Wall clock time and date at job start Tue Mar 31 2020 20:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21274 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99587 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.46756 * 180.02562 * 17 15 14 19 19 O 1.42899 * 109.47012 * 180.02562 * 18 17 15 20 20 C 1.35902 * 117.00284 * 179.97438 * 19 18 17 21 21 C 1.38780 * 120.03916 * 359.72318 * 20 19 18 22 22 C 1.38132 * 119.99017 * 179.74817 * 21 20 19 23 23 C 1.38245 * 120.08425 * 0.52540 * 22 21 20 24 24 C 1.38481 * 120.08457 * 359.75044 * 23 22 21 25 25 F 1.35096 * 119.99709 * 179.97438 * 24 23 22 26 26 C 1.38382 * 120.00371 * 359.97438 * 24 23 22 27 27 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 28 28 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 29 29 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 30 30 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 31 31 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 32 32 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 33 33 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 34 34 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 35 35 H 1.08998 * 109.47307 * 300.00221 * 17 15 14 36 36 H 1.08993 * 109.47428 * 60.00427 * 17 15 14 37 37 H 1.08998 * 109.46930 * 299.99885 * 18 17 15 38 38 H 1.08997 * 109.47740 * 59.99834 * 18 17 15 39 39 H 1.08000 * 120.00263 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.95405 * 180.27583 * 22 21 20 41 41 H 1.07994 * 119.95885 * 179.76369 * 23 22 21 42 42 H 1.07997 * 120.04412 * 180.02562 * 26 24 23 43 43 H 1.09001 * 113.46935 * 321.86111 * 27 9 7 44 44 H 1.09004 * 113.46453 * 92.23850 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0123 -0.9440 4.4398 17 6 7.4671 0.8990 4.2022 18 6 7.5284 0.8100 5.7284 19 8 8.3905 1.8329 6.2309 20 6 8.5556 1.8938 7.5784 21 6 7.8963 0.9908 8.4006 22 6 8.0689 1.0504 9.7698 23 6 8.8893 2.0155 10.3236 24 6 9.5443 2.9218 9.5067 25 9 10.3452 3.8645 10.0497 26 6 9.3784 2.8618 8.1341 27 6 4.4122 -2.2290 -0.3436 28 1 -0.4850 -0.8367 0.0748 29 1 4.6585 0.1322 -1.2473 30 1 4.2790 0.6435 0.4530 31 1 7.3158 -0.6161 0.0950 32 1 4.4664 -1.2102 2.2427 33 1 5.8529 -2.3197 2.1221 34 1 6.7868 0.3168 1.7318 35 1 8.4673 0.7654 3.7903 36 1 7.0814 1.8757 3.9101 37 1 6.5282 0.9435 6.1405 38 1 7.9143 -0.1666 6.0203 39 1 7.2520 0.2389 7.9696 40 1 7.5591 0.3446 10.4088 41 1 9.0198 2.0626 11.3946 42 1 9.8892 3.5681 7.4964 43 1 4.2424 -3.1307 0.2449 44 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484276074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:34 Heat of formation + Delta-G solvation = -102.094949 kcal Electronic energy + Delta-G solvation = -28158.599194 eV Core-core repulsion = 23799.227845 eV Total energy + Delta-G solvation = -4359.371349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.98443 -41.54797 -41.13380 -40.29162 -38.31334 -36.88325 -35.39385 -34.44546 -33.37056 -31.72538 -30.70831 -30.16107 -28.01762 -27.20404 -25.46721 -23.95447 -23.62119 -22.81168 -21.59815 -20.90092 -19.80009 -19.55014 -18.80563 -17.93202 -17.69512 -17.53472 -17.36154 -17.10516 -16.96571 -16.70310 -16.43985 -16.27299 -15.88951 -15.58073 -15.35511 -15.11942 -14.85632 -14.73889 -14.50209 -14.06131 -13.84735 -13.69516 -13.57333 -13.41944 -13.19188 -12.79743 -12.71611 -12.68014 -12.52009 -12.11226 -11.98849 -11.81112 -11.78858 -11.39500 -11.13030 -11.04033 -10.62116 -10.24884 -9.94769 -9.36747 -9.27407 -8.69826 -5.53065 0.07059 0.24384 1.33393 1.45536 1.50602 1.58388 1.64600 2.31103 2.51492 2.54634 2.75187 3.05915 3.21250 3.30116 3.31966 3.54451 3.66698 3.75012 3.92169 3.93166 3.96580 4.08890 4.21707 4.23195 4.37665 4.42266 4.44950 4.59924 4.63801 4.69377 4.72872 4.75046 4.79023 4.96513 5.04995 5.06486 5.12630 5.18621 5.21992 5.32082 5.66892 5.90330 6.22598 6.37264 6.64525 6.73113 7.11653 7.26255 8.18326 8.85728 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.002050 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.841046 B =13654.964877 C =14255.473576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.086 4.086 3 Si 1.109 2.891 4 H -0.306 1.306 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.289 4.289 8 H 0.052 0.948 9 N -0.651 5.651 10 C 0.072 3.928 11 C 0.106 3.894 12 O -0.539 6.539 13 C 0.133 3.867 14 N -0.715 5.715 15 C 0.520 3.480 16 O -0.582 6.582 17 C -0.129 4.129 18 C 0.073 3.927 19 O -0.315 6.315 20 C 0.148 3.852 21 C -0.224 4.224 22 C -0.048 4.048 23 C -0.192 4.192 24 C 0.122 3.878 25 F -0.141 7.141 26 C -0.200 4.200 27 C 0.133 3.867 28 H 0.247 0.753 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.391 0.609 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.417 0.583 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.059 0.941 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.585 4.893 15.593 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.278 4.278 3 Si 0.934 3.066 4 H -0.235 1.235 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.416 4.416 8 H 0.070 0.930 9 N -0.381 5.381 10 C -0.053 4.053 11 C 0.063 3.937 12 O -0.346 6.346 13 C 0.009 3.991 14 N -0.369 5.369 15 C 0.307 3.693 16 O -0.462 6.462 17 C -0.168 4.168 18 C -0.002 4.002 19 O -0.229 6.229 20 C 0.102 3.898 21 C -0.243 4.243 22 C -0.066 4.066 23 C -0.211 4.211 24 C 0.103 3.897 25 F -0.120 7.120 26 C -0.220 4.220 27 C 0.007 3.993 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.242 0.758 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.166 0.834 43 H 0.077 0.923 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.623 5.656 15.548 29.665 hybrid contribution -0.384 -1.376 0.037 1.429 sum 24.239 4.280 15.585 29.133 Atomic orbital electron populations 1.71026 1.06684 1.28740 1.54888 1.27155 0.96506 1.04777 0.99340 0.83280 0.73478 0.71667 0.78148 1.23467 1.19675 1.18010 1.19918 0.80486 0.94550 1.46683 0.92976 1.45659 1.01477 1.05080 1.85900 1.23676 0.87614 0.94267 0.99770 1.22884 0.82700 0.97538 0.90605 1.86589 1.22134 1.67034 1.58840 1.21249 0.94762 0.92135 0.90983 1.45707 1.48634 1.34891 1.07657 1.20816 0.81467 0.85119 0.81849 1.90741 1.51732 1.46164 1.57534 1.21428 1.02339 0.99147 0.93934 1.22485 0.93585 0.90122 0.94013 1.85941 1.64735 1.53648 1.18583 1.18717 0.94210 0.94104 0.82773 1.21652 1.04966 1.02440 0.95261 1.21149 0.94856 0.96487 0.94134 1.21353 1.01042 0.97141 1.01578 1.17475 0.92491 0.88737 0.91039 1.91500 1.71355 1.63005 1.86126 1.20358 1.05038 1.02762 0.93793 1.22485 0.84689 0.93048 0.99120 0.94412 0.91945 0.92785 0.75850 0.92521 0.89918 0.74458 0.84205 0.85516 0.91722 0.90766 0.83986 0.81994 0.82644 0.83351 0.92321 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.55 13.70 21.65 0.30 -62.25 16 2 C -0.09 -5.11 5.50 84.86 0.47 -4.65 16 3 Si 1.11 51.91 25.13 68.60 1.72 53.64 16 4 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 5 H -0.27 -11.42 6.63 99.48 0.66 -10.76 16 6 H -0.26 -10.54 6.13 99.48 0.61 -9.93 16 7 C -0.29 -16.63 11.08 84.03 0.93 -15.70 16 8 H 0.05 3.25 8.05 -2.91 -0.02 3.23 16 9 N -0.65 -30.32 3.47 -738.47 -2.56 -32.88 16 10 C 0.07 2.64 5.12 83.26 0.43 3.07 16 11 C 0.11 3.08 1.74 -10.38 -0.02 3.06 16 12 O -0.54 -12.01 13.56 -148.98 -2.02 -14.03 16 13 C 0.13 3.75 5.33 86.38 0.46 4.21 16 14 N -0.71 -13.98 5.32 -463.07 -2.46 -16.45 16 15 C 0.52 11.07 7.83 87.66 0.69 11.76 16 16 O -0.58 -17.99 15.98 -3.01 -0.05 -18.04 16 17 C -0.13 -1.63 6.07 29.85 0.18 -1.45 16 18 C 0.07 1.19 4.03 71.98 0.29 1.48 16 19 O -0.32 -5.48 10.14 -92.45 -0.94 -6.41 16 20 C 0.15 2.63 6.69 22.50 0.15 2.78 16 21 C -0.22 -3.54 9.04 22.37 0.20 -3.34 16 22 C -0.05 -0.61 10.04 22.25 0.22 -0.39 16 23 C -0.19 -2.60 10.02 22.33 0.22 -2.37 16 24 C 0.12 2.05 7.30 22.36 0.16 2.22 16 25 F -0.14 -2.56 17.27 44.97 0.78 -1.78 16 26 C -0.20 -3.46 9.97 22.41 0.22 -3.23 16 27 C 0.13 4.89 8.10 83.17 0.67 5.56 16 28 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 29 H 0.06 2.26 7.71 -2.39 -0.02 2.24 16 30 H 0.05 1.99 4.65 -2.39 -0.01 1.97 16 31 H 0.39 4.62 7.50 -74.06 -0.56 4.07 16 32 H 0.06 2.10 7.94 -2.39 -0.02 2.08 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.42 4.78 7.24 -92.71 -0.67 4.11 16 35 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.20 7.61 -2.39 -0.02 1.18 16 38 H 0.07 1.21 7.63 -2.39 -0.02 1.20 16 39 H 0.14 2.09 6.30 -2.91 -0.02 2.08 16 40 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -79.06 370.49 -0.31 -79.37 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.35 Total: 15.82 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.28 Total: 3.02 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.73 Total: -111.58 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -3.00 Total: -38.48 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 1.72 Total: 53.64 kcal Total: -79.06 -0.31 -79.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484276074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.729 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds