Wall clock time and date at job start Tue Mar 31 2020 20:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21274 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99587 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.46756 * 180.02562 * 17 15 14 19 19 O 1.42899 * 109.47012 * 180.02562 * 18 17 15 20 20 C 1.35902 * 117.00284 * 179.97438 * 19 18 17 21 21 C 1.38780 * 120.03916 * 359.72318 * 20 19 18 22 22 C 1.38132 * 119.99017 * 179.74817 * 21 20 19 23 23 C 1.38245 * 120.08425 * 0.52540 * 22 21 20 24 24 C 1.38481 * 120.08457 * 359.75044 * 23 22 21 25 25 F 1.35096 * 119.99709 * 179.97438 * 24 23 22 26 26 C 1.38382 * 120.00371 * 359.97438 * 24 23 22 27 27 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 28 28 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 29 29 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 30 30 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 31 31 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 32 32 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 33 33 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 34 34 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 35 35 H 1.08998 * 109.47307 * 300.00221 * 17 15 14 36 36 H 1.08993 * 109.47428 * 60.00427 * 17 15 14 37 37 H 1.08998 * 109.46930 * 299.99885 * 18 17 15 38 38 H 1.08997 * 109.47740 * 59.99834 * 18 17 15 39 39 H 1.08000 * 120.00263 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.95405 * 180.27583 * 22 21 20 41 41 H 1.07994 * 119.95885 * 179.76369 * 23 22 21 42 42 H 1.07997 * 120.04412 * 180.02562 * 26 24 23 43 43 H 1.09001 * 113.46935 * 321.86111 * 27 9 7 44 44 H 1.09004 * 113.46453 * 92.23850 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0123 -0.9440 4.4398 17 6 7.4671 0.8990 4.2022 18 6 7.5284 0.8100 5.7284 19 8 8.3905 1.8329 6.2309 20 6 8.5556 1.8938 7.5784 21 6 7.8963 0.9908 8.4006 22 6 8.0689 1.0504 9.7698 23 6 8.8893 2.0155 10.3236 24 6 9.5443 2.9218 9.5067 25 9 10.3452 3.8645 10.0497 26 6 9.3784 2.8618 8.1341 27 6 4.4122 -2.2290 -0.3436 28 1 -0.4850 -0.8367 0.0748 29 1 4.6585 0.1322 -1.2473 30 1 4.2790 0.6435 0.4530 31 1 7.3158 -0.6161 0.0950 32 1 4.4664 -1.2102 2.2427 33 1 5.8529 -2.3197 2.1221 34 1 6.7868 0.3168 1.7318 35 1 8.4673 0.7654 3.7903 36 1 7.0814 1.8757 3.9101 37 1 6.5282 0.9435 6.1405 38 1 7.9143 -0.1666 6.0203 39 1 7.2520 0.2389 7.9696 40 1 7.5591 0.3446 10.4088 41 1 9.0198 2.0626 11.3946 42 1 9.8892 3.5681 7.4964 43 1 4.2424 -3.1307 0.2449 44 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484276074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:35 Heat of formation + Delta-G solvation = -74.592708 kcal Electronic energy + Delta-G solvation = -28157.406607 eV Core-core repulsion = 23799.227845 eV Total energy + Delta-G solvation = -4358.178762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.30164 -40.64255 -40.13431 -39.09960 -37.65765 -35.49585 -34.32154 -32.67678 -32.32714 -31.07858 -30.02096 -28.62554 -26.57954 -25.62932 -24.59574 -23.31310 -22.25489 -21.74979 -20.63928 -19.37662 -19.07704 -17.80671 -17.54178 -17.09521 -16.84607 -16.75647 -16.50159 -16.16891 -16.00111 -15.91498 -15.33427 -15.07439 -14.75660 -14.40125 -14.17754 -14.13786 -13.53656 -13.42848 -13.22639 -13.16616 -12.93138 -12.58312 -12.37365 -12.18046 -12.08284 -12.06640 -11.75394 -11.36941 -11.16372 -11.14212 -10.78807 -10.45778 -10.20964 -10.09952 -9.31837 -9.31212 -9.26369 -9.01004 -8.96966 -8.72575 -7.28565 -6.41559 -3.34299 0.70787 0.86367 2.34770 2.43791 3.16783 3.17381 3.29477 3.34437 3.55595 3.94377 4.15863 4.22549 4.38859 4.49746 4.54775 4.55644 4.56184 4.63600 4.69135 4.75297 4.85597 4.89325 4.96417 5.05808 5.31663 5.34867 5.39919 5.53348 5.58648 5.65490 5.79623 5.91599 5.93300 6.01834 6.10889 6.16700 6.20241 6.28056 6.28474 6.52212 6.89334 6.93585 7.23841 7.66820 8.00067 8.14751 8.87539 9.38651 10.21907 11.11054 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.002050 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.841046 B =13654.964877 C =14255.473576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.023 4.023 3 Si 1.070 2.930 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.305 4.305 8 H 0.086 0.914 9 N -0.619 5.619 10 C 0.079 3.921 11 C 0.064 3.936 12 O -0.546 6.546 13 C 0.123 3.877 14 N -0.726 5.726 15 C 0.521 3.479 16 O -0.537 6.537 17 C -0.141 4.141 18 C 0.074 3.926 19 O -0.312 6.312 20 C 0.165 3.835 21 C -0.217 4.217 22 C -0.049 4.049 23 C -0.194 4.194 24 C 0.136 3.864 25 F -0.135 7.135 26 C -0.192 4.192 27 C 0.144 3.856 28 H 0.262 0.738 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.364 0.636 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.398 0.602 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.055 0.945 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.141 3.875 15.295 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.222 4.222 3 Si 0.903 3.097 4 H -0.221 1.221 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.431 4.431 8 H 0.104 0.896 9 N -0.350 5.350 10 C -0.047 4.047 11 C 0.022 3.978 12 O -0.349 6.349 13 C 0.000 4.000 14 N -0.378 5.378 15 C 0.306 3.694 16 O -0.414 6.414 17 C -0.181 4.181 18 C -0.002 4.002 19 O -0.226 6.226 20 C 0.118 3.882 21 C -0.236 4.236 22 C -0.067 4.067 23 C -0.213 4.213 24 C 0.117 3.883 25 F -0.114 7.114 26 C -0.211 4.211 27 C 0.017 3.983 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.211 0.789 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.232 0.768 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.073 0.927 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.078 4.640 15.269 26.438 hybrid contribution 0.615 -0.918 0.105 1.110 sum 21.692 3.722 15.374 26.847 Atomic orbital electron populations 1.70914 1.05263 1.29633 1.51329 1.25749 0.96470 1.00968 0.99000 0.83692 0.73937 0.76097 0.75967 1.22074 1.22278 1.21315 1.20092 0.77924 0.95953 1.49150 0.89588 1.45684 1.02123 1.01682 1.85463 1.23464 0.88086 0.93980 0.99180 1.23730 0.82151 1.01299 0.90659 1.86624 1.23253 1.66131 1.58875 1.21613 0.95925 0.90579 0.91886 1.45879 1.49388 1.35367 1.07189 1.20147 0.81854 0.85071 0.82301 1.90750 1.49913 1.44248 1.56461 1.21469 1.01654 1.00124 0.94881 1.22516 0.94228 0.90201 0.93226 1.85973 1.64641 1.53509 1.18441 1.18561 0.93503 0.93481 0.82623 1.21479 1.05018 1.02518 0.94608 1.20830 0.95250 0.96347 0.94305 1.21071 1.01824 0.97823 1.00599 1.17276 0.91961 0.88280 0.90777 1.91518 1.71089 1.62685 1.86077 1.20244 1.04862 1.02559 0.93471 1.22273 0.84961 0.92830 0.98271 0.92724 0.92663 0.92995 0.78913 0.88534 0.90489 0.76792 0.87452 0.87339 0.90494 0.90605 0.84274 0.84511 0.84590 0.83865 0.92703 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.70 55.49 0.76 -28.16 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 3 Si 1.07 26.06 25.13 -169.99 -4.27 21.79 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -6.71 6.63 56.52 0.37 -6.34 16 6 H -0.29 -6.46 6.13 56.52 0.35 -6.12 16 7 C -0.31 -8.57 11.08 -15.06 -0.17 -8.73 16 8 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 9 N -0.62 -14.63 3.47 -184.61 -0.64 -15.27 16 10 C 0.08 1.57 5.12 -8.39 -0.04 1.52 16 11 C 0.06 1.03 1.74 -89.98 -0.16 0.87 16 12 O -0.55 -7.39 13.56 -35.23 -0.48 -7.86 16 13 C 0.12 1.86 5.33 -4.04 -0.02 1.84 16 14 N -0.73 -8.34 5.32 -60.30 -0.32 -8.66 16 15 C 0.52 6.21 7.83 -10.99 -0.09 6.13 16 16 O -0.54 -8.56 15.98 5.56 0.09 -8.47 16 17 C -0.14 -1.13 6.07 -27.88 -0.17 -1.30 16 18 C 0.07 0.66 4.03 37.16 0.15 0.81 16 19 O -0.31 -2.98 10.14 -19.43 -0.20 -3.17 16 20 C 0.16 1.55 6.69 -39.22 -0.26 1.29 16 21 C -0.22 -1.84 9.04 -39.42 -0.36 -2.20 16 22 C -0.05 -0.36 10.04 -39.62 -0.40 -0.75 16 23 C -0.19 -1.48 10.02 -39.49 -0.40 -1.87 16 24 C 0.14 1.22 7.30 -39.44 -0.29 0.93 16 25 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 26 C -0.19 -1.74 9.97 -39.37 -0.39 -2.13 16 27 C 0.14 2.76 8.10 -8.52 -0.07 2.69 16 28 H 0.26 8.06 8.73 -40.82 -0.36 7.71 16 29 H 0.06 1.11 7.71 -51.93 -0.40 0.71 16 30 H 0.05 1.05 4.65 -51.93 -0.24 0.80 16 31 H 0.36 3.22 7.50 45.56 0.34 3.57 16 32 H 0.10 1.82 7.94 -51.93 -0.41 1.41 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 3.25 7.24 -40.82 -0.30 2.96 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.74 7.61 -51.93 -0.39 0.35 16 38 H 0.08 0.67 7.63 -51.93 -0.40 0.27 16 39 H 0.14 1.08 6.30 -52.49 -0.33 0.75 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -34.79 370.49 -7.35 -42.15 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.17 Total: 4.97 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.75 Total: -1.66 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.20 Total: -52.09 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.59 Total: -19.51 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -4.27 Total: 21.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.79 -7.35 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484276074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.443 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds