Wall clock time and date at job start Tue Mar 31 2020 21:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36034 * 116.99907 * 2 1 4 4 C 1.38647 * 119.99421 * 359.97438 * 3 2 1 5 5 C 1.38136 * 120.03934 * 179.74656 * 4 3 2 6 6 C 1.50690 * 119.99034 * 180.27430 * 5 4 3 7 7 C 1.38839 * 120.01932 * 0.54969 * 5 4 3 8 8 N 1.40145 * 120.00506 * 179.71813 * 7 5 4 9 9 C 1.34773 * 120.00355 * 145.00933 * 8 7 5 10 10 O 1.21594 * 119.99637 * 4.51272 * 9 8 7 11 11 N 1.34769 * 120.00689 * 184.50989 * 9 8 7 12 12 C 1.47434 * 125.64520 * 359.69986 * 11 9 8 13 13 C 1.55127 * 104.72430 * 155.81699 * 12 11 9 14 14 C 1.55158 * 101.48667 * 37.29011 * 13 12 11 15 15 O 1.42895 * 110.71860 * 82.70034 * 14 13 12 16 16 C 1.50699 * 110.87144 * 205.90397 * 14 13 12 17 17 H 1.08000 * 119.99907 * 355.06050 * 16 14 13 18 18 C 1.37879 * 120.00112 * 175.06938 * 16 14 13 19 19 N 1.31516 * 120.00072 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00062 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47256 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47310 * 119.99816 * 20 18 16 23 23 H 1.48502 * 109.46881 * 239.99549 * 20 18 16 24 24 C 1.47021 * 125.65352 * 180.02562 * 11 9 8 25 25 C 1.38817 * 119.98931 * 359.45026 * 7 5 4 26 26 C 1.38275 * 119.96283 * 0.27528 * 25 7 5 27 27 F 1.35102 * 120.01570 * 180.02562 * 26 25 7 28 28 H 1.08998 * 109.46998 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47388 * 300.00131 * 1 2 3 30 30 H 1.09000 * 109.47255 * 59.99964 * 1 2 3 31 31 H 1.07995 * 119.98016 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.47376 * 270.27824 * 6 5 4 33 33 H 1.09000 * 109.47387 * 30.27811 * 6 5 4 34 34 H 1.09000 * 109.47418 * 150.27337 * 6 5 4 35 35 H 0.97006 * 119.99707 * 324.73964 * 8 7 5 36 36 H 1.08999 * 110.36137 * 274.74364 * 12 11 9 37 37 H 1.08992 * 110.36752 * 37.06273 * 12 11 9 38 38 H 1.09005 * 111.18477 * 279.18979 * 13 12 11 39 39 H 1.08991 * 110.90871 * 155.27478 * 13 12 11 40 40 H 0.96701 * 114.00183 * 185.02240 * 15 14 13 41 41 H 0.96994 * 120.00291 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.87916 * 300.44056 * 24 11 9 43 43 H 1.08991 * 109.88214 * 61.45188 * 24 11 9 44 44 H 1.08004 * 120.01969 * 180.29527 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2913 2.3748 -0.0005 5 6 1.9174 3.6061 0.0048 6 6 1.0954 4.8691 0.0104 7 6 3.3038 3.6804 -0.0009 8 7 3.9387 4.9298 -0.0015 9 6 5.0992 5.0963 0.6632 10 8 5.6375 4.1442 1.1944 11 7 5.6631 6.3180 0.7391 12 6 5.1240 7.5520 0.1388 13 6 5.7286 8.7005 0.9883 14 6 7.1540 8.1574 1.2723 15 8 8.0252 8.4242 0.1715 16 6 7.7092 8.7455 2.5439 17 1 7.1545 9.5050 3.0748 18 6 8.9254 8.3141 3.0294 19 7 9.6008 7.3891 2.3831 20 14 9.6139 9.0436 4.6052 21 1 8.6685 10.0588 5.1351 22 1 9.7984 7.9661 5.6103 23 1 10.9226 9.6862 4.3227 24 6 6.9212 6.6398 1.4284 25 6 4.0610 2.5169 -0.0004 26 6 3.4337 1.2847 0.0001 27 9 4.1696 0.1517 0.0011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2128 2.3178 -0.0005 32 1 0.8929 5.1754 -1.0159 33 1 0.1535 4.6873 0.5279 34 1 1.6453 5.6582 0.5234 35 1 3.5448 5.6737 -0.4837 36 1 5.4412 7.6382 -0.9004 37 1 4.0362 7.5628 0.2064 38 1 5.1719 8.8402 1.9151 39 1 5.7704 9.6272 0.4161 40 1 8.9070 8.0384 0.2653 41 1 10.4563 7.0853 2.7248 42 1 6.8408 6.3841 2.4850 43 1 7.7441 6.0874 0.9750 44 1 5.1395 2.5741 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476431337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:15 Heat of formation + Delta-G solvation = -146.168578 kcal Electronic energy + Delta-G solvation = -29627.281688 eV Core-core repulsion = 25265.999163 eV Total energy + Delta-G solvation = -4361.282525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.89192 -41.97731 -40.85609 -39.57035 -38.45073 -36.17053 -35.37094 -34.23367 -33.42029 -31.90499 -30.28038 -29.51298 -28.69746 -27.45756 -26.61756 -24.63466 -23.67429 -22.57384 -21.47507 -21.15072 -19.71028 -19.10551 -18.94107 -18.50672 -17.88846 -17.25611 -17.18078 -16.79947 -16.68883 -16.26870 -16.05460 -15.90747 -15.58453 -15.26780 -15.03545 -14.79208 -14.74222 -14.57358 -14.36308 -13.86567 -13.51888 -13.41411 -13.35442 -13.08934 -12.91885 -12.87458 -12.71382 -12.51763 -12.36766 -12.29324 -12.25373 -12.11336 -12.07664 -11.34726 -11.17932 -10.92745 -10.66852 -10.30192 -9.84471 -9.63777 -8.76544 -8.27076 -6.42529 0.00428 0.10969 1.37867 1.42736 1.45201 1.53540 1.91866 2.21252 2.37054 2.49974 2.83308 3.00166 3.22121 3.63194 3.78466 3.81521 3.92012 4.05450 4.16408 4.31158 4.36497 4.40474 4.45008 4.52183 4.58749 4.70145 4.70237 4.76704 4.84418 4.88087 4.91609 5.04077 5.12157 5.14533 5.20481 5.29877 5.35725 5.36490 5.49783 5.70053 5.74250 5.96276 6.09162 6.30070 6.64536 6.87859 7.26842 7.34493 7.38291 8.78965 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002645 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.195282 B =10585.364496 C =11237.907139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.083 3.917 4 C -0.151 4.151 5 C -0.068 4.068 6 C -0.115 4.115 7 C 0.145 3.855 8 N -0.661 5.661 9 C 0.709 3.291 10 O -0.624 6.624 11 N -0.627 5.627 12 C 0.102 3.898 13 C -0.109 4.109 14 C 0.233 3.767 15 O -0.586 6.586 16 C -0.554 4.554 17 H 0.069 0.931 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.962 3.038 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.278 1.278 24 C 0.140 3.860 25 C -0.136 4.136 26 C 0.048 3.952 27 F -0.149 7.149 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.184 0.816 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.424 0.576 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.375 0.625 41 H 0.269 0.731 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.681 -5.321 -7.672 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.249 6.249 3 C 0.036 3.964 4 C -0.170 4.170 5 C -0.071 4.071 6 C -0.171 4.171 7 C 0.049 3.951 8 N -0.312 5.312 9 C 0.411 3.589 10 O -0.505 6.505 11 N -0.363 5.363 12 C -0.019 4.019 13 C -0.147 4.147 14 C 0.192 3.808 15 O -0.394 6.394 16 C -0.592 4.592 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.787 3.213 21 H -0.186 1.186 22 H -0.213 1.213 23 H -0.204 1.204 24 C 0.016 3.984 25 C -0.158 4.158 26 C 0.028 3.972 27 F -0.128 7.128 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.201 0.799 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.265 0.735 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.224 0.776 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.558 -5.990 -7.499 25.438 hybrid contribution 1.947 -0.319 1.030 2.226 sum -21.611 -6.309 -6.470 23.424 Atomic orbital electron populations 1.23482 0.75433 1.05966 1.03071 1.86135 1.24369 1.25532 1.88853 1.18977 0.89715 0.86930 1.00813 1.21152 1.01683 0.88719 1.05417 1.19899 0.90272 0.97621 0.99269 1.20904 0.99591 0.92047 1.04571 1.17107 0.91202 0.83456 1.03286 1.42274 1.22904 1.12081 1.53892 1.15699 0.81095 0.82368 0.79702 1.90885 1.65159 1.40308 1.54180 1.47911 1.25736 1.06583 1.56069 1.22585 0.99579 0.82370 0.97407 1.22757 0.93698 0.97941 1.00282 1.19737 0.88402 0.87516 0.85127 1.86093 1.27836 1.79542 1.45942 1.21863 1.05188 1.23192 1.08951 0.91273 1.25822 0.97127 0.94486 1.00252 1.69810 1.15045 1.29697 1.40968 0.85445 0.78398 0.78274 0.79158 1.18643 1.21266 1.20404 1.22433 0.82497 0.99467 0.93986 1.21012 1.01351 0.90442 1.02957 1.16985 0.87119 0.82015 1.11111 1.91431 1.77376 1.49362 1.94644 0.86438 0.90971 0.90485 0.79886 0.88090 0.88486 0.91406 0.73548 0.90577 0.87299 0.89575 0.88860 0.77609 0.92196 0.95040 0.95298 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.46 10.36 -93.93 -0.97 -8.43 16 3 C 0.08 2.03 6.69 22.53 0.15 2.18 16 4 C -0.15 -2.58 8.69 22.34 0.19 -2.39 16 5 C -0.07 -1.27 5.90 -19.75 -0.12 -1.39 16 6 C -0.11 -1.17 9.47 71.23 0.67 -0.49 16 7 C 0.14 4.03 6.29 38.09 0.24 4.27 16 8 N -0.66 -18.38 4.69 -317.08 -1.49 -19.87 16 9 C 0.71 27.86 8.34 179.06 1.49 29.35 16 10 O -0.62 -30.64 14.08 -4.01 -0.06 -30.70 16 11 N -0.63 -24.59 3.32 -829.31 -2.76 -27.35 16 12 C 0.10 2.99 6.54 86.93 0.57 3.55 16 13 C -0.11 -3.83 6.24 32.06 0.20 -3.63 16 14 C 0.23 10.91 0.85 -10.35 -0.01 10.90 16 15 O -0.59 -28.84 13.07 -148.98 -1.95 -30.79 16 16 C -0.55 -28.47 8.13 25.60 0.21 -28.27 16 17 H 0.07 3.45 7.78 -2.91 -0.02 3.42 16 18 C 0.02 1.25 5.28 84.65 0.45 1.70 16 19 N -0.92 -50.04 10.96 21.45 0.24 -49.80 16 20 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.14 6.87 5.23 86.73 0.45 7.32 16 25 C -0.14 -4.66 8.67 22.42 0.19 -4.47 16 26 C 0.05 1.54 7.31 22.44 0.16 1.71 16 27 F -0.15 -5.33 17.11 44.97 0.77 -4.57 16 28 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 30 H 0.08 0.46 7.66 -2.39 -0.02 0.44 16 31 H 0.18 1.50 6.29 -2.91 -0.02 1.48 16 32 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 34 H 0.07 0.78 7.17 -2.39 -0.02 0.77 16 35 H 0.42 8.26 6.40 -92.70 -0.59 7.67 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.10 7.36 -2.39 -0.02 2.09 16 38 H 0.09 2.88 8.05 -2.38 -0.02 2.87 16 39 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.37 19.51 7.45 -74.06 -0.55 18.96 16 41 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.03 1.73 7.82 -2.38 -0.02 1.71 16 43 H 0.03 1.59 7.92 -2.39 -0.02 1.57 16 44 H 0.13 5.18 6.19 -2.91 -0.02 5.16 16 Total: -1.00 -74.08 364.60 1.71 -72.37 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.08 Total: 33.47 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 5.97 Total: 21.60 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.01 Total: -97.02 kcal Atomic # 8 Polarization: -66.94 SS G_CDS: -2.98 Total: -69.92 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.77 Total: -4.57 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -74.08 1.71 -72.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476431337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.795 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds