Wall clock time and date at job start Tue Mar 31 2020 20:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00018 * 2 1 4 4 H 1.48499 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47342 * 299.99800 * 3 2 1 6 6 H 1.48500 * 109.47093 * 59.99759 * 3 2 1 7 7 C 1.38809 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00064 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.48374 * 126.55937 * 0.02942 * 9 7 2 11 11 C 1.55471 * 106.97602 * 174.45690 * 10 9 7 12 12 C 1.53439 * 101.66866 * 337.39781 * 11 10 9 13 13 H 1.09001 * 111.74784 * 281.77333 * 12 11 10 14 14 C 1.45023 * 126.56120 * 179.97438 * 9 7 2 15 15 H 1.09002 * 108.70743 * 95.91438 * 14 9 7 16 16 C 1.51084 * 119.18876 * 331.23417 * 14 9 7 17 17 C 1.53874 * 107.34466 * 176.11964 * 16 14 9 18 18 C 1.52254 * 111.58495 * 56.76589 * 17 16 14 19 19 N 1.45720 * 116.37706 * 152.73715 * 12 11 10 20 20 C 1.34777 * 122.23208 * 9.88797 * 19 12 11 21 21 O 1.21288 * 119.99593 * 0.02562 * 20 19 12 22 22 C 1.50697 * 120.00369 * 180.02562 * 20 19 12 23 23 C 1.52997 * 109.47466 * 180.02562 * 22 20 19 24 24 F 1.39905 * 109.47157 * 59.99756 * 23 22 20 25 25 F 1.39900 * 109.47010 * 300.00147 * 23 22 20 26 26 C 1.52997 * 109.47232 * 179.97438 * 23 22 20 27 27 F 1.39905 * 109.47057 * 59.99929 * 26 23 22 28 28 F 1.39898 * 109.47062 * 180.02562 * 26 23 22 29 29 H 0.96998 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.96368 * 293.83350 * 10 9 7 31 31 H 1.09007 * 109.96389 * 55.03956 * 10 9 7 32 32 H 1.09005 * 110.98743 * 219.30791 * 11 10 9 33 33 H 1.08999 * 110.98957 * 95.49525 * 11 10 9 34 34 H 1.08995 * 109.88141 * 295.57706 * 16 14 9 35 35 H 1.09000 * 109.88093 * 56.58720 * 16 14 9 36 36 H 1.08994 * 109.06924 * 177.45350 * 17 16 14 37 37 H 1.09000 * 109.06493 * 296.46877 * 17 16 14 38 38 H 1.09003 * 109.07164 * 191.22493 * 18 17 16 39 39 H 1.08998 * 108.97861 * 72.20070 * 18 17 16 40 40 H 1.09002 * 109.47120 * 59.99760 * 22 20 19 41 41 H 1.09001 * 109.46613 * 300.00111 * 22 20 19 42 42 H 1.09001 * 109.47375 * 299.99867 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1485 -2.5576 0.0017 11 6 -0.4304 -4.0799 -0.1406 12 6 0.8712 -4.5779 -0.7827 13 1 0.9036 -4.3609 -1.8504 14 6 1.9024 -3.7187 0.0017 15 1 1.9446 -4.0813 1.0288 16 6 3.2558 -3.9351 -0.6339 17 6 3.6450 -5.4045 -0.3953 18 6 2.5938 -6.3588 -0.9451 19 7 1.2343 -5.9642 -0.5186 20 6 0.3889 -6.8274 0.0786 21 8 -0.7165 -6.4588 0.4152 22 6 0.8170 -8.2506 0.3280 23 6 -0.3197 -9.0128 1.0120 24 9 -1.4499 -9.0034 0.1873 25 9 -0.6266 -8.3977 2.2305 26 6 0.1147 -10.4578 1.2646 27 9 1.2450 -10.4676 2.0890 28 9 -0.9249 -11.1549 1.8895 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5656 -2.1879 0.9385 31 1 -0.5853 -2.0176 -0.8385 32 1 -1.2826 -4.2596 -0.7960 33 1 -0.5859 -4.5410 0.8348 34 1 3.1988 -3.7358 -1.7040 35 1 3.9915 -3.2760 -0.1730 36 1 4.5993 -5.6038 -0.8828 37 1 3.7501 -5.5755 0.6761 38 1 2.8035 -7.3658 -0.5844 39 1 2.6438 -6.3522 -2.0339 40 1 1.6978 -8.2579 0.9701 41 1 1.0556 -8.7299 -0.6215 42 1 0.3534 -10.9368 0.3150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484464794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:55 Heat of formation + Delta-G solvation = -192.838052 kcal Electronic energy + Delta-G solvation = -31385.333507 eV Core-core repulsion = 26480.170501 eV Total energy + Delta-G solvation = -4905.163005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.12024 -48.85469 -47.76557 -47.22028 -40.44916 -37.92578 -35.55115 -33.22345 -32.72563 -32.04289 -29.21998 -28.40175 -27.77602 -24.65603 -24.44632 -22.75018 -21.58821 -20.93342 -19.81609 -19.26524 -18.79893 -18.38731 -17.88963 -17.03607 -16.83778 -16.51580 -16.07093 -15.56832 -15.34642 -14.79576 -14.75036 -14.49422 -14.33743 -14.16431 -14.10199 -14.00858 -13.67910 -13.62648 -13.57323 -13.19850 -13.16073 -12.53976 -12.47998 -12.41512 -12.27416 -11.89767 -11.61674 -11.26556 -11.09693 -10.88465 -10.76408 -10.59355 -10.51134 -10.09662 -10.05150 -9.87893 -9.63853 -9.16397 -8.60473 -8.34869 -6.84364 -5.70971 -3.05673 2.23109 2.56914 2.90086 3.26287 3.35804 3.39448 3.44306 3.47331 3.54909 3.61248 4.23460 4.31246 4.43704 4.48015 4.69137 4.83333 4.94188 5.01234 5.15686 5.30918 5.37895 5.51275 5.57851 5.70567 5.81260 5.92274 6.01838 6.18583 6.23970 6.33036 6.50657 6.67451 6.71315 6.86345 7.12601 7.49978 7.58558 7.66042 7.83278 8.18688 8.24276 9.18161 9.82064 10.49906 11.41000 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.003031 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.253568 B = 9234.396636 C = 9841.865383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.130 4.130 12 C 0.117 3.883 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.117 4.117 17 C -0.131 4.131 18 C 0.109 3.891 19 N -0.596 5.596 20 C 0.519 3.481 21 O -0.511 6.511 22 C -0.195 4.195 23 C 0.272 3.728 24 F -0.167 7.167 25 F -0.168 7.168 26 C 0.236 3.764 27 F -0.181 7.181 28 F -0.182 7.182 29 H 0.252 0.748 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -22.960 -2.679 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.169 4.169 12 C 0.013 3.987 13 H 0.100 0.900 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.169 4.169 18 C -0.014 4.014 19 N -0.329 5.329 20 C 0.305 3.695 21 O -0.386 6.386 22 C -0.235 4.235 23 C 0.234 3.766 24 F -0.148 7.148 25 F -0.148 7.148 26 C 0.181 3.819 27 F -0.162 7.162 28 F -0.163 7.163 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.895 -22.514 -2.430 23.167 hybrid contribution 0.469 0.867 0.132 0.995 sum 5.364 -21.647 -2.298 22.419 Atomic orbital electron populations 1.69960 1.04892 1.24990 1.56716 1.24816 0.95678 0.97663 1.02199 0.86070 0.78660 0.83909 0.77249 1.20540 1.21773 1.21767 1.19025 0.90342 0.82178 1.44010 0.90296 1.44089 1.01810 0.99298 1.86497 1.21752 0.83594 0.88726 1.01186 1.22974 0.94484 0.97958 1.01437 1.22474 0.98987 0.77937 0.99339 0.89994 1.20752 0.91330 0.87297 0.95690 0.96565 1.21445 0.98646 0.94082 1.01356 1.21827 0.97611 0.95825 1.01681 1.21667 0.81597 0.98257 0.99878 1.47943 1.14155 1.11643 1.59151 1.19668 0.85287 0.85866 0.78727 1.90824 1.20356 1.77286 1.50118 1.22894 0.99115 0.96675 1.04833 1.21545 0.85166 0.91523 0.78384 1.93132 1.53191 1.96839 1.71628 1.93152 1.93814 1.84093 1.43765 1.22854 0.75277 0.91434 0.92374 1.93069 1.50896 1.96907 1.75312 1.93081 1.58375 1.79992 1.84872 0.93737 0.94209 0.92494 0.91989 0.89948 0.91714 0.91342 0.90676 0.91743 0.90547 0.91164 0.85083 0.85405 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.46 55.49 0.58 -26.57 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.23 -6.21 9.94 -15.06 -0.15 -6.36 16 8 H 0.08 2.06 7.30 -52.49 -0.38 1.68 16 9 N -0.59 -15.00 3.35 -163.30 -0.55 -15.54 16 10 C 0.17 4.33 5.47 -1.70 -0.01 4.32 16 11 C -0.13 -2.74 5.01 -25.19 -0.13 -2.87 16 12 C 0.12 2.12 3.33 -66.82 -0.22 1.90 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 14 C 0.16 3.20 2.58 -68.38 -0.18 3.03 16 15 H 0.02 0.37 8.03 -51.93 -0.42 -0.05 16 16 C -0.12 -1.87 5.45 -27.24 -0.15 -2.02 16 17 C -0.13 -1.45 5.90 -26.66 -0.16 -1.61 16 18 C 0.11 1.06 6.29 -3.68 -0.02 1.03 16 19 N -0.60 -8.41 2.92 -164.29 -0.48 -8.89 16 20 C 0.52 7.45 7.46 -10.99 -0.08 7.37 16 21 O -0.51 -9.57 11.67 5.55 0.06 -9.50 16 22 C -0.19 -1.71 3.59 -27.89 -0.10 -1.81 16 23 C 0.27 2.92 1.40 -26.73 -0.04 2.88 16 24 F -0.17 -2.13 16.12 2.25 0.04 -2.10 16 25 F -0.17 -2.46 16.11 2.25 0.04 -2.43 16 26 C 0.24 1.73 4.83 37.16 0.18 1.91 16 27 F -0.18 -1.47 16.80 2.25 0.04 -1.43 16 28 F -0.18 -1.82 17.30 2.25 0.04 -1.78 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.04 1.11 7.81 -51.92 -0.41 0.70 16 31 H 0.06 1.56 7.18 -51.92 -0.37 1.19 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.84 6.21 -51.93 -0.32 1.52 16 34 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 35 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.47 6.18 -51.93 -0.32 0.15 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.13 0.88 7.41 -51.93 -0.38 0.50 16 41 H 0.13 0.58 8.02 -51.93 -0.42 0.17 16 42 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -34.67 343.47 -6.74 -41.41 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.52 Total: -2.78 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.15 Total: 7.49 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.45 Total: -51.00 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.06 Total: -9.50 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.15 Total: -7.74 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.67 -6.74 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484464794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.428 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds