Wall clock time and date at job start Tue Mar 31 2020 20:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99752 * 2 1 4 4 H 1.48503 * 109.47006 * 240.00253 * 3 2 1 5 5 H 1.48504 * 109.47418 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46882 * 120.00454 * 3 2 1 7 7 C 1.38812 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99208 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.47122 * 125.76809 * 0.04474 * 9 7 2 11 11 C 1.54569 * 107.25517 * 177.36138 * 10 9 7 12 12 C 1.54424 * 102.44975 * 338.33326 * 11 10 9 13 13 H 1.08999 * 110.71747 * 279.43827 * 12 11 10 14 14 C 1.48210 * 125.76697 * 179.97438 * 9 7 2 15 15 H 1.08996 * 111.53318 * 326.18443 * 14 9 7 16 16 C 1.53012 * 107.91608 * 88.83649 * 14 9 7 17 17 C 1.52738 * 110.80475 * 168.50703 * 16 14 9 18 18 C 1.54489 * 107.45911 * 294.83160 * 17 16 14 19 19 N 1.45110 * 111.60808 * 156.57687 * 12 11 10 20 20 C 1.34774 * 119.57859 * 111.32606 * 19 12 11 21 21 O 1.21278 * 119.99970 * 359.97438 * 20 19 12 22 22 C 1.50703 * 120.00212 * 179.97438 * 20 19 12 23 23 C 1.53002 * 109.47292 * 179.97438 * 22 20 19 24 24 F 1.39897 * 109.46937 * 59.99823 * 23 22 20 25 25 F 1.39905 * 109.47051 * 300.00103 * 23 22 20 26 26 C 1.52997 * 109.47143 * 180.02562 * 23 22 20 27 27 F 1.39905 * 109.47157 * 299.99947 * 26 23 22 28 28 F 1.39900 * 109.47010 * 180.02562 * 26 23 22 29 29 H 0.97001 * 119.99893 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.88598 * 296.77182 * 10 9 7 31 31 H 1.08997 * 109.88455 * 57.79609 * 10 9 7 32 32 H 1.09000 * 110.80821 * 220.09317 * 11 10 9 33 33 H 1.08994 * 110.81026 * 96.57003 * 11 10 9 34 34 H 1.09004 * 109.20480 * 288.84390 * 16 14 9 35 35 H 1.08996 * 109.21316 * 48.15711 * 16 14 9 36 36 H 1.08997 * 109.64086 * 55.90825 * 17 16 14 37 37 H 1.08993 * 109.64331 * 176.33085 * 17 16 14 38 38 H 1.09002 * 111.48088 * 300.10731 * 18 17 16 39 39 H 1.09002 * 109.09011 * 178.59147 * 18 17 16 40 40 H 1.09004 * 109.47113 * 59.99741 * 22 20 19 41 41 H 1.09002 * 109.47152 * 299.99660 * 22 20 19 42 42 H 1.09004 * 109.47261 * 60.00137 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1382 -2.5359 -0.0009 11 6 -0.4461 -4.0491 -0.0687 12 6 0.8584 -4.6282 -0.6582 13 1 0.8815 -4.5026 -1.7407 14 6 1.9339 -3.7395 -0.0016 15 1 2.8659 -3.7583 -0.5666 16 6 2.1552 -4.1573 1.4537 17 6 2.5125 -5.6395 1.5443 18 6 1.2827 -6.4428 1.0655 19 7 1.0226 -6.0294 -0.3182 20 6 0.9300 -6.9638 -1.2850 21 8 0.7104 -6.6315 -2.4305 22 6 1.0995 -8.4216 -0.9426 23 6 0.9482 -9.2642 -2.2107 24 9 1.9233 -8.8871 -3.1403 25 9 -0.3226 -9.0585 -2.7585 26 6 1.1196 -10.7443 -1.8631 27 9 2.3902 -10.9505 -1.3150 28 9 0.9818 -11.5147 -3.0227 29 1 -0.4850 0.8401 0.0004 30 1 -0.5537 -2.1137 0.9139 31 1 -0.5617 -2.0298 -0.8684 32 1 -1.2899 -4.2432 -0.7308 33 1 -0.6331 -4.4512 0.9269 34 1 2.9674 -3.5661 1.8769 35 1 1.2440 -3.9725 2.0224 36 1 3.3849 -5.8447 0.9240 37 1 2.7293 -5.9015 2.5798 38 1 0.4079 -6.2392 1.6829 39 1 1.5181 -7.5067 1.0957 40 1 0.3395 -8.7156 -0.2187 41 1 2.0895 -8.5818 -0.5155 42 1 0.3596 -11.0378 -1.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484464790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:46 Heat of formation + Delta-G solvation = -221.597013 kcal Electronic energy + Delta-G solvation = -31182.907715 eV Core-core repulsion = 26276.497628 eV Total energy + Delta-G solvation = -4906.410088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.82345 -49.59107 -48.47314 -48.02877 -41.70043 -39.51452 -36.80725 -34.45185 -33.73873 -33.57318 -30.94468 -29.89396 -28.65877 -26.36028 -25.77166 -23.71870 -23.21959 -22.03377 -21.50922 -19.75728 -19.47036 -19.33003 -18.80588 -18.59571 -18.01138 -17.72676 -17.29922 -16.80716 -16.57593 -16.44001 -16.01893 -15.51971 -15.15077 -15.10590 -15.07703 -14.98480 -14.88048 -14.61269 -14.55144 -14.33901 -14.10901 -13.88493 -13.81273 -13.59565 -13.25952 -13.19156 -13.04278 -12.81237 -12.60778 -12.36002 -12.27991 -12.12412 -11.99035 -11.78946 -11.65362 -11.53206 -11.19247 -10.91897 -10.72135 -9.64746 -8.91244 -7.85923 -5.21879 1.43480 1.47034 1.48414 1.52093 1.54006 1.95526 2.48127 2.54144 2.83035 2.88848 3.04402 3.31602 3.45624 3.57401 3.75526 3.80483 3.86428 3.92976 4.05866 4.12054 4.15429 4.28398 4.33900 4.38174 4.56700 4.61270 4.66707 4.82103 4.85264 4.97557 5.10193 5.20688 5.37556 5.39975 5.54114 5.59894 5.65168 5.72853 6.16777 6.35485 7.05338 7.07893 7.73852 8.38883 9.23796 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.025981 B = 0.002817 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.468389 B = 9935.906386 C =10241.414240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.619 5.619 10 C 0.191 3.809 11 C -0.131 4.131 12 C 0.146 3.854 13 H 0.063 0.937 14 C 0.151 3.849 15 H 0.043 0.957 16 C -0.121 4.121 17 C -0.124 4.124 18 C 0.096 3.904 19 N -0.587 5.587 20 C 0.504 3.496 21 O -0.581 6.581 22 C -0.181 4.181 23 C 0.249 3.751 24 F -0.201 7.201 25 F -0.186 7.186 26 C 0.244 3.756 27 F -0.183 7.183 28 F -0.202 7.202 29 H 0.247 0.753 30 H 0.013 0.987 31 H 0.007 0.993 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.186 0.814 41 H 0.167 0.833 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -26.546 6.496 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.065 3.935 11 C -0.170 4.170 12 C 0.040 3.960 13 H 0.081 0.919 14 C 0.044 3.956 15 H 0.061 0.939 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.024 4.024 19 N -0.318 5.318 20 C 0.293 3.707 21 O -0.461 6.461 22 C -0.221 4.221 23 C 0.211 3.789 24 F -0.182 7.182 25 F -0.167 7.167 26 C 0.190 3.810 27 F -0.164 7.164 28 F -0.183 7.183 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.203 0.797 41 H 0.185 0.815 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.527 -26.133 5.854 26.824 hybrid contribution 0.306 1.965 -0.875 2.173 sum 1.833 -24.168 4.978 24.744 Atomic orbital electron populations 1.70172 1.06254 1.25311 1.58265 1.25626 0.96586 1.00919 1.02685 0.85171 0.77151 0.78933 0.78191 1.20721 1.22082 1.19964 1.19354 0.90860 0.83590 1.42950 0.90202 1.44948 1.02048 1.00633 1.86802 1.20860 0.83957 0.90890 0.97778 1.22901 0.96716 0.95910 1.01459 1.21225 0.95553 0.80510 0.98724 0.91921 1.21535 0.94013 0.84355 0.95721 0.93928 1.21916 1.00961 0.97142 0.96111 1.22094 0.97642 0.93021 1.03457 1.22603 0.98506 1.01672 0.79612 1.47593 1.69679 1.04688 1.09791 1.20850 0.76349 0.88835 0.84714 1.90797 1.50160 1.82984 1.22134 1.23043 1.12113 0.89826 0.97068 1.22373 0.73207 0.96135 0.87179 1.93075 1.62982 1.92977 1.69155 1.93091 1.40105 1.95896 1.87621 1.23287 0.86403 0.86085 0.85230 1.93066 1.43077 1.95082 1.85157 1.93044 1.95923 1.76596 1.52722 0.94426 0.96904 0.97512 0.91709 0.89249 0.93754 0.92760 0.91192 0.87658 0.89033 0.84745 0.79666 0.81512 0.77678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.97 10.33 21.65 0.22 -57.74 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.47 10.29 84.03 0.86 -12.61 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -31.79 2.95 -667.10 -1.97 -33.76 16 10 C 0.19 9.55 5.24 86.79 0.46 10.00 16 11 C -0.13 -4.87 6.10 31.61 0.19 -4.68 16 12 C 0.15 5.31 3.10 46.14 0.14 5.45 16 13 H 0.06 2.79 6.96 -2.39 -0.02 2.77 16 14 C 0.15 6.03 3.54 45.07 0.16 6.19 16 15 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 16 C -0.12 -3.77 5.12 30.51 0.16 -3.62 16 17 C -0.12 -2.23 6.17 31.01 0.19 -2.04 16 18 C 0.10 1.35 6.08 86.84 0.53 1.88 16 19 N -0.59 -14.64 2.70 -792.59 -2.14 -16.78 16 20 C 0.50 12.93 7.42 87.66 0.65 13.59 16 21 O -0.58 -22.09 14.16 -3.02 -0.04 -22.13 16 22 C -0.18 -2.12 3.49 29.85 0.10 -2.01 16 23 C 0.25 4.46 1.40 30.59 0.04 4.50 16 24 F -0.20 -5.57 16.10 44.97 0.72 -4.84 16 25 F -0.19 -4.43 16.12 44.97 0.73 -3.70 16 26 C 0.24 2.38 4.83 71.98 0.35 2.72 16 27 F -0.18 -2.00 16.80 44.97 0.76 -1.24 16 28 F -0.20 -3.44 17.30 44.97 0.78 -2.66 16 29 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 30 H 0.01 0.70 7.60 -2.39 -0.02 0.68 16 31 H 0.01 0.38 7.29 -2.39 -0.02 0.37 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.80 6.82 -2.39 -0.02 2.78 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.79 7.20 -2.39 -0.02 1.77 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.14 7.51 -2.39 -0.02 1.12 16 39 H 0.13 0.46 5.81 -2.39 -0.01 0.45 16 40 H 0.19 0.12 7.92 -2.38 -0.02 0.10 16 41 H 0.17 0.89 7.28 -2.39 -0.02 0.87 16 42 H 0.21 -0.51 8.14 -2.38 -0.02 -0.53 16 Total: -1.00 -85.41 344.98 6.44 -78.97 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: 1.06 Total: -0.63 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 4.30 Total: 16.08 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.89 Total: -108.28 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.04 Total: -22.13 kcal Atomic # 9 Polarization: -15.43 SS G_CDS: 2.98 Total: -12.45 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -85.41 6.44 -78.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484464790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.629 kcal (2) G-P(sol) polarization free energy of solvation -85.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds