.77839 1.90754 1.55640 1.47831 1.50549 1.21640 0.96324 0.93566 1.04049 1.20334 0.93787 0.94461 1.01942 1.20119 0.96099 0.94582 0.94256 1.21319 0.99965 0.98816 0.94284 1.21553 0.95531 0.91162 1.00798 1.19948 1.06979 0.94534 0.94922 1.18518 0.76249 0.87221 0.83247 1.43596 1.69035 1.20286 1.06463 1.90795 1.53355 1.40552 1.62736 1.21316 0.95524 0.97950 0.94141 1.21204 1.00125 0.92157 1.01001 1.20935 1.04661 0.92149 1.08007 0.90036 0.87927 0.86085 0.85086 0.74005 0.85945 0.85946 0.90785 0.90972 0.83414 0.82143 0.75018 0.75531 0.85523 0.84267 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.82 10.94 21.82 0.24 -43.58 16 2 C 0.04 1.95 5.16 85.25 0.44 2.39 16 3 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.50 -28.94 9.05 23.46 0.21 -28.73 16 8 H 0.06 3.67 7.90 -2.91 -0.02 3.65 16 9 C 0.09 4.96 5.57 -21.31 -0.12 4.85 16 10 C -0.20 -10.68 8.69 22.75 0.20 -10.49 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.00 16 12 C -0.25 -10.43 9.97 22.58 0.23 -10.21 16 13 C 0.16 6.90 6.25 38.10 0.24 7.14 16 14 N -0.66 -21.03 5.34 -303.66 -1.62 -22.65 16 15 C 0.50 15.66 7.56 87.65 0.66 16.33 16 16 O -0.57 -24.40 13.74 -3.05 -0.04 -24.44 16 17 C -0.12 -2.11 5.68 29.85 0.17 -1.94 16 18 C -0.07 -1.30 4.63 29.85 0.14 -1.16 16 19 C -0.05 -0.79 5.14 -19.80 -0.10 -0.89 16 20 C -0.13 -1.57 9.68 22.23 0.22 -1.36 16 21 C -0.07 -0.76 9.54 22.53 0.21 -0.54 16 22 C -0.16 -2.54 5.87 -20.09 -0.12 -2.66 16 23 C 0.56 9.74 8.05 86.79 0.70 10.44 16 24 N -0.83 -6.34 8.82 -175.60 -1.55 -7.89 16 25 O -0.59 -15.78 17.18 -3.88 -0.07 -15.85 16 26 C -0.07 -1.25 9.60 22.53 0.22 -1.03 16 27 C -0.13 -2.04 9.68 22.23 0.22 -1.83 16 28 C -0.24 -12.52 8.39 22.85 0.19 -12.32 16 29 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 30 H 0.10 5.74 6.17 -2.91 -0.02 5.72 16 31 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 33 H 0.42 9.30 8.82 -92.71 -0.82 8.48 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 37 H 0.07 1.59 8.04 -2.39 -0.02 1.57 16 38 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.16 0.43 6.41 -2.91 -0.02 0.41 16 40 H 0.42 0.44 6.86 -92.71 -0.64 -0.19 16 41 H 0.41 2.26 8.93 -92.71 -0.83 1.43 16 42 H 0.13 2.40 7.65 -2.91 -0.02 2.38 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.09 4.79 6.49 -2.91 -0.02 4.77 16 Total: -1.00 -80.78 377.55 1.71 -79.07 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -1.20 Total: 29.47 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.92 Total: -36.02 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -2.93 Total: -74.11 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.11 Total: -40.29 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -80.78 1.71 -79.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436285117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.790 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds