Wall clock time and date at job start Tue Mar 31 2020 20:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86793 * 119.99839 * 2 1 4 4 H 1.48504 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47291 * 300.00177 * 3 2 1 6 6 H 1.48499 * 109.47150 * 60.00181 * 3 2 1 7 7 C 1.38953 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00072 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99787 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00169 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99885 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47068 * 180.02562 * 12 10 9 14 14 C 1.47020 * 110.99740 * 293.63187 * 13 12 10 15 15 C 1.53102 * 109.25619 * 177.60754 * 14 13 12 16 16 O 1.43021 * 109.25806 * 56.85417 * 15 14 13 17 17 C 1.43022 * 113.73543 * 301.32686 * 16 15 14 18 18 H 1.09002 * 109.54152 * 298.71331 * 17 16 15 19 19 C 1.52992 * 109.50473 * 178.60477 * 17 16 15 20 20 N 1.46497 * 109.47062 * 65.22069 * 19 17 16 21 21 C 1.34777 * 120.00274 * 180.02562 * 20 19 17 22 22 O 1.21502 * 119.99836 * 359.97438 * 21 20 19 23 23 C 1.48333 * 120.00252 * 179.97438 * 21 20 19 24 24 C 1.42272 * 126.93532 * 179.97438 * 23 21 20 25 25 C 1.35315 * 103.92108 * 180.02562 * 24 23 21 26 26 O 1.34022 * 106.66829 * 0.02562 * 25 24 23 27 27 N 1.20906 * 111.84261 * 359.97438 * 26 25 24 28 28 C 1.47019 * 111.00015 * 170.00234 * 13 12 10 29 29 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99926 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47051 * 60.00159 * 12 10 9 32 32 H 1.09004 * 109.46968 * 300.00203 * 12 10 9 33 33 H 1.08995 * 109.50726 * 297.54665 * 14 13 12 34 34 H 1.08997 * 109.50533 * 57.63704 * 14 13 12 35 35 H 1.08997 * 109.50437 * 176.78256 * 15 14 13 36 36 H 1.09001 * 109.50991 * 296.91561 * 15 14 13 37 37 H 1.08998 * 109.47383 * 305.21495 * 19 17 16 38 38 H 1.08999 * 109.47391 * 185.21475 * 19 17 16 39 39 H 0.97005 * 120.00593 * 359.97438 * 20 19 17 40 40 H 1.08003 * 128.04337 * 0.02562 * 24 23 21 41 41 H 1.07997 * 126.67069 * 179.73996 * 25 24 23 42 42 H 1.09000 * 109.50379 * 62.45672 * 28 13 12 43 43 H 1.08998 * 109.50073 * 302.32300 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0010 13 7 2.1984 -5.9795 -0.0017 14 6 2.9580 -6.0223 -1.2598 15 6 3.9797 -7.1607 -1.1942 16 8 3.2993 -8.3907 -0.9305 17 6 2.5498 -8.3843 0.2876 18 1 3.2232 -8.2217 1.1292 19 6 1.8369 -9.7274 0.4558 20 7 2.8311 -10.7903 0.6238 21 6 2.4315 -12.0668 0.7894 22 8 1.2467 -12.3360 0.7997 23 6 3.4381 -13.1430 0.9589 24 6 3.1834 -14.5305 1.1434 25 6 4.4170 -15.0771 1.2460 26 8 5.2944 -14.0708 1.1283 27 7 4.7409 -13.0076 0.9700 28 6 1.5136 -7.2583 0.2371 29 1 -0.4850 0.8401 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6162 -4.9205 -0.8903 32 1 0.6182 -4.9209 0.8897 33 1 2.2750 -6.1938 -2.0917 34 1 3.4768 -5.0747 -1.4041 35 1 4.5059 -7.2327 -2.1460 36 1 4.6952 -6.9621 -0.3962 37 1 1.2328 -9.9314 -0.4282 38 1 1.1934 -9.6897 1.3348 39 1 3.7770 -10.5755 0.6152 40 1 2.2276 -15.0312 1.1906 41 1 4.6494 -16.1207 1.3982 42 1 0.8076 -7.4495 -0.5710 43 1 0.9788 -7.2131 1.1857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482180855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:08 Heat of formation + Delta-G solvation = -64.939697 kcal Electronic energy + Delta-G solvation = -28322.568966 eV Core-core repulsion = 23984.728751 eV Total energy + Delta-G solvation = -4337.840215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.11551 -41.24156 -40.62077 -39.74810 -36.83860 -36.07608 -35.76686 -35.03573 -33.29705 -33.07128 -32.42357 -30.43633 -28.50489 -26.97627 -25.57030 -25.10691 -23.98416 -23.47724 -21.94171 -21.26648 -21.03334 -19.90442 -19.56639 -18.79331 -18.02658 -17.98318 -17.54943 -17.22777 -17.11339 -16.59625 -16.45080 -16.15330 -15.91248 -15.79950 -15.47783 -15.17275 -15.12417 -14.69648 -14.59604 -14.19582 -14.04318 -13.81966 -13.51647 -13.28415 -13.04406 -12.88665 -12.73084 -12.41856 -12.39028 -12.29668 -12.11896 -11.71253 -11.56177 -11.54018 -11.44902 -10.85313 -10.71961 -10.35028 -10.24694 -10.01023 -9.34875 -8.47614 -5.96173 0.06236 0.79208 1.35727 1.41368 1.55180 1.71377 1.99477 2.03334 2.26183 2.32137 2.55561 2.64287 2.89033 3.19142 3.32413 3.63888 3.69478 3.84175 3.95110 4.02188 4.04907 4.14145 4.26212 4.29857 4.39582 4.43496 4.46016 4.53371 4.57271 4.60491 4.67846 4.82112 4.90355 4.98150 4.99769 5.12013 5.40506 5.75906 5.92753 6.03404 6.10370 6.17340 6.59149 6.81514 7.06656 7.12019 7.55165 8.10450 8.69918 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035827 B = 0.001737 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.340933 B =16112.364680 C =16534.086467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.613 6.613 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.016 3.984 15 C 0.076 3.924 16 O -0.388 6.388 17 C 0.088 3.912 18 H 0.077 0.923 19 C 0.135 3.865 20 N -0.702 5.702 21 C 0.596 3.404 22 O -0.556 6.556 23 C -0.057 4.057 24 C -0.204 4.204 25 C -0.025 4.025 26 O 0.126 5.874 27 N -0.352 5.352 28 C 0.027 3.973 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.414 0.586 40 H 0.192 0.808 41 H 0.278 0.722 42 H 0.053 0.947 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 -29.729 1.744 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.229 3.771 11 O -0.500 6.500 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.112 4.112 15 C 0.000 4.000 16 O -0.307 6.307 17 C 0.030 3.970 18 H 0.095 0.905 19 C 0.012 3.988 20 N -0.353 5.353 21 C 0.381 3.619 22 O -0.434 6.434 23 C -0.215 4.215 24 C -0.227 4.227 25 C -0.105 4.105 26 O 0.048 5.952 27 N -0.052 5.052 28 C -0.101 4.101 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.251 0.749 40 H 0.210 0.790 41 H 0.294 0.706 42 H 0.071 0.929 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.410 -28.686 1.869 29.252 hybrid contribution -1.133 0.978 -0.536 1.589 sum 4.277 -27.709 1.334 28.069 Atomic orbital electron populations 1.69679 1.06827 1.29208 1.50435 1.26031 0.96528 1.02397 0.96332 0.84872 0.78039 0.77159 0.78271 1.19784 1.19674 1.19681 1.19694 0.92702 0.83934 1.49759 0.90225 1.41934 1.09322 1.04696 1.65139 1.20694 0.88301 0.85827 0.82283 1.90459 1.15576 1.87721 1.56196 1.21750 0.93501 0.88360 1.03705 1.61736 1.26010 1.02338 1.35437 1.22860 0.97367 1.01164 0.89776 1.22629 0.93090 0.81750 1.02552 1.87959 1.66040 1.35575 1.41169 1.22315 0.93213 0.93312 0.88158 0.90541 1.21414 0.90508 0.83379 1.03541 1.45737 1.11731 1.06048 1.71753 1.17116 0.86538 0.81811 0.76406 1.90787 1.17301 1.83016 1.52254 1.23599 0.91216 0.96924 1.09757 1.23080 1.02300 0.90710 1.06607 1.26999 0.86325 0.97350 0.99871 1.84778 1.35245 1.11476 1.63667 1.74219 1.08518 1.06359 1.16097 1.22767 0.95798 0.87956 1.03595 0.91336 0.77040 0.91478 0.86713 0.94410 0.90310 0.86591 0.92581 0.90504 0.87949 0.74944 0.79032 0.70625 0.92880 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.79 7.16 -2.92 -0.02 4.77 16 9 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 10 C 0.44 20.66 7.49 87.66 0.66 21.32 16 11 O -0.61 -33.06 13.93 -3.08 -0.04 -33.11 16 12 C 0.06 1.96 5.45 85.56 0.47 2.42 16 13 N -0.53 -16.72 4.46 -899.75 -4.01 -20.73 16 14 C 0.02 0.52 5.29 86.31 0.46 0.98 16 15 C 0.08 2.00 7.01 72.02 0.50 2.50 16 16 O -0.39 -9.65 10.42 -148.98 -1.55 -11.20 16 17 C 0.09 1.92 2.84 30.62 0.09 2.00 16 18 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 19 C 0.14 2.64 5.34 86.38 0.46 3.10 16 20 N -0.70 -14.51 5.50 -465.52 -2.56 -17.07 16 21 C 0.60 13.87 7.85 86.93 0.68 14.55 16 22 O -0.56 -15.77 16.95 -3.72 -0.06 -15.84 16 23 C -0.06 -1.10 7.19 42.96 0.31 -0.79 16 24 C -0.20 -2.43 10.99 22.60 0.25 -2.19 16 25 C -0.03 -0.13 12.28 67.14 0.82 0.69 16 26 O 0.13 1.55 11.18 71.82 0.80 2.36 16 27 N -0.35 -6.46 11.84 -49.52 -0.59 -7.04 16 28 C 0.03 0.63 4.93 86.31 0.43 1.05 16 29 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.40 19.12 7.90 -92.71 -0.73 18.38 16 31 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 32 H 0.11 3.35 8.04 -2.39 -0.02 3.33 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 3.10 5.88 -2.39 -0.01 3.09 16 35 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.41 8.12 8.23 -92.70 -0.76 7.35 16 40 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.28 -1.87 8.06 -2.91 -0.02 -1.89 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 2.08 8.09 -2.39 -0.02 2.06 16 Total: -1.00 -75.69 370.16 -1.35 -77.03 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.42 Total: 33.14 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 6.40 Total: 27.56 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -8.50 Total: -124.76 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -0.86 Total: -57.79 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -75.69 -1.35 -77.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482180855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.094 kcal (2) G-P(sol) polarization free energy of solvation -75.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds