Wall clock time and date at job start Tue Mar 31 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86802 * 119.99451 * 2 1 4 4 H 1.48506 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47082 * 300.00088 * 3 2 1 6 6 H 1.48499 * 109.47486 * 59.99972 * 3 2 1 7 7 C 1.38646 * 120.00552 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00374 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.35743 * 116.99926 * 185.06026 * 9 7 2 11 11 C 1.38899 * 120.07075 * 354.45831 * 10 9 7 12 12 C 1.38084 * 119.93214 * 179.97438 * 11 10 9 13 13 C 1.38330 * 120.06545 * 359.74736 * 12 11 10 14 14 C 1.38279 * 120.14042 * 0.50723 * 13 12 11 15 15 C 1.50698 * 119.96608 * 179.76401 * 14 13 12 16 16 N 1.46495 * 109.47137 * 269.72971 * 15 14 13 17 17 C 1.34783 * 119.99930 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99820 * 5.04078 * 17 16 15 19 19 C 1.50699 * 120.00197 * 185.03453 * 17 16 15 20 20 C 1.50705 * 115.54411 * 65.14685 * 19 17 16 21 21 C 1.38673 * 120.42156 * 29.45171 * 20 19 17 22 22 C 1.38630 * 118.42136 * 179.72339 * 21 20 19 23 23 C 1.38225 * 119.15989 * 359.97438 * 22 21 20 24 24 N 1.31856 * 120.76594 * 359.97438 * 23 22 21 25 25 C 1.31881 * 121.72346 * 0.02562 * 24 23 22 26 26 C 1.52994 * 117.51983 * 210.84744 * 19 17 16 27 27 C 1.52997 * 117.50020 * 279.47960 * 19 17 16 28 28 C 1.38122 * 120.06759 * 359.49412 * 14 13 12 29 29 H 0.97002 * 120.00921 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03257 * 359.96021 * 11 10 9 31 31 H 1.07995 * 119.96856 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.92855 * 180.27673 * 13 12 11 33 33 H 1.08996 * 109.46925 * 149.72999 * 15 14 13 34 34 H 1.08994 * 109.46777 * 29.72875 * 15 14 13 35 35 H 0.96999 * 120.00553 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.78434 * 359.74578 * 21 20 19 37 37 H 1.07995 * 120.41665 * 180.02562 * 22 21 20 38 38 H 1.08005 * 119.61672 * 179.97438 * 23 22 21 39 39 H 1.08009 * 119.61652 * 180.02562 * 25 24 23 40 40 H 1.09004 * 117.50126 * 214.97001 * 26 19 17 41 41 H 1.08996 * 117.50258 * 359.97438 * 26 19 17 42 42 H 1.08995 * 117.50053 * 359.97438 * 27 19 17 43 43 H 1.09003 * 117.49814 * 144.99582 * 27 19 17 44 44 H 1.07995 * 120.03517 * 180.22280 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8906 2.3966 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5044 0.1078 11 6 3.4575 -3.4392 0.0953 12 6 4.2026 -4.5965 0.2050 13 6 3.5688 -5.8194 0.3326 14 6 2.1877 -5.8882 0.3401 15 6 1.5012 -7.2230 0.4740 16 7 1.2724 -7.7901 -0.8572 17 6 0.6681 -8.9881 -0.9846 18 8 0.2319 -9.5545 -0.0048 19 6 0.5342 -9.6238 -2.3443 20 6 1.8289 -10.0150 -3.0091 21 6 2.9308 -10.3703 -2.2459 22 6 4.0991 -10.7285 -2.9005 23 6 4.1264 -10.7202 -4.2825 24 7 3.0587 -10.3776 -4.9762 25 6 1.9308 -10.0312 -4.3871 26 6 -0.6843 -10.5156 -2.5909 27 6 -0.6024 -9.1345 -3.2441 28 6 1.4368 -4.7341 0.2307 29 1 -0.4851 0.8400 0.0004 30 1 3.9529 -2.4843 -0.0005 31 1 5.2814 -4.5465 0.1958 32 1 4.1538 -6.7227 0.4228 33 1 0.5459 -7.0909 0.9818 34 1 2.1304 -7.8986 1.0535 35 1 1.5557 -7.3035 -1.6470 36 1 2.8798 -10.3683 -1.1671 37 1 4.9765 -11.0113 -2.3379 38 1 5.0329 -10.9976 -4.8001 39 1 1.0767 -9.7570 -4.9887 40 1 -0.5496 -11.3853 -3.2341 41 1 -1.3892 -10.6431 -1.7694 42 1 -1.2535 -8.3531 -2.8525 43 1 -0.4137 -9.0956 -4.3170 44 1 0.3582 -4.7881 0.2402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443917561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:40 Heat of formation + Delta-G solvation = 5.199002 kcal Electronic energy + Delta-G solvation = -27625.567843 eV Core-core repulsion = 23701.618334 eV Total energy + Delta-G solvation = -3923.949509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87448 -40.92492 -40.42046 -38.59387 -37.66473 -35.83228 -34.30121 -33.43449 -32.27495 -31.78746 -30.80685 -27.93955 -27.19841 -25.64755 -24.65185 -23.55408 -23.26869 -23.17303 -22.39007 -20.90137 -19.60107 -18.98369 -18.57320 -17.91866 -17.23487 -17.00188 -16.83755 -16.55689 -16.39598 -16.08754 -15.65317 -15.56431 -15.46994 -15.20615 -14.88921 -14.78340 -14.36562 -14.02288 -13.98478 -13.81833 -13.69695 -13.35839 -13.06878 -13.00022 -12.60261 -12.44250 -12.40870 -12.30686 -12.10577 -12.07800 -11.76036 -11.24193 -11.13140 -10.83231 -10.71372 -10.38520 -10.21145 -9.83940 -9.76262 -9.05652 -8.48446 -6.17089 0.07792 0.27826 0.35180 0.68020 1.35150 1.40065 1.42769 1.53078 2.08180 2.16218 2.56409 2.82500 2.98079 3.13345 3.30073 3.37213 3.58214 3.61220 3.73187 3.79833 3.87696 3.94992 4.03817 4.06556 4.27109 4.30524 4.37443 4.46685 4.49592 4.59762 4.64092 4.69983 4.73591 4.86974 4.92276 4.98631 5.10234 5.12248 5.13678 5.22665 5.26148 5.27639 5.59536 5.67759 5.68976 5.71583 6.00162 6.13725 6.41377 6.96497 6.98816 7.07220 7.76251 8.74798 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.002412 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.505493 B =11605.058238 C =11998.370087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.232 6.232 10 C 0.113 3.887 11 C -0.234 4.234 12 C -0.070 4.070 13 C -0.168 4.168 14 C -0.059 4.059 15 C 0.173 3.827 16 N -0.706 5.706 17 C 0.554 3.446 18 O -0.573 6.573 19 C -0.132 4.132 20 C -0.094 4.094 21 C -0.078 4.078 22 C -0.161 4.161 23 C 0.087 3.913 24 N -0.503 5.503 25 C 0.097 3.903 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.181 4.181 29 H 0.272 0.728 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.410 0.590 36 H 0.126 0.874 37 H 0.162 0.838 38 H 0.181 0.819 39 H 0.173 0.827 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 -21.205 -7.382 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.063 3.937 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.187 4.187 14 C -0.060 4.060 15 C 0.050 3.950 16 N -0.356 5.356 17 C 0.341 3.659 18 O -0.452 6.452 19 C -0.136 4.136 20 C -0.097 4.097 21 C -0.104 4.104 22 C -0.180 4.180 23 C -0.069 4.069 24 N -0.211 5.211 25 C -0.060 4.060 26 C -0.165 4.165 27 C -0.179 4.179 28 C -0.201 4.201 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.246 0.754 36 H 0.144 0.856 37 H 0.179 0.821 38 H 0.198 0.802 39 H 0.190 0.810 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.151 0.849 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.336 -21.438 -7.599 23.899 hybrid contribution 0.008 1.429 0.956 1.720 sum 7.344 -20.008 -6.643 22.325 Atomic orbital electron populations 1.70185 1.08046 1.28748 1.48882 1.26571 0.96815 1.02739 0.95880 0.84542 0.78347 0.74914 0.78500 1.17301 1.19402 1.19508 1.21856 0.92537 0.81330 1.53095 0.87926 1.83947 1.35963 1.12586 1.81361 1.19844 0.91620 0.87838 0.94386 1.21379 0.93020 1.00416 1.10520 1.21161 1.00423 0.91146 0.96010 1.20980 0.93019 0.98259 1.06428 1.19423 0.93974 0.92510 1.00070 1.20085 0.99826 0.90487 0.84573 1.45990 1.60200 1.19893 1.09558 1.19681 0.76365 0.80463 0.89424 1.90694 1.49546 1.64157 1.40805 1.19946 0.90924 1.08521 0.94235 1.19724 0.93414 1.01716 0.94800 1.21564 0.92875 0.95446 1.00546 1.22408 0.99169 1.00284 0.96138 1.23280 0.97170 0.94686 0.91807 1.67779 1.00345 1.11339 1.41660 1.22895 0.96364 0.95419 0.91307 1.23157 0.95275 0.95206 1.02868 1.23367 0.96600 0.98154 0.99790 1.20218 0.99398 0.90205 1.10315 0.91855 0.86189 0.83377 0.83458 0.91721 0.89226 0.75450 0.85592 0.82060 0.80209 0.80978 0.85917 0.88295 0.87872 0.84858 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 13.67 21.61 0.30 -55.57 16 2 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 3 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 4 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.41 -23.43 9.49 67.92 0.64 -22.78 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.61 9.76 -22.71 -0.22 -13.83 16 10 C 0.11 5.40 6.65 22.58 0.15 5.55 16 11 C -0.23 -9.55 9.17 22.39 0.21 -9.34 16 12 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 13 C -0.17 -4.66 9.70 22.30 0.22 -4.45 16 14 C -0.06 -1.84 5.25 -19.88 -0.10 -1.94 16 15 C 0.17 4.59 5.80 85.63 0.50 5.09 16 16 N -0.71 -16.91 5.55 -466.80 -2.59 -19.50 16 17 C 0.55 13.78 5.97 87.66 0.52 14.30 16 18 O -0.57 -18.27 16.70 -3.04 -0.05 -18.32 16 19 C -0.13 -2.48 2.37 -53.68 -0.13 -2.61 16 20 C -0.09 -1.68 5.50 -19.77 -0.11 -1.79 16 21 C -0.08 -1.37 9.44 22.47 0.21 -1.16 16 22 C -0.16 -2.23 10.11 22.36 0.23 -2.00 16 23 C 0.09 1.30 11.18 84.69 0.95 2.24 16 24 N -0.50 -9.53 10.36 -195.83 -2.03 -11.56 16 25 C 0.10 1.64 10.52 84.67 0.89 2.53 16 26 C -0.13 -2.03 9.73 30.59 0.30 -1.73 16 27 C -0.14 -2.05 9.58 30.59 0.29 -1.76 16 28 C -0.18 -7.35 9.65 22.39 0.22 -7.13 16 29 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 34 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 35 H 0.41 9.22 8.47 -92.71 -0.79 8.43 16 36 H 0.13 2.32 7.42 -2.91 -0.02 2.29 16 37 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.17 2.15 5.98 -2.91 -0.02 2.13 16 40 H 0.12 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.82 7.99 -2.39 -0.02 1.80 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.13 1.28 6.14 -2.39 -0.01 1.27 16 44 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -75.05 380.43 3.37 -71.68 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.27 Total: 32.71 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 5.67 Total: -29.68 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -4.32 Total: -86.62 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.27 Total: -32.15 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -75.05 3.37 -71.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443917561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.879 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds