Wall clock time and date at job start Tue Mar 31 2020 20:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47109 * 274.98439 * 3 2 1 5 5 H 1.48503 * 109.46980 * 34.97940 * 3 2 1 6 6 H 1.48496 * 109.47373 * 154.98178 * 3 2 1 7 7 C 1.38817 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00064 * 186.83332 * 7 2 1 9 9 N 1.36939 * 119.99954 * 6.83731 * 7 2 1 10 10 C 1.47421 * 125.64858 * 173.89711 * 9 7 2 11 11 C 1.54903 * 104.83315 * 155.85141 * 10 9 7 12 12 C 1.55156 * 101.58351 * 37.00756 * 11 10 9 13 13 O 1.42904 * 110.86819 * 82.93293 * 12 11 10 14 14 C 1.52995 * 110.72286 * 206.13369 * 12 11 10 15 15 N 1.46506 * 109.47004 * 174.97843 * 14 12 11 16 16 C 1.34779 * 119.99714 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99654 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.47220 * 179.97438 * 18 16 15 20 20 C 1.35937 * 117.00375 * 179.97438 * 19 18 16 21 21 C 1.38711 * 120.03201 * 359.72235 * 20 19 18 22 22 C 1.38143 * 119.97157 * 179.79155 * 21 20 19 23 23 C 1.38453 * 120.03414 * 0.48558 * 22 21 20 24 24 F 1.35096 * 119.97358 * 179.72376 * 23 22 21 25 25 C 1.38455 * 120.05596 * 359.74305 * 23 22 21 26 26 C 1.38145 * 120.03166 * 0.02562 * 25 23 22 27 27 C 1.47020 * 125.64921 * 353.87699 * 9 7 2 28 28 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 29 29 H 1.09002 * 110.36874 * 274.69210 * 10 9 7 30 30 H 1.09003 * 110.36453 * 37.01470 * 10 9 7 31 31 H 1.09001 * 111.00516 * 155.08843 * 11 10 9 32 32 H 1.09003 * 111.00465 * 278.93407 * 11 10 9 33 33 H 0.96699 * 113.99785 * 184.93705 * 13 12 11 34 34 H 1.09004 * 109.47460 * 294.98022 * 14 12 11 35 35 H 1.08995 * 109.46875 * 54.97773 * 14 12 11 36 36 H 0.97002 * 119.99820 * 0.02562 * 15 14 12 37 37 H 1.09006 * 109.46558 * 299.99139 * 18 16 15 38 38 H 1.08995 * 109.47676 * 59.99438 * 18 16 15 39 39 H 1.08004 * 120.00994 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.98690 * 180.24943 * 22 21 20 41 41 H 1.08007 * 119.98389 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.01746 * 180.02562 * 26 25 23 43 43 H 1.09006 * 109.87818 * 300.49317 * 27 9 7 44 44 H 1.08994 * 109.88526 * 61.50338 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0844 -1.2055 0.1118 9 7 1.3328 -2.3840 -0.1401 10 6 1.9488 -3.7156 -0.2837 11 6 0.8667 -4.7083 0.2091 12 6 -0.4313 -4.0413 -0.3179 13 8 -0.6586 -4.3815 -1.6871 14 6 -1.6321 -4.4383 0.5430 15 7 -2.8175 -3.7021 0.0968 16 6 -4.0005 -3.8917 0.7142 17 8 -4.0837 -4.6721 1.6388 18 6 -5.2200 -3.1349 0.2549 19 8 -6.3416 -3.5056 1.0590 20 6 -7.5294 -2.9091 0.7741 21 6 -7.6116 -1.9820 -0.2544 22 6 -8.8202 -1.3797 -0.5457 23 6 -9.9471 -1.6935 0.1949 24 9 -11.1272 -1.0997 -0.0873 25 6 -9.8655 -2.6152 1.2249 26 6 -8.6592 -3.2226 1.5152 27 6 -0.1293 -2.5349 -0.1726 28 1 -0.4850 0.8401 -0.0004 29 1 2.1943 -3.9095 -1.3278 30 1 2.8420 -3.7892 0.3369 31 1 1.0083 -5.6933 -0.2358 32 1 0.8599 -4.7704 1.2974 33 1 -1.4156 -3.9295 -2.0842 34 1 -1.8112 -5.5091 0.4452 35 1 -1.4265 -4.1981 1.5861 36 1 -2.7510 -3.0782 -0.6430 37 1 -5.0409 -2.0641 0.3520 38 1 -5.4257 -3.3758 -0.7881 39 1 -6.7316 -1.7333 -0.8291 40 1 -8.8853 -0.6608 -1.3490 41 1 -10.7454 -2.8595 1.8016 42 1 -8.5959 -3.9418 2.3184 43 1 -0.5615 -2.1580 0.7544 44 1 -0.5396 -1.9885 -1.0217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484249674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:02 Heat of formation + Delta-G solvation = -107.670189 kcal Electronic energy + Delta-G solvation = -28642.565057 eV Core-core repulsion = 24282.951948 eV Total energy + Delta-G solvation = -4359.613109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.08896 -40.64371 -39.64650 -38.45850 -37.27870 -35.15806 -34.13393 -32.31100 -31.67135 -30.50232 -29.64470 -28.59334 -27.56486 -25.70244 -23.83627 -23.31569 -22.46504 -20.92910 -20.11310 -19.90116 -18.75089 -17.97879 -17.64926 -16.97275 -16.65196 -16.59141 -16.20208 -15.79003 -15.63718 -15.00270 -14.91573 -14.63500 -14.28988 -14.06794 -14.00111 -13.94808 -13.45332 -13.30864 -13.26513 -12.96408 -12.60679 -12.56900 -12.31484 -12.10736 -11.67114 -11.28327 -11.24133 -11.20776 -10.90398 -10.72086 -10.53966 -10.36693 -10.10354 -9.88084 -9.81001 -9.54795 -9.39128 -9.04775 -8.71903 -8.42812 -6.93974 -5.85255 -3.15671 0.80167 0.88262 2.35249 2.53007 3.23092 3.33780 3.39865 3.41005 3.49581 3.99842 4.29054 4.39420 4.41660 4.48793 4.54211 4.69319 4.78929 4.84234 4.90950 4.97927 5.21499 5.24823 5.38818 5.42287 5.52082 5.54694 5.76821 5.80723 5.82569 5.86885 5.90590 6.08370 6.21097 6.32311 6.35536 6.41873 6.57295 6.84070 6.96219 7.20490 7.34055 7.41236 7.64336 7.98171 8.11721 8.14019 9.09799 9.70700 10.36513 11.27935 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.002400 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.462076 B =11665.783618 C =13302.519670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.136 3.864 11 C -0.115 4.115 12 C 0.085 3.915 13 O -0.550 6.550 14 C 0.112 3.888 15 N -0.716 5.716 16 C 0.518 3.482 17 O -0.522 6.522 18 C 0.038 3.962 19 O -0.285 6.285 20 C 0.125 3.875 21 C -0.182 4.182 22 C -0.110 4.110 23 C 0.055 3.945 24 F -0.143 7.143 25 C -0.113 4.113 26 C -0.121 4.121 27 C 0.162 3.838 28 H 0.252 0.748 29 H 0.026 0.974 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.367 0.633 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.404 0.596 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.052 0.948 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.314 -6.375 -1.746 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.010 3.990 11 C -0.153 4.153 12 C 0.044 3.956 13 O -0.355 6.355 14 C -0.012 4.012 15 N -0.370 5.370 16 C 0.302 3.698 17 O -0.397 6.397 18 C -0.040 4.040 19 O -0.197 6.197 20 C 0.079 3.921 21 C -0.201 4.201 22 C -0.129 4.129 23 C 0.036 3.964 24 F -0.121 7.121 25 C -0.131 4.131 26 C -0.139 4.139 27 C 0.037 3.963 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.214 0.786 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.239 0.761 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.071 0.929 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.860 -7.223 -0.794 17.446 hybrid contribution -0.190 1.977 -0.733 2.117 sum -16.051 -5.247 -1.528 16.955 Atomic orbital electron populations 1.69905 1.04948 1.25053 1.57387 1.24790 0.95787 0.97707 1.02167 0.86084 0.78742 0.83383 0.77498 1.21616 1.21772 1.20604 1.19109 0.91230 0.82434 1.42564 0.90230 1.44370 1.01066 1.01511 1.86082 1.21566 0.94366 0.85435 0.97653 1.22709 0.93564 0.98753 1.00306 1.22928 0.93001 0.98784 0.80922 1.86527 1.53371 1.70548 1.25010 1.22007 0.83504 0.96093 0.99588 1.45733 1.08377 1.45724 1.37133 1.19851 0.83863 0.82894 0.83181 1.90744 1.85046 1.35909 1.28046 1.22561 0.84943 1.00790 0.95753 1.86176 1.14726 1.62820 1.55987 1.19090 0.85994 0.92749 0.94307 1.21196 0.99098 0.99824 1.00006 1.20954 0.91219 1.00652 1.00097 1.17591 0.81787 0.98038 0.98996 1.91490 1.44957 1.82519 1.93168 1.20962 0.98612 0.96381 0.97181 1.20309 0.89542 1.02647 1.01449 1.21802 0.85962 0.87137 1.01448 0.93813 0.95626 0.94014 0.90837 0.90154 0.78607 0.91001 0.90260 0.76141 0.88267 0.88704 0.84124 0.84312 0.84003 0.83875 0.92948 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.28 10.36 55.49 0.57 -24.70 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 21.38 29.56 -169.99 -5.02 16.35 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.05 10.26 -15.06 -0.15 -6.20 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.60 -14.68 3.39 -170.08 -0.58 -15.26 16 10 C 0.14 2.73 7.23 -2.53 -0.02 2.71 16 11 C -0.11 -1.91 6.26 -24.59 -0.15 -2.07 16 12 C 0.09 1.43 0.92 -88.79 -0.08 1.35 16 13 O -0.55 -8.74 13.10 -35.23 -0.46 -9.20 16 14 C 0.11 1.67 4.73 -4.04 -0.02 1.65 16 15 N -0.72 -9.32 5.17 -60.29 -0.31 -9.64 16 16 C 0.52 7.19 7.91 -10.98 -0.09 7.10 16 17 O -0.52 -9.45 16.50 -14.35 -0.24 -9.68 16 18 C 0.04 0.39 5.22 36.00 0.19 0.58 16 19 O -0.29 -3.54 9.67 -39.45 -0.38 -3.92 16 20 C 0.12 1.31 6.69 -39.23 -0.26 1.05 16 21 C -0.18 -1.61 9.04 -39.44 -0.36 -1.97 16 22 C -0.11 -0.95 10.02 -39.54 -0.40 -1.35 16 23 C 0.06 0.52 7.30 -39.42 -0.29 0.23 16 24 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 25 C -0.11 -0.96 10.02 -39.54 -0.40 -1.36 16 26 C -0.12 -1.14 9.98 -39.44 -0.39 -1.53 16 27 C 0.16 3.50 4.16 -3.07 -0.01 3.48 16 28 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 33 H 0.37 4.54 8.12 45.56 0.37 4.91 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.40 4.50 7.38 -40.82 -0.30 4.19 16 37 H 0.10 0.86 7.65 -51.93 -0.40 0.46 16 38 H 0.10 0.68 7.67 -51.93 -0.40 0.28 16 39 H 0.14 0.95 6.30 -52.48 -0.33 0.62 16 40 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.05 1.27 7.23 -51.93 -0.38 0.89 16 44 H 0.05 1.17 7.28 -51.93 -0.38 0.79 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -33.52 372.24 -8.45 -41.97 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.16 Total: 6.53 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.53 Total: 3.36 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.31 Total: -49.60 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.08 Total: -22.80 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.52 -8.45 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484249674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.698 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds