Wall clock time and date at job start Tue Mar 31 2020 21:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34221 * 117.00454 * 2 1 4 4 O 1.20826 * 120.00183 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00149 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47534 * 180.02562 * 5 3 2 7 7 C 1.36932 * 120.00251 * 270.00353 * 6 5 3 8 8 H 1.07998 * 120.00354 * 188.07504 * 7 6 5 9 9 C 1.38817 * 120.00017 * 8.08045 * 7 6 5 10 10 N 1.31619 * 119.99775 * 26.17335 * 9 7 6 11 11 Si 1.86799 * 119.99712 * 206.18049 * 9 7 6 12 12 H 1.48497 * 109.47549 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47192 * 120.00065 * 11 9 7 14 14 H 1.48507 * 109.46715 * 239.99184 * 11 9 7 15 15 C 1.46508 * 119.99853 * 90.00136 * 6 5 3 16 16 C 1.53004 * 109.46883 * 264.56438 * 15 6 5 17 17 C 1.50703 * 109.46760 * 179.97438 * 16 15 6 18 18 O 1.21280 * 119.99811 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99572 * 180.02562 * 17 16 15 20 20 C 1.39921 * 119.99842 * 184.46961 * 19 17 16 21 21 C 1.38858 * 120.05480 * 332.04634 * 20 19 17 22 22 C 1.38317 * 119.90112 * 180.02562 * 21 20 19 23 23 F 1.35105 * 119.98632 * 180.02562 * 22 21 20 24 24 C 1.38527 * 120.02349 * 359.97438 * 22 21 20 25 25 C 1.38228 * 120.11359 * 0.26245 * 24 22 21 26 26 C 1.38139 * 120.09409 * 359.48470 * 25 24 22 27 27 C 1.50707 * 120.01008 * 180.23394 * 26 25 24 28 28 H 1.08993 * 109.47659 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46695 * 300.00492 * 1 2 3 30 30 H 1.09001 * 109.46839 * 59.99641 * 1 2 3 31 31 H 1.09004 * 109.46865 * 60.00131 * 5 3 2 32 32 H 1.09003 * 109.47047 * 300.00322 * 5 3 2 33 33 H 0.97005 * 119.99482 * 180.02562 * 10 9 7 34 34 H 1.08990 * 109.46992 * 144.56519 * 15 6 5 35 35 H 1.08998 * 109.47050 * 24.56308 * 15 6 5 36 36 H 1.09002 * 109.46797 * 60.00218 * 16 15 6 37 37 H 1.08998 * 109.47171 * 299.99795 * 16 15 6 38 38 H 0.97001 * 120.00467 * 4.46087 * 19 17 16 39 39 H 1.07996 * 120.04797 * 0.05050 * 21 20 19 40 40 H 1.08001 * 119.94211 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.94674 * 179.71654 * 25 24 22 42 42 H 1.08995 * 109.46907 * 270.27610 * 27 26 25 43 43 H 1.09005 * 109.46922 * 30.27556 * 27 26 25 44 44 H 1.08996 * 109.46761 * 150.27698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9819 2.6795 0.0011 7 6 4.1765 3.3364 -1.1845 8 1 4.6065 4.3270 -1.1888 9 6 3.8209 2.7290 -2.3810 10 7 2.8732 1.8159 -2.3993 11 14 4.6876 3.2076 -3.9651 12 1 5.7060 4.2492 -3.6770 13 1 5.3514 2.0132 -4.5465 14 1 3.6940 3.7411 -4.9312 15 6 4.1892 3.3816 1.2701 16 6 2.9179 4.1468 1.6432 17 6 3.1310 4.8685 2.9489 18 8 4.1950 4.7799 3.5241 19 7 2.1391 5.6123 3.4773 20 6 2.3664 6.3571 4.6398 21 6 3.3186 5.9377 5.5594 22 6 3.5403 6.6761 6.7078 23 9 4.4667 6.2700 7.6034 24 6 2.8136 7.8325 6.9394 25 6 1.8620 8.2480 6.0269 26 6 1.6404 7.5171 4.8759 27 6 0.6062 7.9748 3.8798 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7803 -0.8892 32 1 3.9557 0.7806 0.8908 33 1 2.6250 1.3912 -3.2354 34 1 5.0178 4.0821 1.1666 35 1 4.4205 2.6582 2.0520 36 1 2.0894 3.4462 1.7467 37 1 2.6866 4.8702 0.8614 38 1 1.2677 5.6315 3.0517 39 1 3.8855 5.0366 5.3780 40 1 2.9875 8.4078 7.8367 41 1 1.2938 9.1475 6.2124 42 1 -0.3595 7.5363 4.1313 43 1 0.5302 9.0618 3.9084 44 1 0.8999 7.6572 2.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473206977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:19 Heat of formation + Delta-G solvation = -127.362982 kcal Electronic energy + Delta-G solvation = -29431.721936 eV Core-core repulsion = 25071.254883 eV Total energy + Delta-G solvation = -4360.467053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.91675 -41.78327 -40.75313 -39.62943 -37.88224 -36.39827 -35.87461 -33.97722 -33.30006 -32.06007 -30.68855 -29.49009 -27.63633 -27.54154 -26.26995 -24.40933 -23.01619 -22.37055 -21.60972 -21.31837 -19.30157 -18.87101 -18.38311 -18.03401 -17.33381 -17.11609 -17.01093 -16.83080 -16.59113 -16.45605 -16.43513 -16.14709 -15.48828 -15.37029 -14.90114 -14.64585 -14.54193 -14.38709 -14.08362 -13.91554 -13.69005 -13.36256 -13.23803 -13.06190 -12.87641 -12.71364 -12.65907 -12.64271 -12.45996 -12.37748 -12.03773 -11.91889 -11.72803 -11.53215 -11.30504 -10.97833 -10.83122 -10.47136 -9.71866 -9.14189 -9.08378 -7.97821 -5.23539 0.05155 0.19734 1.47545 1.47993 1.53041 1.61788 1.91506 2.03804 2.35275 2.57461 2.58787 3.23736 3.23960 3.46806 3.74993 3.90536 3.94540 4.08230 4.21412 4.23799 4.36028 4.42651 4.43279 4.49394 4.55575 4.69053 4.72190 4.79922 4.81921 4.92052 4.98195 5.01241 5.03827 5.19138 5.20014 5.26146 5.29340 5.35971 5.43254 5.64345 5.94511 5.99323 6.17675 6.28231 6.98616 7.02345 7.52166 7.78205 8.14145 9.11621 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.002846 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.879393 B = 9835.695714 C =10382.073306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.388 6.388 3 C 0.469 3.531 4 O -0.534 6.534 5 C 0.182 3.818 6 N -0.579 5.579 7 C -0.259 4.259 8 H 0.080 0.920 9 C -0.042 4.042 10 N -0.921 5.921 11 Si 0.963 3.037 12 H -0.271 1.271 13 H -0.288 1.288 14 H -0.301 1.301 15 C 0.164 3.836 16 C -0.139 4.139 17 C 0.522 3.478 18 O -0.550 6.550 19 N -0.661 5.661 20 C 0.160 3.840 21 C -0.191 4.191 22 C 0.088 3.912 23 F -0.150 7.150 24 C -0.165 4.165 25 C -0.064 4.064 26 C -0.124 4.124 27 C -0.115 4.115 28 H 0.121 0.879 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.250 0.750 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.426 0.574 39 H 0.135 0.865 40 H 0.160 0.840 41 H 0.175 0.825 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 8.271 14.635 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.305 6.305 3 C 0.311 3.689 4 O -0.421 6.421 5 C 0.053 3.947 6 N -0.298 5.298 7 C -0.388 4.388 8 H 0.097 0.903 9 C -0.237 4.237 10 N -0.568 5.568 11 Si 0.793 3.207 12 H -0.196 1.196 13 H -0.215 1.215 14 H -0.229 1.229 15 C 0.038 3.962 16 C -0.181 4.181 17 C 0.312 3.688 18 O -0.427 6.427 19 N -0.306 5.306 20 C 0.065 3.935 21 C -0.212 4.212 22 C 0.068 3.932 23 F -0.129 7.129 24 C -0.185 4.185 25 C -0.083 4.083 26 C -0.126 4.126 27 C -0.172 4.172 28 H 0.139 0.861 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.265 0.735 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.192 0.808 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.456 8.373 14.840 18.221 hybrid contribution -0.213 -0.110 -1.321 1.343 sum -6.670 8.263 13.518 17.190 Atomic orbital electron populations 1.23138 0.77535 1.03983 1.00801 1.86507 1.23201 1.35567 1.85191 1.25546 0.93778 0.80357 0.69266 1.90379 1.67326 1.37243 1.47190 1.20532 0.85596 0.86421 1.02175 1.44403 1.75535 1.07666 1.02165 1.19515 1.34030 1.01373 0.83867 0.90257 1.25327 0.98006 1.00062 1.00287 1.69994 1.28320 1.32205 1.26286 0.85275 0.78197 0.77381 0.79865 1.19559 1.21497 1.22929 1.20739 0.93988 0.94988 0.86529 1.22278 1.03379 1.00383 0.92068 1.21383 0.82872 0.77714 0.86879 1.90609 1.27328 1.62208 1.62598 1.43627 1.15953 1.45701 1.25343 1.17590 0.97179 0.92305 0.86436 1.21417 1.02786 1.03227 0.93813 1.17769 0.90896 0.96380 0.88121 1.91460 1.64218 1.90653 1.66556 1.21410 0.98105 0.95870 1.03081 1.21117 0.96096 0.99932 0.91117 1.20099 1.00692 0.92919 0.98933 1.20834 0.96598 1.03525 0.96232 0.86073 0.92718 0.94546 0.88773 0.89720 0.94003 0.92865 0.91934 0.88946 0.89457 0.73481 0.84725 0.82256 0.80762 0.89249 0.88761 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 10.56 113.37 1.20 2.47 16 2 O -0.39 -15.85 10.56 -51.33 -0.54 -16.39 16 3 C 0.47 21.53 6.03 71.24 0.43 21.96 16 4 O -0.53 -26.60 13.63 21.96 0.30 -26.30 16 5 C 0.18 8.15 5.58 85.63 0.48 8.63 16 6 N -0.58 -26.99 2.07 -706.33 -1.46 -28.45 16 7 C -0.26 -13.32 9.68 84.04 0.81 -12.50 16 8 H 0.08 4.05 7.95 -2.91 -0.02 4.03 16 9 C -0.04 -2.17 4.87 84.86 0.41 -1.76 16 10 N -0.92 -50.35 9.03 21.65 0.20 -50.16 16 11 Si 0.96 43.31 29.63 68.60 2.03 45.35 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 15 C 0.16 6.60 5.01 86.38 0.43 7.03 16 16 C -0.14 -5.02 5.47 29.85 0.16 -4.85 16 17 C 0.52 17.22 7.71 87.66 0.68 17.90 16 18 O -0.55 -21.12 13.01 -3.03 -0.04 -21.16 16 19 N -0.66 -17.26 4.91 -303.53 -1.49 -18.75 16 20 C 0.16 4.14 6.40 38.15 0.24 4.38 16 21 C -0.19 -5.71 8.75 22.44 0.20 -5.51 16 22 C 0.09 2.30 7.30 22.36 0.16 2.47 16 23 F -0.15 -4.24 17.27 44.97 0.78 -3.46 16 24 C -0.17 -3.06 10.02 22.34 0.22 -2.84 16 25 C -0.06 -0.97 9.69 22.24 0.22 -0.76 16 26 C -0.12 -2.31 5.90 -19.73 -0.12 -2.42 16 27 C -0.12 -1.47 9.45 71.24 0.67 -0.80 16 28 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.04 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.09 4.63 6.31 -2.38 -0.02 4.62 16 32 H 0.09 3.20 7.86 -2.39 -0.02 3.18 16 33 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 34 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 35 H 0.06 2.36 7.79 -2.39 -0.02 2.35 16 36 H 0.09 3.50 6.38 -2.39 -0.02 3.49 16 37 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.43 8.84 7.54 -92.71 -0.70 8.14 16 39 H 0.14 4.75 5.68 -2.91 -0.02 4.73 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 0.83 8.09 -2.38 -0.02 0.81 16 44 H 0.06 0.89 7.04 -2.39 -0.02 0.88 16 Total: -1.00 -68.30 371.63 6.32 -61.98 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.34 Total: 23.96 kcal Atomic # 6 Polarization: 27.20 SS G_CDS: 6.20 Total: 33.40 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -2.75 Total: -97.36 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -0.28 Total: -63.86 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.30 6.32 -61.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473206977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.385 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds