Wall clock time and date at job start Tue Mar 31 2020 20:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00018 * 2 1 4 4 H 1.48499 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47342 * 299.99800 * 3 2 1 6 6 H 1.48500 * 109.47093 * 59.99759 * 3 2 1 7 7 C 1.38809 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00064 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.48374 * 126.55937 * 0.02942 * 9 7 2 11 11 C 1.55471 * 106.97602 * 174.45690 * 10 9 7 12 12 C 1.53439 * 101.66866 * 337.39781 * 11 10 9 13 13 H 1.09001 * 111.74784 * 281.77333 * 12 11 10 14 14 C 1.45023 * 126.56120 * 179.97438 * 9 7 2 15 15 H 1.09002 * 108.70743 * 95.91438 * 14 9 7 16 16 C 1.51084 * 119.18876 * 331.23417 * 14 9 7 17 17 C 1.53874 * 107.34466 * 176.11964 * 16 14 9 18 18 C 1.52254 * 111.58495 * 56.76589 * 17 16 14 19 19 N 1.45720 * 116.37706 * 152.73715 * 12 11 10 20 20 C 1.34777 * 122.23208 * 9.88797 * 19 12 11 21 21 O 1.21288 * 119.99593 * 0.02562 * 20 19 12 22 22 C 1.50697 * 120.00369 * 180.02562 * 20 19 12 23 23 C 1.52997 * 109.47466 * 180.02562 * 22 20 19 24 24 F 1.39905 * 109.47157 * 59.99756 * 23 22 20 25 25 F 1.39900 * 109.47010 * 300.00147 * 23 22 20 26 26 C 1.52997 * 109.47232 * 179.97438 * 23 22 20 27 27 F 1.39905 * 109.47057 * 59.99929 * 26 23 22 28 28 F 1.39898 * 109.47062 * 180.02562 * 26 23 22 29 29 H 0.96998 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.96368 * 293.83350 * 10 9 7 31 31 H 1.09007 * 109.96389 * 55.03956 * 10 9 7 32 32 H 1.09005 * 110.98743 * 219.30791 * 11 10 9 33 33 H 1.08999 * 110.98957 * 95.49525 * 11 10 9 34 34 H 1.08995 * 109.88141 * 295.57706 * 16 14 9 35 35 H 1.09000 * 109.88093 * 56.58720 * 16 14 9 36 36 H 1.08994 * 109.06924 * 177.45350 * 17 16 14 37 37 H 1.09000 * 109.06493 * 296.46877 * 17 16 14 38 38 H 1.09003 * 109.07164 * 191.22493 * 18 17 16 39 39 H 1.08998 * 108.97861 * 72.20070 * 18 17 16 40 40 H 1.09002 * 109.47120 * 59.99760 * 22 20 19 41 41 H 1.09001 * 109.46613 * 300.00111 * 22 20 19 42 42 H 1.09001 * 109.47375 * 299.99867 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1485 -2.5576 0.0017 11 6 -0.4304 -4.0799 -0.1406 12 6 0.8712 -4.5779 -0.7827 13 1 0.9036 -4.3609 -1.8504 14 6 1.9024 -3.7187 0.0017 15 1 1.9446 -4.0813 1.0288 16 6 3.2558 -3.9351 -0.6339 17 6 3.6450 -5.4045 -0.3953 18 6 2.5938 -6.3588 -0.9451 19 7 1.2343 -5.9642 -0.5186 20 6 0.3889 -6.8274 0.0786 21 8 -0.7165 -6.4588 0.4152 22 6 0.8170 -8.2506 0.3280 23 6 -0.3197 -9.0128 1.0120 24 9 -1.4499 -9.0034 0.1873 25 9 -0.6266 -8.3977 2.2305 26 6 0.1147 -10.4578 1.2646 27 9 1.2450 -10.4676 2.0890 28 9 -0.9249 -11.1549 1.8895 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5656 -2.1879 0.9385 31 1 -0.5853 -2.0176 -0.8385 32 1 -1.2826 -4.2596 -0.7960 33 1 -0.5859 -4.5410 0.8348 34 1 3.1988 -3.7358 -1.7040 35 1 3.9915 -3.2760 -0.1730 36 1 4.5993 -5.6038 -0.8828 37 1 3.7501 -5.5755 0.6761 38 1 2.8035 -7.3658 -0.5844 39 1 2.6438 -6.3522 -2.0339 40 1 1.6978 -8.2579 0.9701 41 1 1.0556 -8.7299 -0.6215 42 1 0.3534 -10.9368 0.3150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484464794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:54 Heat of formation + Delta-G solvation = -216.152764 kcal Electronic energy + Delta-G solvation = -31386.344509 eV Core-core repulsion = 26480.170501 eV Total energy + Delta-G solvation = -4906.174007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.82384 -49.59135 -48.47640 -48.03034 -41.70831 -39.32618 -36.97453 -34.49421 -33.99362 -33.52276 -30.92974 -29.77805 -28.68614 -26.40534 -25.82588 -23.61054 -22.85037 -22.37414 -21.49807 -20.35531 -19.47754 -19.25770 -18.64320 -18.48843 -17.72961 -17.48713 -17.14367 -17.05633 -16.50759 -16.48616 -15.81259 -15.53064 -15.39796 -15.27784 -15.10857 -15.06204 -14.84448 -14.62274 -14.54472 -14.35469 -14.18083 -13.96619 -13.78173 -13.41215 -13.25298 -13.17341 -13.13723 -12.89521 -12.75948 -12.28529 -12.08162 -11.95778 -11.83655 -11.75879 -11.71930 -11.56032 -11.42438 -10.80330 -10.46098 -9.58331 -8.93265 -7.85814 -5.23205 1.44620 1.46260 1.51825 1.56002 1.56737 1.96658 2.48976 2.55619 2.82705 2.88277 3.03901 3.32998 3.33766 3.57043 3.75446 3.80065 3.90429 4.00430 4.04022 4.11859 4.23084 4.30128 4.35180 4.36831 4.55819 4.57649 4.71012 4.81226 4.91682 5.03593 5.08991 5.18507 5.30169 5.43922 5.47674 5.56657 5.60127 5.70186 6.16170 6.44874 7.03269 7.11806 7.73847 8.43907 9.26222 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.003031 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.253568 B = 9234.396636 C = 9841.865383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.091 0.909 9 N -0.613 5.613 10 C 0.182 3.818 11 C -0.113 4.113 12 C 0.134 3.866 13 H 0.085 0.915 14 C 0.152 3.848 15 H -0.004 1.004 16 C -0.114 4.114 17 C -0.122 4.122 18 C 0.100 3.900 19 N -0.596 5.596 20 C 0.507 3.493 21 O -0.568 6.568 22 C -0.181 4.181 23 C 0.250 3.750 24 F -0.185 7.185 25 F -0.202 7.202 26 C 0.243 3.757 27 F -0.184 7.184 28 F -0.202 7.202 29 H 0.246 0.754 30 H -0.005 1.005 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.161 0.839 41 H 0.186 0.814 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -26.309 -4.276 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.360 4.360 8 H 0.109 0.891 9 N -0.337 5.337 10 C 0.057 3.943 11 C -0.151 4.151 12 C 0.028 3.972 13 H 0.103 0.897 14 C 0.043 3.957 15 H 0.013 0.987 16 C -0.152 4.152 17 C -0.161 4.161 18 C -0.020 4.020 19 N -0.329 5.329 20 C 0.295 3.705 21 O -0.447 6.447 22 C -0.220 4.220 23 C 0.212 3.788 24 F -0.166 7.166 25 F -0.183 7.183 26 C 0.189 3.811 27 F -0.165 7.165 28 F -0.183 7.183 29 H 0.055 0.945 30 H 0.013 0.987 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.179 0.821 41 H 0.203 0.797 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 8.547 -25.926 -4.034 27.595 hybrid contribution -0.661 1.900 0.681 2.124 sum 7.885 -24.026 -3.354 25.508 Atomic orbital electron populations 1.70200 1.06608 1.25198 1.58511 1.25731 0.96541 1.01320 1.02817 0.84977 0.78403 0.79261 0.76509 1.18345 1.21876 1.22458 1.19466 0.91059 0.83109 1.42410 0.89141 1.44361 1.01949 1.01091 1.86343 1.21434 0.84105 0.91274 0.97525 1.22662 0.96580 0.94776 1.01110 1.21980 0.95721 0.80894 0.98583 0.89739 1.20962 0.94558 0.84842 0.95298 0.98671 1.21443 0.95177 0.97986 1.00604 1.21832 0.99902 0.92013 1.02337 1.22127 0.78133 1.00249 1.01492 1.48043 1.16241 1.09488 1.59107 1.20686 0.84487 0.88031 0.77259 1.90807 1.22983 1.78764 1.52099 1.23005 0.98776 0.92176 1.08075 1.22348 0.85178 0.94070 0.77204 1.93090 1.54442 1.97082 1.71960 1.93080 1.94157 1.85103 1.45952 1.23298 0.74305 0.89104 0.94344 1.93064 1.50817 1.96738 1.75876 1.93043 1.59619 1.80104 1.85520 0.94522 0.98673 0.95585 0.91961 0.91461 0.91612 0.92813 0.86661 0.91929 0.85250 0.88850 0.82147 0.79690 0.77625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.82 10.46 21.65 0.23 -59.59 16 2 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 3 Si 0.98 46.32 29.55 68.60 2.03 48.34 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 7 C -0.23 -13.01 9.94 84.03 0.84 -12.17 16 8 H 0.09 4.74 7.30 -2.91 -0.02 4.72 16 9 N -0.61 -32.40 3.35 -670.57 -2.25 -34.65 16 10 C 0.18 9.90 5.47 86.87 0.48 10.37 16 11 C -0.11 -5.03 5.01 31.59 0.16 -4.87 16 12 C 0.13 4.84 3.33 46.13 0.15 5.00 16 13 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 14 C 0.15 6.16 2.58 45.49 0.12 6.28 16 15 H 0.00 -0.18 8.03 -2.39 -0.02 -0.20 16 16 C -0.11 -3.43 5.45 30.26 0.16 -3.26 16 17 C -0.12 -2.13 5.90 30.64 0.18 -1.95 16 18 C 0.10 1.36 6.29 85.87 0.54 1.90 16 19 N -0.60 -15.16 2.92 -792.08 -2.31 -17.47 16 20 C 0.51 13.41 7.46 87.66 0.65 14.07 16 21 O -0.57 -21.55 11.67 -3.05 -0.04 -21.59 16 22 C -0.18 -2.29 3.59 29.85 0.11 -2.19 16 23 C 0.25 4.71 1.40 30.59 0.04 4.75 16 24 F -0.18 -4.46 16.12 44.97 0.73 -3.74 16 25 F -0.20 -5.92 16.11 44.97 0.72 -5.19 16 26 C 0.24 2.59 4.83 71.98 0.35 2.94 16 27 F -0.18 -2.24 16.80 44.97 0.76 -1.49 16 28 F -0.20 -3.61 17.30 44.97 0.78 -2.83 16 29 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 30 H -0.01 -0.31 7.81 -2.38 -0.02 -0.33 16 31 H 0.03 1.54 7.18 -2.38 -0.02 1.53 16 32 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.07 3.22 6.21 -2.39 -0.01 3.20 16 34 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 35 H 0.05 1.76 7.70 -2.39 -0.02 1.74 16 36 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.13 0.49 6.18 -2.39 -0.01 0.47 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.16 1.16 7.41 -2.39 -0.02 1.14 16 41 H 0.19 0.21 8.02 -2.39 -0.02 0.20 16 42 H 0.21 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: -1.00 -86.91 343.47 5.94 -80.97 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.05 Total: 0.06 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 4.24 Total: 17.17 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -4.33 Total: -111.71 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.04 Total: -21.59 kcal Atomic # 9 Polarization: -16.23 SS G_CDS: 2.98 Total: -13.25 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -86.91 5.94 -80.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484464794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.181 kcal (2) G-P(sol) polarization free energy of solvation -86.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds