Wall clock time and date at job start Tue Mar 31 2020 20:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47109 * 274.98439 * 3 2 1 5 5 H 1.48503 * 109.46980 * 34.97940 * 3 2 1 6 6 H 1.48496 * 109.47373 * 154.98178 * 3 2 1 7 7 C 1.38817 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00064 * 186.83332 * 7 2 1 9 9 N 1.36939 * 119.99954 * 6.83731 * 7 2 1 10 10 C 1.47421 * 125.64858 * 173.89711 * 9 7 2 11 11 C 1.54903 * 104.83315 * 155.85141 * 10 9 7 12 12 C 1.55156 * 101.58351 * 37.00756 * 11 10 9 13 13 O 1.42904 * 110.86819 * 82.93293 * 12 11 10 14 14 C 1.52995 * 110.72286 * 206.13369 * 12 11 10 15 15 N 1.46506 * 109.47004 * 174.97843 * 14 12 11 16 16 C 1.34779 * 119.99714 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99654 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.47220 * 179.97438 * 18 16 15 20 20 C 1.35937 * 117.00375 * 179.97438 * 19 18 16 21 21 C 1.38711 * 120.03201 * 359.72235 * 20 19 18 22 22 C 1.38143 * 119.97157 * 179.79155 * 21 20 19 23 23 C 1.38453 * 120.03414 * 0.48558 * 22 21 20 24 24 F 1.35096 * 119.97358 * 179.72376 * 23 22 21 25 25 C 1.38455 * 120.05596 * 359.74305 * 23 22 21 26 26 C 1.38145 * 120.03166 * 0.02562 * 25 23 22 27 27 C 1.47020 * 125.64921 * 353.87699 * 9 7 2 28 28 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 29 29 H 1.09002 * 110.36874 * 274.69210 * 10 9 7 30 30 H 1.09003 * 110.36453 * 37.01470 * 10 9 7 31 31 H 1.09001 * 111.00516 * 155.08843 * 11 10 9 32 32 H 1.09003 * 111.00465 * 278.93407 * 11 10 9 33 33 H 0.96699 * 113.99785 * 184.93705 * 13 12 11 34 34 H 1.09004 * 109.47460 * 294.98022 * 14 12 11 35 35 H 1.08995 * 109.46875 * 54.97773 * 14 12 11 36 36 H 0.97002 * 119.99820 * 0.02562 * 15 14 12 37 37 H 1.09006 * 109.46558 * 299.99139 * 18 16 15 38 38 H 1.08995 * 109.47676 * 59.99438 * 18 16 15 39 39 H 1.08004 * 120.00994 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.98690 * 180.24943 * 22 21 20 41 41 H 1.08007 * 119.98389 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.01746 * 180.02562 * 26 25 23 43 43 H 1.09006 * 109.87818 * 300.49317 * 27 9 7 44 44 H 1.08994 * 109.88526 * 61.50338 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0844 -1.2055 0.1118 9 7 1.3328 -2.3840 -0.1401 10 6 1.9488 -3.7156 -0.2837 11 6 0.8667 -4.7083 0.2091 12 6 -0.4313 -4.0413 -0.3179 13 8 -0.6586 -4.3815 -1.6871 14 6 -1.6321 -4.4383 0.5430 15 7 -2.8175 -3.7021 0.0968 16 6 -4.0005 -3.8917 0.7142 17 8 -4.0837 -4.6721 1.6388 18 6 -5.2200 -3.1349 0.2549 19 8 -6.3416 -3.5056 1.0590 20 6 -7.5294 -2.9091 0.7741 21 6 -7.6116 -1.9820 -0.2544 22 6 -8.8202 -1.3797 -0.5457 23 6 -9.9471 -1.6935 0.1949 24 9 -11.1272 -1.0997 -0.0873 25 6 -9.8655 -2.6152 1.2249 26 6 -8.6592 -3.2226 1.5152 27 6 -0.1293 -2.5349 -0.1726 28 1 -0.4850 0.8401 -0.0004 29 1 2.1943 -3.9095 -1.3278 30 1 2.8420 -3.7892 0.3369 31 1 1.0083 -5.6933 -0.2358 32 1 0.8599 -4.7704 1.2974 33 1 -1.4156 -3.9295 -2.0842 34 1 -1.8112 -5.5091 0.4452 35 1 -1.4265 -4.1981 1.5861 36 1 -2.7510 -3.0782 -0.6430 37 1 -5.0409 -2.0641 0.3520 38 1 -5.4257 -3.3758 -0.7881 39 1 -6.7316 -1.7333 -0.8291 40 1 -8.8853 -0.6608 -1.3490 41 1 -10.7454 -2.8595 1.8016 42 1 -8.5959 -3.9418 2.3184 43 1 -0.5615 -2.1580 0.7544 44 1 -0.5396 -1.9885 -1.0217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484249674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:01 Heat of formation + Delta-G solvation = -131.095695 kcal Electronic energy + Delta-G solvation = -28643.580863 eV Core-core repulsion = 24282.951948 eV Total energy + Delta-G solvation = -4360.628916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.82907 -41.53107 -40.75282 -39.76467 -38.09580 -36.72522 -35.34925 -34.12170 -32.35935 -31.62829 -30.81936 -29.87007 -28.83327 -27.32131 -25.27227 -24.13206 -23.24757 -22.33576 -21.48176 -21.28618 -19.50691 -19.19919 -18.65384 -18.38542 -17.80533 -17.48088 -17.29993 -16.85692 -16.54761 -16.31602 -16.02751 -15.73725 -15.66481 -15.48280 -15.29199 -14.72944 -14.66725 -14.45174 -14.24398 -13.99858 -13.94134 -13.74041 -13.35206 -13.30237 -13.28138 -13.01726 -12.71236 -12.38573 -12.11082 -11.97039 -11.94719 -11.91767 -11.77755 -11.68746 -11.00084 -10.84954 -10.70753 -10.22627 -10.19882 -9.16419 -8.87476 -7.87245 -5.19077 0.14460 0.17037 1.42415 1.47464 1.48336 1.49043 1.56533 2.49368 2.54349 2.57944 3.19938 3.31222 3.31855 3.42561 3.53583 3.74556 3.80353 3.89351 3.92039 3.97109 4.01320 4.09655 4.17178 4.31277 4.47474 4.53902 4.56898 4.72993 4.82465 4.89721 4.96423 5.02613 5.10564 5.12816 5.19133 5.24746 5.33748 5.42176 5.51982 5.65259 5.68249 6.19113 6.19936 6.39936 6.79732 7.07399 7.11346 7.76709 8.41605 9.23571 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.002400 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.462076 B =11665.783618 C =13302.519670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.627 5.627 10 C 0.129 3.871 11 C -0.108 4.108 12 C 0.105 3.895 13 O -0.552 6.552 14 C 0.122 3.878 15 N -0.708 5.708 16 C 0.516 3.484 17 O -0.570 6.570 18 C 0.041 3.959 19 O -0.312 6.312 20 C 0.107 3.893 21 C -0.181 4.181 22 C -0.112 4.112 23 C 0.040 3.960 24 F -0.149 7.149 25 C -0.110 4.110 26 C -0.131 4.131 27 C 0.173 3.827 28 H 0.248 0.752 29 H 0.023 0.977 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.384 0.616 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.414 0.586 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.148 0.852 43 H 0.021 0.979 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 -6.550 -2.702 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.253 4.253 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.354 5.354 10 C 0.004 3.996 11 C -0.146 4.146 12 C 0.064 3.936 13 O -0.360 6.360 14 C -0.003 4.003 15 N -0.362 5.362 16 C 0.302 3.698 17 O -0.448 6.448 18 C -0.037 4.037 19 O -0.225 6.225 20 C 0.062 3.938 21 C -0.199 4.199 22 C -0.130 4.130 23 C 0.021 3.979 24 F -0.128 7.128 25 C -0.129 4.129 26 C -0.150 4.150 27 C 0.048 3.952 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.233 0.767 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.135 0.865 38 H 0.150 0.850 39 H 0.180 0.820 40 H 0.175 0.825 41 H 0.179 0.821 42 H 0.166 0.834 43 H 0.039 0.961 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -16.230 -7.400 -1.786 17.927 hybrid contribution -0.061 2.031 -0.462 2.084 sum -16.292 -5.369 -2.248 17.300 Atomic orbital electron populations 1.70075 1.05800 1.25242 1.57952 1.25526 0.96746 1.00471 1.02537 0.85148 0.77861 0.79662 0.77185 1.21508 1.22138 1.19792 1.19418 0.91601 0.83875 1.42360 0.90369 1.44701 1.02427 1.02351 1.85931 1.21727 0.95656 0.84535 0.97685 1.22708 0.91893 0.98962 1.01054 1.22563 0.93950 0.95255 0.81878 1.86499 1.54546 1.70535 1.24375 1.21777 0.83471 0.96817 0.98223 1.45652 1.07836 1.45516 1.37211 1.20492 0.84768 0.82264 0.82236 1.90720 1.85813 1.38147 1.30145 1.22659 0.82996 1.00938 0.97113 1.86127 1.15610 1.63699 1.57043 1.19310 0.85557 0.93609 0.95347 1.21418 0.99947 0.99031 0.99536 1.21206 0.90826 1.00702 1.00308 1.17843 0.81900 0.98511 0.99639 1.91473 1.45364 1.82682 1.93265 1.21154 0.98985 0.95750 0.96997 1.20485 0.89744 1.03025 1.01743 1.21588 0.84548 0.90279 0.98799 0.94267 0.95935 0.93493 0.88145 0.89272 0.76731 0.89872 0.91908 0.74931 0.86487 0.85022 0.81955 0.82459 0.82114 0.83443 0.96123 0.95502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.05 10.36 21.65 0.22 -51.83 16 2 C -0.06 -3.20 5.48 84.86 0.47 -2.74 16 3 Si 0.97 44.04 29.56 68.60 2.03 46.07 16 4 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.16 10.26 84.03 0.86 -12.30 16 8 H 0.08 4.11 7.84 -2.91 -0.02 4.08 16 9 N -0.63 -30.61 3.39 -692.01 -2.35 -32.96 16 10 C 0.13 5.07 7.23 86.85 0.63 5.70 16 11 C -0.11 -3.40 6.26 31.98 0.20 -3.20 16 12 C 0.11 3.40 0.92 -9.61 -0.01 3.39 16 13 O -0.55 -16.39 13.10 -148.98 -1.95 -18.34 16 14 C 0.12 3.51 4.73 86.38 0.41 3.92 16 15 N -0.71 -17.68 5.17 -463.06 -2.40 -20.08 16 16 C 0.52 13.89 7.91 87.66 0.69 14.58 16 17 O -0.57 -20.64 16.50 16.03 0.26 -20.38 16 18 C 0.04 0.76 5.22 71.24 0.37 1.13 16 19 O -0.31 -7.47 9.67 -73.80 -0.71 -8.18 16 20 C 0.11 2.13 6.69 22.50 0.15 2.28 16 21 C -0.18 -2.82 9.04 22.36 0.20 -2.62 16 22 C -0.11 -1.72 10.02 22.30 0.22 -1.50 16 23 C 0.04 0.71 7.30 22.37 0.16 0.87 16 24 F -0.15 -2.88 17.27 44.97 0.78 -2.10 16 25 C -0.11 -1.77 10.02 22.30 0.22 -1.54 16 26 C -0.13 -2.39 9.98 22.36 0.22 -2.17 16 27 C 0.17 7.52 4.16 86.73 0.36 7.88 16 28 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.09 2.66 8.04 -2.39 -0.02 2.64 16 33 H 0.38 8.63 8.12 -74.06 -0.60 8.03 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 36 H 0.41 8.64 7.38 -92.71 -0.68 7.96 16 37 H 0.12 1.78 7.65 -2.38 -0.02 1.76 16 38 H 0.13 1.47 7.67 -2.39 -0.02 1.45 16 39 H 0.16 1.70 6.30 -2.91 -0.02 1.68 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.02 1.02 7.23 -2.38 -0.02 1.00 16 44 H 0.03 1.27 7.28 -2.39 -0.02 1.26 16 Total: -1.00 -73.05 372.24 0.82 -72.24 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.23 Total: 21.86 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 5.17 Total: 13.69 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.52 Total: -104.86 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -2.40 Total: -46.90 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.05 0.82 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484249674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.860 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds