Wall clock time and date at job start Tue Mar 31 2020 21:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35251 * 126.69026 * 2 1 4 4 C 1.42048 * 103.95249 * 180.13024 * 3 2 1 5 5 N 1.39364 * 126.89659 * 179.90990 * 4 3 2 6 6 C 1.34780 * 119.99692 * 359.70920 * 5 4 3 7 7 O 1.21357 * 120.00056 * 0.02562 * 6 5 4 8 8 C 1.49383 * 119.99742 * 179.97438 * 6 5 4 9 9 O 1.21351 * 119.99855 * 359.97438 * 8 6 5 10 10 N 1.34772 * 119.99623 * 180.02562 * 8 6 5 11 11 C 1.46506 * 119.99662 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47060 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.51259 * 304.99843 * 12 11 10 14 14 C 1.53295 * 109.55263 * 184.87049 * 12 11 10 15 15 N 1.47148 * 108.38291 * 187.74376 * 14 12 11 16 16 C 1.36939 * 120.98478 * 230.51079 * 15 14 12 17 17 H 1.08002 * 119.99481 * 153.75514 * 16 15 14 18 18 C 1.38810 * 119.99984 * 333.76300 * 16 15 14 19 19 N 1.31624 * 119.99855 * 160.05099 * 18 16 15 20 20 Si 1.86797 * 119.99999 * 340.04629 * 18 16 15 21 21 H 1.48504 * 109.46813 * 91.90416 * 20 18 16 22 22 H 1.48496 * 109.47215 * 211.89914 * 20 18 16 23 23 H 1.48495 * 109.47287 * 331.90461 * 20 18 16 24 24 C 1.47158 * 118.03521 * 50.54282 * 15 14 12 25 25 C 1.53300 * 108.38140 * 309.46032 * 24 15 14 26 26 O 1.42958 * 109.22253 * 52.30063 * 25 24 15 27 27 N 1.30748 * 106.20726 * 359.64748 * 4 3 2 28 28 O 1.20909 * 111.46524 * 0.22621 * 27 4 3 29 29 H 1.09000 * 109.46975 * 180.28587 * 1 2 3 30 30 H 1.09007 * 109.47226 * 300.28727 * 1 2 3 31 31 H 1.09001 * 109.47313 * 60.28579 * 1 2 3 32 32 H 1.07999 * 128.02086 * 0.03982 * 3 2 1 33 33 H 0.96993 * 120.00438 * 179.70719 * 5 4 3 34 34 H 0.97003 * 120.00591 * 359.97438 * 10 8 6 35 35 H 1.08997 * 109.47274 * 59.99620 * 11 10 8 36 36 H 1.09006 * 109.47103 * 299.99866 * 11 10 8 37 37 H 1.08990 * 109.68348 * 307.47335 * 14 12 11 38 38 H 1.09004 * 109.68078 * 68.02709 * 14 12 11 39 39 H 0.96995 * 119.99733 * 179.97438 * 19 18 16 40 40 H 1.08991 * 109.68016 * 189.74016 * 24 15 14 41 41 H 1.09000 * 109.71323 * 69.20242 * 24 15 14 42 42 H 1.09004 * 109.51132 * 292.38061 * 25 24 15 43 43 H 1.08992 * 109.55481 * 172.25116 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0845 0.0000 4 6 3.6251 0.5355 -0.0031 5 7 4.8276 1.2400 -0.0061 6 6 4.8189 2.5878 -0.0121 7 8 3.7640 3.1878 -0.0145 8 6 6.1078 3.3430 -0.0148 9 8 7.1625 2.7429 -0.0110 10 7 6.0991 4.6906 -0.0203 11 6 7.3631 5.4313 -0.0234 12 6 7.0739 6.9337 -0.0302 13 1 6.4265 7.1761 -0.8730 14 6 8.3903 7.7090 -0.1561 15 7 8.1049 9.1409 0.0271 16 6 8.5555 10.0702 -0.8721 17 1 8.0285 11.0053 -0.9919 18 6 9.6893 9.8103 -1.6296 19 7 9.9070 10.4824 -2.7402 20 14 10.9060 8.5069 -1.0727 21 1 10.5493 7.2025 -1.6864 22 1 12.2754 8.8951 -1.4960 23 1 10.8604 8.3870 0.4067 24 6 7.3216 9.5448 1.2056 25 6 6.0572 8.6799 1.2653 26 8 6.4263 7.3009 1.1903 27 7 3.4764 -0.7635 0.0031 28 8 2.3082 -1.0751 0.0049 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3634 0.5183 0.8874 31 1 -0.3634 0.5094 -0.8925 32 1 2.0302 2.1263 0.0006 33 1 5.6707 0.7605 -0.0038 34 1 5.2559 5.1703 -0.0229 35 1 7.9363 5.1680 -0.9123 36 1 7.9365 5.1753 0.8676 37 1 9.0890 7.3729 0.6099 38 1 8.8205 7.5440 -1.1440 39 1 10.6995 10.3010 -3.2692 40 1 7.0441 10.5952 1.1195 41 1 7.9125 9.3940 2.1091 42 1 5.4062 8.9286 0.4271 43 1 5.5320 8.8659 2.2020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482205103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:53 Heat of formation + Delta-G solvation = -32.735622 kcal Electronic energy + Delta-G solvation = -28817.795550 eV Core-core repulsion = 24481.351809 eV Total energy + Delta-G solvation = -4336.443741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.03897 -42.13898 -40.56749 -39.83456 -37.28794 -36.59726 -36.00042 -34.61304 -33.65326 -33.19473 -32.85240 -29.58796 -28.72195 -28.06778 -26.21803 -25.34718 -24.45687 -23.22599 -22.34055 -21.91753 -21.54653 -19.75794 -19.04797 -18.86269 -18.67008 -17.97641 -17.72804 -17.60183 -17.22411 -17.07989 -16.77118 -16.12993 -15.83944 -15.74274 -15.50071 -15.32673 -14.91688 -14.74162 -14.39911 -14.35782 -14.00198 -13.93932 -13.68425 -13.50629 -13.42178 -13.07236 -12.95822 -12.90997 -12.40820 -12.34061 -12.31204 -12.09255 -11.63353 -11.41785 -11.16153 -11.07165 -10.53845 -10.50046 -10.46032 -10.12301 -8.99711 -8.21106 -5.55141 -0.21753 0.47455 0.69987 1.14518 1.25827 1.40231 1.47354 1.93255 2.01082 2.21609 2.36270 2.63484 2.92954 3.05227 3.20678 3.25419 3.71871 3.78523 3.90451 3.99063 4.06389 4.28925 4.30490 4.39573 4.41827 4.51203 4.57846 4.60173 4.65894 4.76808 4.82924 4.84463 4.94392 4.96530 5.05697 5.16661 5.26705 5.50307 5.76684 5.98908 6.07005 6.15576 6.32298 6.63906 6.79899 7.16118 7.52037 7.92217 8.98040 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.002200 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.671431 B =12726.300817 C =13388.620102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.000 4.000 3 C -0.249 4.249 4 C 0.227 3.773 5 N -0.602 5.602 6 C 0.529 3.471 7 O -0.497 6.497 8 C 0.519 3.481 9 O -0.535 6.535 10 N -0.673 5.673 11 C 0.131 3.869 12 C 0.077 3.923 13 H 0.072 0.928 14 C 0.095 3.905 15 N -0.622 5.622 16 C -0.250 4.250 17 H 0.059 0.941 18 C -0.033 4.033 19 N -0.953 5.953 20 Si 0.939 3.061 21 H -0.266 1.266 22 H -0.311 1.311 23 H -0.264 1.264 24 C 0.104 3.896 25 C 0.055 3.945 26 O -0.383 6.383 27 N -0.405 5.405 28 O 0.098 5.902 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.192 0.808 33 H 0.435 0.565 34 H 0.423 0.577 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.052 0.948 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.715 -20.547 7.889 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.272 4.272 4 C -0.021 4.021 5 N -0.255 5.255 6 C 0.310 3.690 7 O -0.369 6.369 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.326 5.326 11 C 0.008 3.992 12 C 0.017 3.983 13 H 0.090 0.910 14 C -0.031 4.031 15 N -0.347 5.347 16 C -0.380 4.380 17 H 0.077 0.923 18 C -0.228 4.228 19 N -0.598 5.598 20 Si 0.767 3.233 21 H -0.192 1.192 22 H -0.240 1.240 23 H -0.188 1.188 24 C -0.020 4.020 25 C -0.022 4.022 26 O -0.302 6.302 27 N -0.120 5.120 28 O 0.037 5.963 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.209 0.791 33 H 0.275 0.725 34 H 0.261 0.739 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.808 -21.577 7.934 29.703 hybrid contribution 1.179 0.932 -0.379 1.550 sum -17.629 -20.645 7.554 28.179 Atomic orbital electron populations 1.20660 0.80127 1.06426 1.05944 1.25203 0.98111 0.84341 0.98773 1.22811 0.88825 1.02924 1.12656 1.20719 0.88574 0.89313 1.03526 1.41978 1.07536 1.05666 1.70303 1.20093 0.90054 0.81876 0.76958 1.90725 1.32160 1.68223 1.45767 1.19507 0.88286 0.83587 0.78812 1.90813 1.32359 1.68746 1.49371 1.45570 1.11616 1.04735 1.70664 1.21524 0.85327 0.88051 1.04339 1.22631 0.94739 0.92562 0.88369 0.90998 1.21962 0.96122 0.84671 1.00316 1.44472 1.63628 1.01228 1.25414 1.18856 1.06351 0.99325 1.13420 0.92307 1.25872 0.99284 1.00677 0.96960 1.69943 1.29114 1.46221 1.14561 0.86062 0.78319 0.79590 0.79282 1.19193 1.23990 1.18821 1.21883 0.92732 0.98993 0.88432 1.23120 0.95477 0.80359 1.03290 1.87836 1.77917 1.26918 1.37522 1.74081 0.98653 1.13143 1.26102 1.84787 1.10144 1.33097 1.68296 0.88029 0.87221 0.87290 0.79108 0.72491 0.73852 0.88637 0.89471 0.94122 0.91558 0.92811 0.90856 0.94396 0.92977 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.44 71.23 0.74 0.47 16 2 C 0.00 -0.01 7.48 24.99 0.19 0.18 16 3 C -0.25 -4.60 9.79 22.53 0.22 -4.38 16 4 C 0.23 4.99 8.17 134.15 1.10 6.08 16 5 N -0.60 -12.62 5.41 -310.82 -1.68 -14.30 16 6 C 0.53 11.72 7.85 87.25 0.68 12.41 16 7 O -0.50 -11.67 13.75 -3.27 -0.04 -11.71 16 8 C 0.52 12.41 7.89 87.25 0.69 13.09 16 9 O -0.54 -15.01 16.48 -3.25 -0.05 -15.06 16 10 N -0.67 -15.58 5.50 -464.47 -2.55 -18.14 16 11 C 0.13 3.45 5.35 86.38 0.46 3.91 16 12 C 0.08 2.37 2.81 30.69 0.09 2.46 16 13 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 14 C 0.10 3.77 3.67 86.35 0.32 4.09 16 15 N -0.62 -27.77 2.84 -697.55 -1.98 -29.75 16 16 C -0.25 -13.64 10.10 84.03 0.85 -12.79 16 17 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 18 C -0.03 -1.85 5.26 84.86 0.45 -1.41 16 19 N -0.95 -58.34 13.97 21.65 0.30 -58.03 16 20 Si 0.94 44.92 24.28 68.60 1.67 46.59 16 21 H -0.27 -11.71 6.58 99.48 0.65 -11.06 16 22 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 23 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 24 C 0.10 3.69 6.74 86.35 0.58 4.27 16 25 C 0.05 1.52 6.99 72.08 0.50 2.03 16 26 O -0.38 -11.29 10.33 -148.98 -1.54 -12.83 16 27 N -0.40 -9.10 12.10 -56.36 -0.68 -9.78 16 28 O 0.10 1.81 11.19 71.23 0.80 2.60 16 29 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.19 3.50 6.22 -2.91 -0.02 3.48 16 33 H 0.44 8.22 8.29 -92.71 -0.77 7.45 16 34 H 0.42 8.90 7.94 -92.71 -0.74 8.17 16 35 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.09 2.31 8.14 -2.38 -0.02 2.30 16 37 H 0.04 1.61 6.86 -2.39 -0.02 1.59 16 38 H 0.07 2.86 4.61 -2.38 -0.01 2.85 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.07 2.56 7.96 -2.39 -0.02 2.54 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -71.08 360.12 0.57 -70.51 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.53 Total: 19.48 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 6.87 Total: 30.43 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -6.59 Total: -129.99 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.84 Total: -37.01 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.67 Total: 46.59 kcal Total: -71.08 0.57 -70.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482205103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.770 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds