Wall clock time and date at job start Tue Mar 31 2020 20:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47058 * 270.00437 * 3 2 1 5 5 H 1.48503 * 109.46831 * 30.00339 * 3 2 1 6 6 H 1.48498 * 109.46843 * 150.00282 * 3 2 1 7 7 C 1.38812 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00133 * 191.01525 * 7 2 1 9 9 N 1.36938 * 119.99816 * 11.00671 * 7 2 1 10 10 C 1.44793 * 120.18186 * 202.55628 * 9 7 2 11 11 C 1.52361 * 111.74117 * 265.14276 * 10 9 7 12 12 C 1.51309 * 112.41301 * 284.33592 * 11 10 9 13 13 H 1.08999 * 111.31584 * 186.29804 * 12 11 10 14 14 C 1.54719 * 107.22375 * 308.33833 * 12 11 10 15 15 C 1.54231 * 104.37342 * 89.47033 * 14 12 11 16 16 C 1.51122 * 105.28258 * 11.32926 * 15 14 12 17 17 H 1.08997 * 106.48376 * 122.81597 * 16 15 14 18 18 C 1.49814 * 120.18437 * 22.57750 * 9 7 2 19 19 N 1.48069 * 109.76328 * 8.25708 * 16 15 14 20 20 C 1.34774 * 127.84140 * 155.03728 * 19 16 15 21 21 O 1.21285 * 120.00007 * 179.67754 * 20 19 16 22 22 C 1.50705 * 120.00019 * 359.40890 * 20 19 16 23 23 C 1.52996 * 109.47035 * 179.97438 * 22 20 19 24 24 F 1.39903 * 109.47024 * 299.99922 * 23 22 20 25 25 F 1.39903 * 109.47095 * 59.99715 * 23 22 20 26 26 C 1.52994 * 109.46956 * 179.97438 * 23 22 20 27 27 F 1.39903 * 109.47095 * 60.00151 * 26 23 22 28 28 F 1.39900 * 109.46991 * 179.97438 * 26 23 22 29 29 H 0.97000 * 119.99566 * 359.97438 * 1 2 3 30 30 H 1.09000 * 108.92834 * 25.27746 * 10 9 7 31 31 H 1.09003 * 108.93457 * 143.95705 * 10 9 7 32 32 H 1.09003 * 108.31310 * 164.17668 * 11 10 9 33 33 H 1.09000 * 109.99378 * 45.64657 * 11 10 9 34 34 H 1.09008 * 110.45252 * 208.19360 * 14 12 11 35 35 H 1.08997 * 110.45271 * 330.74323 * 14 12 11 36 36 H 1.09007 * 110.28610 * 130.51656 * 15 14 12 37 37 H 1.09005 * 110.28413 * 252.51331 * 15 14 12 38 38 H 1.08998 * 109.54583 * 30.80982 * 18 9 7 39 39 H 1.09004 * 109.54450 * 270.53262 * 18 9 7 40 40 H 1.08998 * 109.46418 * 300.00016 * 22 20 19 41 41 H 1.08997 * 109.46752 * 59.99635 * 22 20 19 42 42 H 1.09002 * 109.47507 * 300.00109 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0753 -1.2108 0.1782 9 7 1.3445 -2.3770 -0.2275 10 6 1.9030 -3.6310 0.2332 11 6 2.7058 -4.3264 -0.8591 12 6 1.8210 -4.9779 -1.8993 13 1 2.4074 -5.5618 -2.6088 14 6 0.8032 -5.8653 -1.1441 15 6 -0.3886 -4.9272 -0.8637 16 6 -0.1272 -3.6920 -1.6943 17 1 -0.9939 -3.5667 -2.3433 18 6 0.0344 -2.3722 -0.9542 19 7 1.0290 -3.9259 -2.5893 20 6 1.3040 -3.3186 -3.7606 21 8 2.3028 -3.6189 -4.3795 22 6 0.3672 -2.2707 -4.3043 23 6 0.9080 -1.7443 -5.6351 24 9 2.1725 -1.1803 -5.4342 25 9 1.0078 -2.7996 -6.5481 26 6 -0.0433 -0.6809 -6.1873 27 9 -0.1436 0.3745 -5.2744 28 9 0.4515 -0.1991 -7.4039 29 1 -0.4849 0.8401 0.0004 30 1 2.5608 -3.4352 1.0800 31 1 1.0911 -4.2811 0.5594 32 1 3.3232 -5.0948 -0.3938 33 1 3.3594 -3.6090 -1.3553 34 1 0.4904 -6.7022 -1.7687 35 1 1.2322 -6.2260 -0.2094 36 1 -1.3221 -5.4008 -1.1679 37 1 -0.4245 -4.6679 0.1944 38 1 0.0167 -1.5490 -1.6685 39 1 -0.7792 -2.2534 -0.2386 40 1 -0.6181 -2.7101 -4.4603 41 1 0.2898 -1.4484 -3.5930 42 1 -1.0284 -1.1207 -6.3439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483810963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:11 Heat of formation + Delta-G solvation = -211.218510 kcal Electronic energy + Delta-G solvation = -32642.458371 eV Core-core repulsion = 27736.498329 eV Total energy + Delta-G solvation = -4905.960042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.93274 -49.70211 -48.57281 -48.13034 -41.74618 -39.41110 -36.39477 -34.66800 -33.56202 -32.86564 -32.45727 -28.86410 -28.76113 -27.04886 -25.72891 -24.14776 -22.79634 -22.33357 -20.94457 -20.07216 -19.58404 -19.39128 -18.81508 -18.47117 -17.87499 -17.79221 -17.32911 -17.05386 -16.69194 -16.21345 -15.89035 -15.58436 -15.47332 -15.19871 -15.08759 -14.80105 -14.69797 -14.64883 -14.63043 -14.46351 -14.01818 -13.95989 -13.69178 -13.45151 -13.31964 -13.25961 -12.98797 -12.83037 -12.68559 -12.38990 -12.27723 -12.05417 -11.96831 -11.85224 -11.64196 -11.52486 -11.06930 -10.76432 -10.57969 -9.60513 -8.68046 -7.85046 -5.23840 1.39481 1.40419 1.44685 1.48720 1.54343 1.95880 2.47676 2.49038 2.71672 2.80477 2.91667 3.27404 3.40401 3.60659 3.63897 3.68767 3.78192 3.89331 4.07900 4.15444 4.18132 4.28508 4.31963 4.49975 4.65413 4.68521 4.79050 4.95219 5.02584 5.11650 5.14332 5.21216 5.27371 5.40940 5.57199 5.57467 5.69608 5.75084 6.36231 6.57793 7.03509 7.18256 7.92339 8.36341 9.20116 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.006445 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.775694 B = 4343.734832 C = 6259.769114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.037 4.037 3 Si 0.942 3.058 4 H -0.297 1.297 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.048 0.952 9 N -0.608 5.608 10 C 0.144 3.856 11 C -0.146 4.146 12 C 0.132 3.868 13 H 0.078 0.922 14 C -0.112 4.112 15 C -0.113 4.113 16 C 0.106 3.894 17 H 0.084 0.916 18 C 0.185 3.815 19 N -0.594 5.594 20 C 0.537 3.463 21 O -0.583 6.583 22 C -0.185 4.185 23 C 0.259 3.741 24 F -0.201 7.201 25 F -0.176 7.176 26 C 0.241 3.759 27 F -0.190 7.190 28 F -0.195 7.195 29 H 0.250 0.750 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.014 0.986 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.177 0.823 41 H 0.126 0.874 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 -11.040 -7.155 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.773 3.227 4 H -0.225 1.225 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.066 0.934 9 N -0.331 5.331 10 C 0.017 3.983 11 C -0.187 4.187 12 C 0.029 3.971 13 H 0.096 0.904 14 C -0.150 4.150 15 C -0.151 4.151 16 C 0.002 3.998 17 H 0.102 0.898 18 C 0.061 3.939 19 N -0.325 5.325 20 C 0.326 3.674 21 O -0.464 6.464 22 C -0.225 4.225 23 C 0.221 3.779 24 F -0.182 7.182 25 F -0.157 7.157 26 C 0.187 3.813 27 F -0.171 7.171 28 F -0.176 7.176 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.033 0.967 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.194 0.806 41 H 0.144 0.856 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.703 -10.980 -7.572 15.402 hybrid contribution 1.413 1.820 -0.066 2.305 sum -6.289 -9.160 -7.638 13.483 Atomic orbital electron populations 1.70039 1.05249 1.25253 1.56735 1.25333 0.96201 0.99669 1.02077 0.85641 0.78365 0.81702 0.77025 1.22482 1.21302 1.20441 1.19309 0.90869 0.86085 1.42043 0.93370 1.44371 1.22287 1.01701 1.64776 1.20647 0.96595 0.87571 0.93469 1.22157 0.98802 0.99591 0.98180 1.21882 0.93961 0.88349 0.92868 0.90398 1.22593 0.94152 0.96975 1.01257 1.21926 0.99863 0.92801 1.00461 1.21928 0.87689 0.97093 0.93078 0.89834 1.21357 0.86864 0.92233 0.93474 1.48979 1.26377 1.38554 1.18597 1.19710 0.85900 0.81625 0.80200 1.90720 1.29657 1.65880 1.60144 1.22882 1.03360 1.01275 0.94944 1.22114 0.81820 0.84225 0.89773 1.93071 1.44319 1.85264 1.95570 1.93071 1.96340 1.57961 1.68283 1.23309 1.00850 0.83090 0.74013 1.93091 1.96995 1.59742 1.67292 1.93036 1.90152 1.89468 1.44961 0.94088 0.95060 0.90392 0.89559 0.96676 0.89031 0.88097 0.87445 0.89908 0.94412 0.94639 0.80565 0.85615 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.65 10.63 21.65 0.23 -50.42 16 2 C -0.04 -2.03 5.14 84.86 0.44 -1.59 16 3 Si 0.94 45.89 29.57 68.60 2.03 47.91 16 4 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 7 C -0.25 -13.72 9.64 84.03 0.81 -12.91 16 8 H 0.05 2.72 7.85 -2.91 -0.02 2.70 16 9 N -0.61 -28.05 2.90 -700.30 -2.03 -30.08 16 10 C 0.14 5.36 5.35 86.49 0.46 5.82 16 11 C -0.15 -4.99 5.13 29.83 0.15 -4.84 16 12 C 0.13 3.92 3.77 44.61 0.17 4.09 16 13 H 0.08 2.41 8.02 -2.39 -0.02 2.39 16 14 C -0.11 -2.20 6.02 31.60 0.19 -2.01 16 15 C -0.11 -2.37 5.80 30.40 0.18 -2.19 16 16 C 0.11 3.06 2.17 43.81 0.10 3.16 16 17 H 0.08 1.94 7.54 -2.39 -0.02 1.92 16 18 C 0.19 7.54 4.48 85.46 0.38 7.93 16 19 N -0.59 -19.59 2.62 -769.79 -2.01 -21.61 16 20 C 0.54 19.82 7.65 87.66 0.67 20.49 16 21 O -0.58 -26.06 15.20 -3.05 -0.05 -26.10 16 22 C -0.19 -5.35 4.23 29.85 0.13 -5.22 16 23 C 0.26 7.87 1.40 30.59 0.04 7.91 16 24 F -0.20 -8.23 16.11 44.97 0.72 -7.50 16 25 F -0.18 -5.44 16.12 44.97 0.72 -4.72 16 26 C 0.24 5.45 4.83 71.98 0.35 5.80 16 27 F -0.19 -5.41 16.80 44.97 0.76 -4.65 16 28 F -0.20 -5.13 17.30 44.97 0.78 -4.36 16 29 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.03 1.23 7.96 -2.39 -0.02 1.21 16 31 H 0.08 2.42 3.93 -2.39 -0.01 2.41 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.10 1.68 7.39 -2.39 -0.02 1.66 16 36 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.08 1.89 6.17 -2.38 -0.01 1.88 16 38 H 0.04 1.74 5.30 -2.39 -0.01 1.73 16 39 H 0.04 1.58 7.66 -2.38 -0.02 1.56 16 40 H 0.18 3.02 7.93 -2.39 -0.02 3.01 16 41 H 0.13 4.17 6.13 -2.39 -0.01 4.15 16 42 H 0.21 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.06 339.08 6.28 -69.78 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.07 Total: 5.31 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 4.06 Total: 26.43 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.81 Total: -102.10 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 9 Polarization: -24.21 SS G_CDS: 2.98 Total: -21.23 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.06 6.28 -69.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483810963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.434 kcal (2) G-P(sol) polarization free energy of solvation -76.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds