Wall clock time and date at job start Tue Mar 31 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34221 * 117.00454 * 2 1 4 4 O 1.20826 * 120.00183 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00149 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47534 * 180.02562 * 5 3 2 7 7 C 1.36932 * 120.00251 * 270.00353 * 6 5 3 8 8 H 1.07998 * 120.00354 * 188.07504 * 7 6 5 9 9 C 1.38817 * 120.00017 * 8.08045 * 7 6 5 10 10 N 1.31619 * 119.99775 * 26.17335 * 9 7 6 11 11 Si 1.86799 * 119.99712 * 206.18049 * 9 7 6 12 12 H 1.48497 * 109.47549 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47192 * 120.00065 * 11 9 7 14 14 H 1.48507 * 109.46715 * 239.99184 * 11 9 7 15 15 C 1.46508 * 119.99853 * 90.00136 * 6 5 3 16 16 C 1.53004 * 109.46883 * 264.56438 * 15 6 5 17 17 C 1.50703 * 109.46760 * 179.97438 * 16 15 6 18 18 O 1.21280 * 119.99811 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99572 * 180.02562 * 17 16 15 20 20 C 1.39921 * 119.99842 * 184.46961 * 19 17 16 21 21 C 1.38858 * 120.05480 * 332.04634 * 20 19 17 22 22 C 1.38317 * 119.90112 * 180.02562 * 21 20 19 23 23 F 1.35105 * 119.98632 * 180.02562 * 22 21 20 24 24 C 1.38527 * 120.02349 * 359.97438 * 22 21 20 25 25 C 1.38228 * 120.11359 * 0.26245 * 24 22 21 26 26 C 1.38139 * 120.09409 * 359.48470 * 25 24 22 27 27 C 1.50707 * 120.01008 * 180.23394 * 26 25 24 28 28 H 1.08993 * 109.47659 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46695 * 300.00492 * 1 2 3 30 30 H 1.09001 * 109.46839 * 59.99641 * 1 2 3 31 31 H 1.09004 * 109.46865 * 60.00131 * 5 3 2 32 32 H 1.09003 * 109.47047 * 300.00322 * 5 3 2 33 33 H 0.97005 * 119.99482 * 180.02562 * 10 9 7 34 34 H 1.08990 * 109.46992 * 144.56519 * 15 6 5 35 35 H 1.08998 * 109.47050 * 24.56308 * 15 6 5 36 36 H 1.09002 * 109.46797 * 60.00218 * 16 15 6 37 37 H 1.08998 * 109.47171 * 299.99795 * 16 15 6 38 38 H 0.97001 * 120.00467 * 4.46087 * 19 17 16 39 39 H 1.07996 * 120.04797 * 0.05050 * 21 20 19 40 40 H 1.08001 * 119.94211 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.94674 * 179.71654 * 25 24 22 42 42 H 1.08995 * 109.46907 * 270.27610 * 27 26 25 43 43 H 1.09005 * 109.46922 * 30.27556 * 27 26 25 44 44 H 1.08996 * 109.46761 * 150.27698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9819 2.6795 0.0011 7 6 4.1765 3.3364 -1.1845 8 1 4.6065 4.3270 -1.1888 9 6 3.8209 2.7290 -2.3810 10 7 2.8732 1.8159 -2.3993 11 14 4.6876 3.2076 -3.9651 12 1 5.7060 4.2492 -3.6770 13 1 5.3514 2.0132 -4.5465 14 1 3.6940 3.7411 -4.9312 15 6 4.1892 3.3816 1.2701 16 6 2.9179 4.1468 1.6432 17 6 3.1310 4.8685 2.9489 18 8 4.1950 4.7799 3.5241 19 7 2.1391 5.6123 3.4773 20 6 2.3664 6.3571 4.6398 21 6 3.3186 5.9377 5.5594 22 6 3.5403 6.6761 6.7078 23 9 4.4667 6.2700 7.6034 24 6 2.8136 7.8325 6.9394 25 6 1.8620 8.2480 6.0269 26 6 1.6404 7.5171 4.8759 27 6 0.6062 7.9748 3.8798 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7803 -0.8892 32 1 3.9557 0.7806 0.8908 33 1 2.6250 1.3912 -3.2354 34 1 5.0178 4.0821 1.1666 35 1 4.4205 2.6582 2.0520 36 1 2.0894 3.4462 1.7467 37 1 2.6866 4.8702 0.8614 38 1 1.2677 5.6315 3.0517 39 1 3.8855 5.0366 5.3780 40 1 2.9875 8.4078 7.8367 41 1 1.2938 9.1475 6.2124 42 1 -0.3595 7.5363 4.1313 43 1 0.5302 9.0618 3.9084 44 1 0.8999 7.6572 2.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473206977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:20 Heat of formation + Delta-G solvation = -110.602689 kcal Electronic energy + Delta-G solvation = -29430.995155 eV Core-core repulsion = 25071.254883 eV Total energy + Delta-G solvation = -4359.740272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.89453 -40.64380 -39.04509 -38.51872 -36.18194 -34.78982 -34.59310 -32.47370 -32.20714 -30.59267 -29.42071 -27.87842 -26.70775 -26.02683 -24.73329 -23.21373 -21.71386 -21.21621 -20.16808 -19.71739 -18.24953 -17.25510 -16.90859 -16.32287 -16.12731 -16.00502 -15.64835 -15.44147 -15.34231 -15.14800 -15.01276 -14.67994 -14.02440 -13.95871 -13.78513 -13.55908 -13.48118 -13.14582 -12.54734 -12.38796 -12.31580 -12.11452 -11.95432 -11.82793 -11.76466 -11.54302 -11.38936 -11.12707 -10.88420 -10.63724 -10.48550 -10.25738 -10.11688 -9.95891 -9.68244 -9.49144 -9.16781 -8.76820 -8.57319 -8.17188 -7.22763 -6.01989 -3.27248 0.98627 1.12888 2.73132 3.03981 3.31850 3.41145 3.43607 3.51460 3.79499 3.98762 4.21755 4.41348 4.56532 4.72328 4.86320 4.95273 5.06977 5.20100 5.30868 5.37956 5.48566 5.50465 5.70810 5.73838 5.78417 5.80762 5.84867 5.96856 5.99286 6.04224 6.12812 6.23770 6.24991 6.34915 6.36429 6.55452 6.58433 6.88200 6.93140 7.01906 7.38486 7.61812 7.72190 8.06384 8.22522 8.93890 9.30618 9.63839 10.04220 11.09397 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.002846 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.879393 B = 9835.695714 C =10382.073306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.382 6.382 3 C 0.468 3.532 4 O -0.510 6.510 5 C 0.184 3.816 6 N -0.567 5.567 7 C -0.255 4.255 8 H 0.083 0.917 9 C 0.002 3.998 10 N -0.900 5.900 11 Si 0.906 3.094 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.293 1.293 15 C 0.163 3.837 16 C -0.157 4.157 17 C 0.516 3.484 18 O -0.523 6.523 19 N -0.676 5.676 20 C 0.185 3.815 21 C -0.168 4.168 22 C 0.112 3.888 23 F -0.139 7.139 24 C -0.177 4.177 25 C -0.073 4.073 26 C -0.133 4.133 27 C -0.114 4.114 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.055 0.945 33 H 0.257 0.743 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.414 0.586 39 H 0.164 0.836 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.593 6.609 13.514 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.299 6.299 3 C 0.308 3.692 4 O -0.395 6.395 5 C 0.055 3.945 6 N -0.285 5.285 7 C -0.383 4.383 8 H 0.101 0.899 9 C -0.195 4.195 10 N -0.545 5.545 11 Si 0.736 3.264 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.220 1.220 15 C 0.036 3.964 16 C -0.200 4.200 17 C 0.306 3.694 18 O -0.398 6.398 19 N -0.320 5.320 20 C 0.089 3.911 21 C -0.189 4.189 22 C 0.092 3.908 23 F -0.118 7.118 24 C -0.197 4.197 25 C -0.092 4.092 26 C -0.136 4.136 27 C -0.171 4.171 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.251 0.749 39 H 0.181 0.819 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.022 6.701 13.687 16.045 hybrid contribution -0.579 0.378 -1.087 1.288 sum -5.600 7.078 12.600 15.499 Atomic orbital electron populations 1.22845 0.79929 1.01307 1.01130 1.86559 1.20892 1.36821 1.85638 1.25594 0.93524 0.80179 0.69885 1.90402 1.66734 1.36398 1.46009 1.20565 0.85528 0.86665 1.01781 1.44350 1.75070 1.07229 1.01854 1.19331 1.34759 1.01467 0.82745 0.89893 1.24736 0.97353 0.99431 0.98014 1.69859 1.27244 1.31030 1.26405 0.86165 0.79410 0.77817 0.83052 1.20204 1.21373 1.22011 1.20739 0.93366 0.94835 0.87451 1.22671 1.04974 1.00927 0.91394 1.21845 0.82660 0.77413 0.87494 1.90599 1.26102 1.61035 1.62060 1.43945 1.16222 1.46519 1.25357 1.17425 0.96086 0.90943 0.86686 1.21542 1.01796 1.03342 0.92243 1.17523 0.89947 0.95061 0.88276 1.91494 1.63634 1.90341 1.66335 1.21041 0.99262 0.97285 1.02111 1.20620 0.96852 0.99240 0.92454 1.19727 1.01363 0.94374 0.98115 1.20730 0.96840 1.02025 0.97514 0.90215 0.93740 0.92860 0.86732 0.92725 0.93207 0.92149 0.92919 0.88209 0.88337 0.74861 0.81897 0.84974 0.84874 0.90978 0.90954 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.56 101.05 1.07 1.79 16 2 O -0.38 -7.92 10.56 -39.23 -0.41 -8.33 16 3 C 0.47 10.70 6.03 36.00 0.22 10.92 16 4 O -0.51 -12.60 13.63 -18.75 -0.26 -12.86 16 5 C 0.18 4.09 5.58 -5.20 -0.03 4.06 16 6 N -0.57 -13.05 2.07 -174.61 -0.36 -13.41 16 7 C -0.25 -6.47 9.68 -15.06 -0.15 -6.62 16 8 H 0.08 2.09 7.95 -52.49 -0.42 1.67 16 9 C 0.00 0.06 4.87 -17.43 -0.08 -0.02 16 10 N -0.90 -24.22 9.03 55.49 0.50 -23.72 16 11 Si 0.91 20.78 29.63 -169.99 -5.04 15.75 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.16 3.24 5.01 -4.04 -0.02 3.22 16 16 C -0.16 -2.79 5.47 -27.88 -0.15 -2.94 16 17 C 0.52 8.34 7.71 -10.99 -0.08 8.26 16 18 O -0.52 -9.69 13.01 5.56 0.07 -9.62 16 19 N -0.68 -8.90 4.91 -9.87 -0.05 -8.95 16 20 C 0.18 2.45 6.40 -83.70 -0.54 1.91 16 21 C -0.17 -2.46 8.75 -39.32 -0.34 -2.80 16 22 C 0.11 1.48 7.30 -39.45 -0.29 1.19 16 23 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 24 C -0.18 -1.88 10.02 -39.48 -0.40 -2.28 16 25 C -0.07 -0.69 9.69 -39.62 -0.38 -1.08 16 26 C -0.13 -1.42 5.90 -104.42 -0.62 -2.04 16 27 C -0.11 -0.93 9.45 36.01 0.34 -0.59 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.12 2.77 6.31 -51.93 -0.33 2.44 16 32 H 0.05 1.04 7.86 -51.93 -0.41 0.64 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 35 H 0.05 0.99 7.79 -51.93 -0.40 0.58 16 36 H 0.10 1.87 6.38 -51.93 -0.33 1.54 16 37 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.41 4.46 7.54 -40.82 -0.31 4.15 16 39 H 0.16 2.69 5.68 -52.49 -0.30 2.39 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 44 H 0.07 0.58 7.04 -51.93 -0.37 0.22 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -30.81 371.63 -7.15 -37.96 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.79 Total: 6.49 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -1.46 Total: 12.99 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.09 Total: -46.08 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.60 Total: -30.81 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.04 Total: 15.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.81 -7.15 -37.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473206977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.639 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds