Wall clock time and date at job start Tue Mar 31 2020 20:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47058 * 270.00437 * 3 2 1 5 5 H 1.48503 * 109.46831 * 30.00339 * 3 2 1 6 6 H 1.48498 * 109.46843 * 150.00282 * 3 2 1 7 7 C 1.38812 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00133 * 191.01525 * 7 2 1 9 9 N 1.36938 * 119.99816 * 11.00671 * 7 2 1 10 10 C 1.44793 * 120.18186 * 202.55628 * 9 7 2 11 11 C 1.52361 * 111.74117 * 265.14276 * 10 9 7 12 12 C 1.51309 * 112.41301 * 284.33592 * 11 10 9 13 13 H 1.08999 * 111.31584 * 186.29804 * 12 11 10 14 14 C 1.54719 * 107.22375 * 308.33833 * 12 11 10 15 15 C 1.54231 * 104.37342 * 89.47033 * 14 12 11 16 16 C 1.51122 * 105.28258 * 11.32926 * 15 14 12 17 17 H 1.08997 * 106.48376 * 122.81597 * 16 15 14 18 18 C 1.49814 * 120.18437 * 22.57750 * 9 7 2 19 19 N 1.48069 * 109.76328 * 8.25708 * 16 15 14 20 20 C 1.34774 * 127.84140 * 155.03728 * 19 16 15 21 21 O 1.21285 * 120.00007 * 179.67754 * 20 19 16 22 22 C 1.50705 * 120.00019 * 359.40890 * 20 19 16 23 23 C 1.52996 * 109.47035 * 179.97438 * 22 20 19 24 24 F 1.39903 * 109.47024 * 299.99922 * 23 22 20 25 25 F 1.39903 * 109.47095 * 59.99715 * 23 22 20 26 26 C 1.52994 * 109.46956 * 179.97438 * 23 22 20 27 27 F 1.39903 * 109.47095 * 60.00151 * 26 23 22 28 28 F 1.39900 * 109.46991 * 179.97438 * 26 23 22 29 29 H 0.97000 * 119.99566 * 359.97438 * 1 2 3 30 30 H 1.09000 * 108.92834 * 25.27746 * 10 9 7 31 31 H 1.09003 * 108.93457 * 143.95705 * 10 9 7 32 32 H 1.09003 * 108.31310 * 164.17668 * 11 10 9 33 33 H 1.09000 * 109.99378 * 45.64657 * 11 10 9 34 34 H 1.09008 * 110.45252 * 208.19360 * 14 12 11 35 35 H 1.08997 * 110.45271 * 330.74323 * 14 12 11 36 36 H 1.09007 * 110.28610 * 130.51656 * 15 14 12 37 37 H 1.09005 * 110.28413 * 252.51331 * 15 14 12 38 38 H 1.08998 * 109.54583 * 30.80982 * 18 9 7 39 39 H 1.09004 * 109.54450 * 270.53262 * 18 9 7 40 40 H 1.08998 * 109.46418 * 300.00016 * 22 20 19 41 41 H 1.08997 * 109.46752 * 59.99635 * 22 20 19 42 42 H 1.09002 * 109.47507 * 300.00109 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0753 -1.2108 0.1782 9 7 1.3445 -2.3770 -0.2275 10 6 1.9030 -3.6310 0.2332 11 6 2.7058 -4.3264 -0.8591 12 6 1.8210 -4.9779 -1.8993 13 1 2.4074 -5.5618 -2.6088 14 6 0.8032 -5.8653 -1.1441 15 6 -0.3886 -4.9272 -0.8637 16 6 -0.1272 -3.6920 -1.6943 17 1 -0.9939 -3.5667 -2.3433 18 6 0.0344 -2.3722 -0.9542 19 7 1.0290 -3.9259 -2.5893 20 6 1.3040 -3.3186 -3.7606 21 8 2.3028 -3.6189 -4.3795 22 6 0.3672 -2.2707 -4.3043 23 6 0.9080 -1.7443 -5.6351 24 9 2.1725 -1.1803 -5.4342 25 9 1.0078 -2.7996 -6.5481 26 6 -0.0433 -0.6809 -6.1873 27 9 -0.1436 0.3745 -5.2744 28 9 0.4515 -0.1991 -7.4039 29 1 -0.4849 0.8401 0.0004 30 1 2.5608 -3.4352 1.0800 31 1 1.0911 -4.2811 0.5594 32 1 3.3232 -5.0948 -0.3938 33 1 3.3594 -3.6090 -1.3553 34 1 0.4904 -6.7022 -1.7687 35 1 1.2322 -6.2260 -0.2094 36 1 -1.3221 -5.4008 -1.1679 37 1 -0.4245 -4.6679 0.1944 38 1 0.0167 -1.5490 -1.6685 39 1 -0.7792 -2.2534 -0.2386 40 1 -0.6181 -2.7101 -4.4603 41 1 0.2898 -1.4484 -3.5930 42 1 -1.0284 -1.1207 -6.3439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483810963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:12 Heat of formation + Delta-G solvation = -191.227531 kcal Electronic energy + Delta-G solvation = -32641.591497 eV Core-core repulsion = 27736.498329 eV Total energy + Delta-G solvation = -4905.093168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.78624 -48.53139 -47.42202 -46.89963 -40.41154 -37.96518 -34.66263 -33.30841 -32.19214 -31.28725 -31.04222 -27.72262 -27.13128 -25.63466 -24.01564 -22.90510 -21.49741 -21.03914 -19.44507 -18.79766 -18.46095 -18.10813 -17.59381 -16.97701 -16.69760 -16.34396 -16.02825 -15.49738 -15.26693 -14.67940 -14.54450 -14.29759 -14.13070 -13.84043 -13.67025 -13.59303 -13.33949 -13.31764 -13.18325 -13.05145 -12.86039 -12.57310 -12.27772 -12.21812 -12.09570 -11.70188 -11.50636 -11.29301 -10.91696 -10.87412 -10.84852 -10.73990 -10.47178 -10.26861 -10.11630 -9.82790 -9.62118 -9.40034 -8.58488 -8.19638 -6.79595 -5.81954 -3.21660 2.55723 2.89342 3.19254 3.38545 3.45130 3.47152 3.62108 3.71919 3.88971 3.94683 4.46097 4.56457 4.67141 4.75441 4.79448 5.01873 5.11051 5.23858 5.32415 5.39641 5.50449 5.55061 5.64915 5.67261 5.84353 5.96029 5.99580 6.12946 6.28499 6.36849 6.42814 6.49808 6.63539 6.75819 6.99552 7.21526 7.39542 7.76149 7.93780 8.33501 8.42981 9.14697 9.80867 10.31234 11.27195 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.006445 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.775694 B = 4343.734832 C = 6259.769114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.157 4.157 12 C 0.143 3.857 13 H 0.083 0.917 14 C -0.126 4.126 15 C -0.118 4.118 16 C 0.105 3.895 17 H 0.052 0.948 18 C 0.177 3.823 19 N -0.592 5.592 20 C 0.551 3.449 21 O -0.539 6.539 22 C -0.191 4.191 23 C 0.273 3.727 24 F -0.167 7.167 25 F -0.173 7.173 26 C 0.235 3.765 27 F -0.174 7.174 28 F -0.186 7.186 29 H 0.253 0.747 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -8.887 -7.065 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.198 4.198 12 C 0.040 3.960 13 H 0.101 0.899 14 C -0.164 4.164 15 C -0.156 4.156 16 C 0.000 4.000 17 H 0.071 0.929 18 C 0.052 3.948 19 N -0.325 5.325 20 C 0.338 3.662 21 O -0.417 6.417 22 C -0.232 4.232 23 C 0.235 3.765 24 F -0.147 7.147 25 F -0.154 7.154 26 C 0.181 3.819 27 F -0.155 7.155 28 F -0.167 7.167 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.142 0.858 41 H 0.160 0.840 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.412 -8.802 -7.509 12.773 hybrid contribution 0.618 1.184 -0.126 1.341 sum -4.794 -7.618 -7.635 11.803 Atomic orbital electron populations 1.69941 1.04936 1.25309 1.55967 1.24899 0.95461 0.97934 1.01229 0.86316 0.79043 0.83803 0.77860 1.21362 1.21703 1.20575 1.19209 0.91259 0.84207 1.42681 0.91594 1.44125 1.21675 1.01558 1.64115 1.20458 0.95781 0.88362 0.93476 1.22294 0.99068 1.00057 0.98387 1.21685 0.92944 0.88125 0.93272 0.89917 1.22610 0.95895 0.97348 1.00582 1.21887 0.97860 0.94334 1.01502 1.21970 0.87226 0.97969 0.92799 0.92944 1.21559 0.88699 0.90035 0.94460 1.48810 1.25891 1.38776 1.18987 1.19049 0.85889 0.81324 0.79893 1.90752 1.27828 1.64392 1.58739 1.22853 1.01690 1.02791 0.95827 1.21564 0.82574 0.83225 0.89167 1.93147 1.41618 1.84685 1.95296 1.93089 1.96358 1.57628 1.68278 1.22816 0.99389 0.84513 0.75230 1.93122 1.96974 1.58896 1.66528 1.93057 1.89726 1.89400 1.44481 0.93682 0.93610 0.93648 0.92522 0.91781 0.91711 0.89899 0.91232 0.89294 0.91524 0.92772 0.85766 0.83951 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.70 10.63 55.49 0.59 -24.11 16 2 C 0.00 0.05 5.14 -17.43 -0.09 -0.03 16 3 Si 0.90 21.81 29.57 -169.99 -5.03 16.79 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.44 9.64 -15.06 -0.15 -6.58 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 N -0.59 -13.52 2.90 -172.70 -0.50 -14.02 16 10 C 0.15 2.79 5.35 -5.28 -0.03 2.76 16 11 C -0.16 -2.72 5.13 -27.91 -0.14 -2.86 16 12 C 0.14 2.26 3.77 -66.68 -0.25 2.00 16 13 H 0.08 1.33 8.02 -51.93 -0.42 0.92 16 14 C -0.13 -1.54 6.02 -25.18 -0.15 -1.69 16 15 C -0.12 -1.52 5.80 -27.03 -0.16 -1.67 16 16 C 0.10 1.66 2.17 -68.43 -0.15 1.51 16 17 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 18 C 0.18 3.66 4.48 -2.61 -0.01 3.64 16 19 N -0.59 -10.21 2.62 -157.24 -0.41 -10.62 16 20 C 0.55 10.27 7.65 -10.98 -0.08 10.19 16 21 O -0.54 -11.80 15.20 5.55 0.08 -11.72 16 22 C -0.19 -2.88 4.23 -27.88 -0.12 -3.00 16 23 C 0.27 4.24 1.40 -26.74 -0.04 4.20 16 24 F -0.17 -3.28 16.11 2.25 0.04 -3.24 16 25 F -0.17 -2.75 16.12 2.25 0.04 -2.72 16 26 C 0.24 2.89 4.83 37.15 0.18 3.07 16 27 F -0.17 -2.55 16.80 2.25 0.04 -2.51 16 28 F -0.19 -2.55 17.30 2.25 0.04 -2.51 16 29 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.05 0.90 7.96 -51.93 -0.41 0.49 16 31 H 0.05 0.77 3.93 -51.93 -0.20 0.56 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.08 0.91 7.39 -51.93 -0.38 0.52 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.09 1.21 6.17 -51.93 -0.32 0.89 16 38 H 0.07 1.53 5.30 -51.93 -0.28 1.25 16 39 H 0.05 1.21 7.66 -51.93 -0.40 0.82 16 40 H 0.12 1.30 7.93 -51.93 -0.41 0.89 16 41 H 0.14 2.35 6.13 -51.93 -0.32 2.04 16 42 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -32.43 339.08 -6.38 -38.81 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.19 Total: -0.78 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -1.19 Total: 11.53 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.32 Total: -48.76 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 9 Polarization: -11.13 SS G_CDS: 0.15 Total: -10.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.43 -6.38 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483810963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.416 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds