Wall clock time and date at job start Tue Mar 31 2020 20:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99752 * 2 1 4 4 H 1.48503 * 109.47006 * 240.00253 * 3 2 1 5 5 H 1.48504 * 109.47418 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46882 * 120.00454 * 3 2 1 7 7 C 1.38812 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99208 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.47122 * 125.76809 * 0.04474 * 9 7 2 11 11 C 1.54569 * 107.25517 * 177.36138 * 10 9 7 12 12 C 1.54424 * 102.44975 * 338.33326 * 11 10 9 13 13 H 1.08999 * 110.71747 * 279.43827 * 12 11 10 14 14 C 1.48210 * 125.76697 * 179.97438 * 9 7 2 15 15 H 1.08996 * 111.53318 * 326.18443 * 14 9 7 16 16 C 1.53012 * 107.91608 * 88.83649 * 14 9 7 17 17 C 1.52738 * 110.80475 * 168.50703 * 16 14 9 18 18 C 1.54489 * 107.45911 * 294.83160 * 17 16 14 19 19 N 1.45110 * 111.60808 * 156.57687 * 12 11 10 20 20 C 1.34774 * 119.57859 * 111.32606 * 19 12 11 21 21 O 1.21278 * 119.99970 * 359.97438 * 20 19 12 22 22 C 1.50703 * 120.00212 * 179.97438 * 20 19 12 23 23 C 1.53002 * 109.47292 * 179.97438 * 22 20 19 24 24 F 1.39897 * 109.46937 * 59.99823 * 23 22 20 25 25 F 1.39905 * 109.47051 * 300.00103 * 23 22 20 26 26 C 1.52997 * 109.47143 * 180.02562 * 23 22 20 27 27 F 1.39905 * 109.47157 * 299.99947 * 26 23 22 28 28 F 1.39900 * 109.47010 * 180.02562 * 26 23 22 29 29 H 0.97001 * 119.99893 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.88598 * 296.77182 * 10 9 7 31 31 H 1.08997 * 109.88455 * 57.79609 * 10 9 7 32 32 H 1.09000 * 110.80821 * 220.09317 * 11 10 9 33 33 H 1.08994 * 110.81026 * 96.57003 * 11 10 9 34 34 H 1.09004 * 109.20480 * 288.84390 * 16 14 9 35 35 H 1.08996 * 109.21316 * 48.15711 * 16 14 9 36 36 H 1.08997 * 109.64086 * 55.90825 * 17 16 14 37 37 H 1.08993 * 109.64331 * 176.33085 * 17 16 14 38 38 H 1.09002 * 111.48088 * 300.10731 * 18 17 16 39 39 H 1.09002 * 109.09011 * 178.59147 * 18 17 16 40 40 H 1.09004 * 109.47113 * 59.99741 * 22 20 19 41 41 H 1.09002 * 109.47152 * 299.99660 * 22 20 19 42 42 H 1.09004 * 109.47261 * 60.00137 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1382 -2.5359 -0.0009 11 6 -0.4461 -4.0491 -0.0687 12 6 0.8584 -4.6282 -0.6582 13 1 0.8815 -4.5026 -1.7407 14 6 1.9339 -3.7395 -0.0016 15 1 2.8659 -3.7583 -0.5666 16 6 2.1552 -4.1573 1.4537 17 6 2.5125 -5.6395 1.5443 18 6 1.2827 -6.4428 1.0655 19 7 1.0226 -6.0294 -0.3182 20 6 0.9300 -6.9638 -1.2850 21 8 0.7104 -6.6315 -2.4305 22 6 1.0995 -8.4216 -0.9426 23 6 0.9482 -9.2642 -2.2107 24 9 1.9233 -8.8871 -3.1403 25 9 -0.3226 -9.0585 -2.7585 26 6 1.1196 -10.7443 -1.8631 27 9 2.3902 -10.9505 -1.3150 28 9 0.9818 -11.5147 -3.0227 29 1 -0.4850 0.8401 0.0004 30 1 -0.5537 -2.1137 0.9139 31 1 -0.5617 -2.0298 -0.8684 32 1 -1.2899 -4.2432 -0.7308 33 1 -0.6331 -4.4512 0.9269 34 1 2.9674 -3.5661 1.8769 35 1 1.2440 -3.9725 2.0224 36 1 3.3849 -5.8447 0.9240 37 1 2.7293 -5.9015 2.5798 38 1 0.4079 -6.2392 1.6829 39 1 1.5181 -7.5067 1.0957 40 1 0.3395 -8.7156 -0.2187 41 1 2.0895 -8.5818 -0.5155 42 1 0.3596 -11.0378 -1.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484464790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:47 Heat of formation + Delta-G solvation = -199.298502 kcal Electronic energy + Delta-G solvation = -31181.940779 eV Core-core repulsion = 26276.497628 eV Total energy + Delta-G solvation = -4905.443152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.15214 -48.88769 -47.79306 -47.25707 -40.48090 -38.12072 -35.39063 -33.25997 -32.48220 -32.12154 -29.24628 -28.54329 -27.73164 -24.72008 -24.34706 -22.87669 -22.08431 -20.55530 -20.01137 -18.89973 -18.77170 -18.24012 -17.91877 -17.06722 -17.01420 -16.93763 -16.43257 -15.45483 -15.38291 -14.79960 -14.78385 -14.51756 -14.34200 -14.14534 -14.03744 -13.94592 -13.73677 -13.65835 -13.51886 -13.24842 -13.12880 -12.74594 -12.48845 -12.42839 -12.12915 -11.96337 -11.43877 -11.24714 -11.09362 -11.04560 -10.82560 -10.68553 -10.56612 -10.19103 -10.13586 -9.75574 -9.67657 -9.63745 -8.65377 -8.40453 -6.90096 -5.73736 -3.08279 2.20106 2.49675 2.88759 3.22538 3.33339 3.39489 3.44047 3.45036 3.52082 3.59135 4.21014 4.28554 4.40439 4.46269 4.72761 4.83369 4.92243 5.03954 5.16086 5.30147 5.40106 5.49851 5.57004 5.60232 5.80011 5.89761 6.02304 6.13572 6.24144 6.29008 6.44648 6.50936 6.64727 6.87461 6.99116 7.40801 7.51686 7.57568 7.79296 8.10246 8.21321 9.17619 9.77269 10.42647 11.37390 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.025981 B = 0.002817 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.468389 B = 9935.906386 C =10241.414240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.130 3.870 13 H 0.103 0.897 14 C 0.157 3.843 15 H 0.059 0.941 16 C -0.132 4.132 17 C -0.132 4.132 18 C 0.103 3.897 19 N -0.588 5.588 20 C 0.512 3.488 21 O -0.522 6.522 22 C -0.193 4.193 23 C 0.271 3.729 24 F -0.169 7.169 25 F -0.167 7.167 26 C 0.236 3.764 27 F -0.181 7.181 28 F -0.182 7.182 29 H 0.253 0.747 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 -23.015 3.782 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.026 3.974 13 H 0.121 0.879 14 C 0.048 3.952 15 H 0.077 0.923 16 C -0.172 4.172 17 C -0.171 4.171 18 C -0.020 4.020 19 N -0.320 5.320 20 C 0.298 3.702 21 O -0.397 6.397 22 C -0.234 4.234 23 C 0.233 3.767 24 F -0.149 7.149 25 F -0.148 7.148 26 C 0.181 3.819 27 F -0.162 7.162 28 F -0.163 7.163 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.718 -22.535 3.101 22.759 hybrid contribution 0.499 0.866 0.019 0.999 sum 1.217 -21.669 3.120 21.927 Atomic orbital electron populations 1.69945 1.04877 1.25237 1.56768 1.24799 0.95712 0.97645 1.02091 0.86194 0.78454 0.83165 0.77897 1.21121 1.21605 1.21203 1.18984 0.90400 0.82181 1.44129 0.90468 1.44681 1.01460 0.99243 1.86759 1.21183 0.84302 0.87670 1.01329 1.23114 0.96352 0.99853 0.99694 1.21852 0.96782 0.77449 1.01309 0.87883 1.21316 0.94520 0.86181 0.93191 0.92326 1.22125 1.01962 0.93186 0.99919 1.22108 0.96826 0.97236 1.00954 1.22152 0.98701 0.98721 0.82427 1.47569 1.69877 1.06885 1.07655 1.19822 0.78067 0.86537 0.85778 1.90810 1.47760 1.81657 1.19506 1.22889 1.08328 0.95170 0.96987 1.21571 0.74697 0.93150 0.87283 1.93142 1.61769 1.92357 1.67654 1.93135 1.38926 1.95537 1.87169 1.22857 0.85172 0.88964 0.84922 1.93068 1.42400 1.95330 1.85382 1.93082 1.95803 1.76388 1.51040 0.93646 0.94030 0.92937 0.91960 0.92245 0.92075 0.91820 0.91383 0.91301 0.90455 0.90447 0.85215 0.84874 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.33 55.49 0.57 -26.10 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.21 10.29 -15.06 -0.16 -6.36 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.60 -14.63 2.95 -162.21 -0.48 -15.11 16 10 C 0.18 4.26 5.24 -2.88 -0.02 4.25 16 11 C -0.15 -2.79 6.10 -25.16 -0.15 -2.94 16 12 C 0.13 2.34 3.10 -67.30 -0.21 2.13 16 13 H 0.10 2.16 6.96 -51.93 -0.36 1.80 16 14 C 0.16 3.07 3.54 -66.36 -0.23 2.84 16 15 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.13 -2.14 5.12 -26.86 -0.14 -2.28 16 17 C -0.13 -1.50 6.17 -26.08 -0.16 -1.66 16 18 C 0.10 1.02 6.08 -3.13 -0.02 1.00 16 19 N -0.59 -8.14 2.70 -164.45 -0.44 -8.59 16 20 C 0.51 7.19 7.42 -10.99 -0.08 7.11 16 21 O -0.52 -9.78 14.16 5.56 0.08 -9.71 16 22 C -0.19 -1.63 3.49 -27.88 -0.10 -1.73 16 23 C 0.27 2.82 1.40 -26.73 -0.04 2.79 16 24 F -0.17 -2.38 16.10 2.25 0.04 -2.35 16 25 F -0.17 -2.11 16.12 2.25 0.04 -2.07 16 26 C 0.24 1.66 4.83 37.16 0.18 1.84 16 27 F -0.18 -1.39 16.80 2.25 0.04 -1.36 16 28 F -0.18 -1.76 17.30 2.25 0.04 -1.72 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 31 H 0.05 1.41 7.29 -51.93 -0.38 1.03 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.99 6.82 -51.93 -0.35 0.63 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.10 7.20 -51.93 -0.37 0.73 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.74 7.51 -51.93 -0.39 0.35 16 39 H 0.08 0.47 5.81 -51.93 -0.30 0.17 16 40 H 0.13 0.57 7.92 -51.93 -0.41 0.16 16 41 H 0.13 0.82 7.28 -51.93 -0.38 0.44 16 42 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -33.98 344.98 -6.59 -40.57 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.43 Total: -2.36 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.22 Total: 6.71 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.35 Total: -49.80 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.15 Total: -7.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.98 -6.59 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484464790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.726 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds