Wall clock time and date at job start Tue Mar 31 2020 21:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35251 * 126.69026 * 2 1 4 4 C 1.42048 * 103.95249 * 180.13024 * 3 2 1 5 5 N 1.39364 * 126.89659 * 179.90990 * 4 3 2 6 6 C 1.34780 * 119.99692 * 359.70920 * 5 4 3 7 7 O 1.21357 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.49383 * 119.99742 * 179.97438 * 6 5 4 9 9 O 1.21351 * 119.99855 * 359.97438 * 8 6 5 10 10 N 1.34772 * 119.99623 * 180.02562 * 8 6 5 11 11 C 1.46506 * 119.99662 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47060 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.51259 * 304.99843 * 12 11 10 14 14 C 1.53295 * 109.55263 * 184.87049 * 12 11 10 15 15 N 1.47148 * 108.38291 * 187.74376 * 14 12 11 16 16 C 1.36939 * 120.98478 * 230.51079 * 15 14 12 17 17 H 1.08002 * 119.99481 * 153.75514 * 16 15 14 18 18 C 1.38810 * 119.99984 * 333.76300 * 16 15 14 19 19 N 1.31624 * 119.99855 * 160.05099 * 18 16 15 20 20 Si 1.86797 * 119.99999 * 340.04629 * 18 16 15 21 21 H 1.48504 * 109.46813 * 91.90416 * 20 18 16 22 22 H 1.48496 * 109.47215 * 211.89914 * 20 18 16 23 23 H 1.48495 * 109.47287 * 331.90461 * 20 18 16 24 24 C 1.47158 * 118.03521 * 50.54282 * 15 14 12 25 25 C 1.53300 * 108.38140 * 309.46032 * 24 15 14 26 26 O 1.42958 * 109.22253 * 52.30063 * 25 24 15 27 27 N 1.30748 * 106.20726 * 359.64748 * 4 3 2 28 28 O 1.20909 * 111.46524 * 0.22621 * 27 4 3 29 29 H 1.09000 * 109.46975 * 180.28587 * 1 2 3 30 30 H 1.09007 * 109.47226 * 300.28727 * 1 2 3 31 31 H 1.09001 * 109.47313 * 60.28579 * 1 2 3 32 32 H 1.07999 * 128.02086 * 0.03982 * 3 2 1 33 33 H 0.96993 * 120.00438 * 179.70719 * 5 4 3 34 34 H 0.97003 * 120.00591 * 359.97438 * 10 8 6 35 35 H 1.08997 * 109.47274 * 59.99620 * 11 10 8 36 36 H 1.09006 * 109.47103 * 299.99866 * 11 10 8 37 37 H 1.08990 * 109.68348 * 307.47335 * 14 12 11 38 38 H 1.09004 * 109.68078 * 68.02709 * 14 12 11 39 39 H 0.96995 * 119.99733 * 179.97438 * 19 18 16 40 40 H 1.08991 * 109.68016 * 189.74016 * 24 15 14 41 41 H 1.09000 * 109.71323 * 69.20242 * 24 15 14 42 42 H 1.09004 * 109.51132 * 292.38061 * 25 24 15 43 43 H 1.08992 * 109.55481 * 172.25116 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0845 0.0000 4 6 3.6251 0.5355 -0.0031 5 7 4.8276 1.2400 -0.0061 6 6 4.8189 2.5878 -0.0121 7 8 3.7640 3.1878 -0.0145 8 6 6.1078 3.3430 -0.0148 9 8 7.1625 2.7429 -0.0110 10 7 6.0991 4.6906 -0.0203 11 6 7.3631 5.4313 -0.0234 12 6 7.0739 6.9337 -0.0302 13 1 6.4265 7.1761 -0.8730 14 6 8.3903 7.7090 -0.1561 15 7 8.1049 9.1409 0.0271 16 6 8.5555 10.0702 -0.8721 17 1 8.0285 11.0053 -0.9919 18 6 9.6893 9.8103 -1.6296 19 7 9.9070 10.4824 -2.7402 20 14 10.9060 8.5069 -1.0727 21 1 10.5493 7.2025 -1.6864 22 1 12.2754 8.8951 -1.4960 23 1 10.8604 8.3870 0.4067 24 6 7.3216 9.5448 1.2056 25 6 6.0572 8.6799 1.2653 26 8 6.4263 7.3009 1.1903 27 7 3.4764 -0.7635 0.0031 28 8 2.3082 -1.0751 0.0049 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3634 0.5183 0.8874 31 1 -0.3634 0.5094 -0.8925 32 1 2.0302 2.1263 0.0006 33 1 5.6707 0.7605 -0.0038 34 1 5.2559 5.1703 -0.0229 35 1 7.9363 5.1680 -0.9123 36 1 7.9365 5.1753 0.8676 37 1 9.0890 7.3729 0.6099 38 1 8.8205 7.5440 -1.1440 39 1 10.6995 10.3010 -3.2692 40 1 7.0441 10.5952 1.1195 41 1 7.9125 9.3940 2.1091 42 1 5.4062 8.9286 0.4271 43 1 5.5320 8.8659 2.2020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482205103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:54 Heat of formation + Delta-G solvation = -7.224003 kcal Electronic energy + Delta-G solvation = -28816.689283 eV Core-core repulsion = 24481.351809 eV Total energy + Delta-G solvation = -4335.337474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.27407 -41.16838 -39.34039 -38.64851 -36.36777 -35.17978 -34.64272 -34.01877 -32.39594 -31.66777 -31.52511 -28.26423 -28.12124 -26.67260 -25.05570 -23.70777 -23.55083 -21.90279 -21.49829 -20.83280 -20.12813 -18.76527 -18.08957 -17.91897 -17.23774 -17.03129 -16.54641 -16.46318 -16.04546 -15.78069 -15.53745 -14.70038 -14.54032 -14.44818 -14.14843 -14.08622 -13.94240 -13.72144 -13.70444 -13.46900 -12.92250 -12.79954 -12.47133 -12.22178 -12.06929 -11.95779 -11.83453 -11.64717 -11.31380 -10.94699 -10.48476 -10.39525 -10.10338 -9.93549 -9.81392 -9.61946 -9.52907 -9.41109 -9.30940 -8.67820 -7.13541 -6.07120 -3.45364 0.69342 1.17831 1.62859 1.97438 2.71142 2.88481 3.06638 3.20988 3.40966 3.42167 3.84471 3.92364 4.09002 4.39979 4.46033 4.62301 4.63011 4.81324 4.95229 5.07678 5.09207 5.20227 5.26003 5.34693 5.46370 5.49590 5.57984 5.69077 5.74532 5.81604 5.88788 5.98371 6.02665 6.10792 6.33506 6.36408 6.39671 6.61835 6.93731 7.24312 7.46779 7.63738 7.75403 7.89227 8.18538 8.75363 9.56261 9.91517 11.08270 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.002200 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.671431 B =12726.300817 C =13388.620102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 C -0.227 4.227 4 C 0.245 3.755 5 N -0.607 5.607 6 C 0.522 3.478 7 O -0.490 6.490 8 C 0.512 3.488 9 O -0.516 6.516 10 N -0.680 5.680 11 C 0.124 3.876 12 C 0.063 3.937 13 H 0.071 0.929 14 C 0.102 3.898 15 N -0.606 5.606 16 C -0.265 4.265 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.286 1.286 22 H -0.300 1.300 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.048 3.952 26 O -0.386 6.386 27 N -0.384 5.384 28 O 0.101 5.899 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.192 0.808 33 H 0.432 0.568 34 H 0.417 0.583 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.050 0.950 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.721 -18.629 6.500 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 C -0.250 4.250 4 C -0.004 4.004 5 N -0.261 5.261 6 C 0.303 3.697 7 O -0.361 6.361 8 C 0.291 3.709 9 O -0.392 6.392 10 N -0.332 5.332 11 C 0.001 3.999 12 C 0.003 3.997 13 H 0.089 0.911 14 C -0.025 4.025 15 N -0.330 5.330 16 C -0.392 4.392 17 H 0.107 0.893 18 C -0.175 4.175 19 N -0.547 5.547 20 Si 0.710 3.290 21 H -0.213 1.213 22 H -0.228 1.228 23 H -0.194 1.194 24 C -0.014 4.014 25 C -0.030 4.030 26 O -0.305 6.305 27 N -0.098 5.098 28 O 0.039 5.961 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.209 0.791 33 H 0.271 0.729 34 H 0.254 0.746 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.769 -19.619 6.503 26.616 hybrid contribution 0.711 0.296 0.001 0.771 sum -16.058 -19.322 6.505 25.952 Atomic orbital electron populations 1.20376 0.83508 1.04787 1.04494 1.24474 0.96587 0.85665 1.01771 1.22724 0.89062 1.02343 1.10878 1.20452 0.88057 0.88998 1.02906 1.42071 1.07228 1.05942 1.70813 1.20422 0.90719 0.81716 0.76845 1.90725 1.32163 1.68023 1.45153 1.19443 0.88213 0.83746 0.79489 1.90817 1.31564 1.68383 1.48455 1.45728 1.11889 1.04750 1.70851 1.21701 0.84707 0.89454 1.04019 1.22904 0.97056 0.91754 0.87979 0.91144 1.21930 0.93851 0.85379 1.01319 1.44337 1.63261 1.00807 1.24629 1.18909 1.07136 0.99613 1.13576 0.89317 1.25275 0.97483 0.97960 0.96799 1.69818 1.28401 1.43434 1.13006 0.87021 0.81368 0.81011 0.79554 1.21342 1.22803 1.19420 1.21649 0.91739 0.98017 0.89988 1.23076 0.97181 0.81554 1.01164 1.87810 1.78307 1.26545 1.37861 1.74088 0.97656 1.12931 1.25118 1.84818 1.10348 1.32416 1.68491 0.89713 0.88869 0.88864 0.79067 0.72912 0.74577 0.88955 0.89623 0.94311 0.89795 0.92545 0.90861 0.94955 0.93146 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.44 36.00 0.38 0.12 16 2 C -0.02 -0.17 7.48 -35.38 -0.26 -0.43 16 3 C -0.23 -2.24 9.79 -39.19 -0.38 -2.63 16 4 C 0.24 2.79 8.17 -154.93 -1.27 1.52 16 5 N -0.61 -6.60 5.41 -11.86 -0.06 -6.66 16 6 C 0.52 6.10 7.85 -11.61 -0.09 6.01 16 7 O -0.49 -6.10 13.75 5.49 0.08 -6.02 16 8 C 0.51 6.52 7.89 -11.62 -0.09 6.43 16 9 O -0.52 -7.58 16.48 5.50 0.09 -7.49 16 10 N -0.68 -8.56 5.50 -60.75 -0.33 -8.90 16 11 C 0.12 1.77 5.35 -4.04 -0.02 1.75 16 12 C 0.06 1.04 2.81 -26.58 -0.07 0.96 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.10 2.09 3.67 -3.54 -0.01 2.08 16 15 N -0.61 -13.75 2.84 -171.83 -0.49 -14.24 16 16 C -0.26 -7.10 10.10 -15.06 -0.15 -7.25 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 18 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 19 N -0.90 -26.90 13.97 55.49 0.78 -26.12 16 20 Si 0.88 21.58 24.28 -169.99 -4.13 17.45 16 21 H -0.29 -6.63 6.58 56.52 0.37 -6.26 16 22 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 24 C 0.11 2.07 6.74 -3.53 -0.02 2.05 16 25 C 0.05 0.74 6.99 37.31 0.26 1.00 16 26 O -0.39 -6.28 10.33 -35.23 -0.36 -6.64 16 27 N -0.38 -4.45 12.10 31.18 0.38 -4.07 16 28 O 0.10 1.00 11.19 17.06 0.19 1.19 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.21 8.14 -51.92 -0.42 -0.21 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.19 1.88 6.22 -52.49 -0.33 1.55 16 33 H 0.43 4.19 8.29 -40.82 -0.34 3.85 16 34 H 0.42 4.87 7.94 -40.82 -0.32 4.54 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.81 6.86 -51.93 -0.36 0.45 16 38 H 0.08 1.86 4.61 -51.93 -0.24 1.62 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -32.59 360.12 -5.70 -38.29 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.42 Total: 5.59 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -1.84 Total: 12.20 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.27 Total: -59.99 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.01 Total: -18.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.13 Total: 17.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.59 -5.70 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482205103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.063 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds