Wall clock time and date at job start Tue Mar 31 2020 20:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00425 * 2 1 4 4 H 1.48506 * 109.46604 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47295 * 29.99439 * 3 2 1 6 6 H 1.48501 * 109.47077 * 149.99651 * 3 2 1 7 7 C 1.38819 * 119.99327 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99449 * 169.27540 * 7 2 1 9 9 N 1.36933 * 120.00002 * 349.27417 * 7 2 1 10 10 C 1.47144 * 120.98527 * 328.29245 * 9 7 2 11 11 C 1.53294 * 108.38592 * 230.55808 * 10 9 7 12 12 O 1.42960 * 109.22420 * 307.69789 * 11 10 9 13 13 C 1.42964 * 114.16541 * 62.57702 * 12 11 10 14 14 C 1.47160 * 120.97936 * 148.31804 * 9 7 2 15 15 H 1.09001 * 109.68002 * 249.20593 * 14 9 7 16 16 C 1.52999 * 109.67851 * 9.71711 * 14 9 7 17 17 N 1.46499 * 109.47406 * 299.33893 * 16 14 9 18 18 C 1.34780 * 120.00226 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99532 * 0.02562 * 18 17 16 20 20 C 1.50693 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.46492 * 109.47397 * 180.02562 * 20 18 17 22 22 C 1.36173 * 119.85401 * 269.72791 * 21 20 18 23 23 C 1.35543 * 119.25852 * 179.76803 * 22 21 20 24 24 C 1.40739 * 118.99773 * 0.50021 * 23 22 21 25 25 O 1.35158 * 120.16684 * 179.72206 * 24 23 22 26 26 N 1.32425 * 119.67214 * 359.74484 * 24 23 22 27 27 C 1.33274 * 120.72703 * 0.02562 * 26 24 23 28 28 O 1.21979 * 119.47560 * 180.02562 * 27 26 24 29 29 H 0.97006 * 119.99364 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.68353 * 350.28181 * 10 9 7 31 31 H 1.09000 * 109.68304 * 110.83709 * 10 9 7 32 32 H 1.09005 * 109.51162 * 67.62296 * 11 10 9 33 33 H 1.09001 * 109.51169 * 187.72230 * 11 10 9 34 34 H 1.09005 * 109.51106 * 177.49431 * 13 12 11 35 35 H 1.09004 * 109.50759 * 57.34793 * 13 12 11 36 36 H 1.09009 * 109.46960 * 179.34108 * 16 14 9 37 37 H 1.09002 * 109.47058 * 59.34425 * 16 14 9 38 38 H 0.97000 * 119.99986 * 0.02562 * 17 16 14 39 39 H 1.09000 * 109.47711 * 300.00770 * 20 18 17 40 40 H 1.09009 * 109.46811 * 60.00133 * 20 18 17 41 41 H 1.07998 * 120.36835 * 359.97438 * 22 21 20 42 42 H 1.07994 * 120.50148 * 180.24441 * 23 22 21 43 43 H 0.96696 * 114.00434 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0760 -1.2106 -0.1735 9 7 1.3433 -2.3776 0.2218 10 6 0.1600 -2.4244 1.0952 11 6 0.3534 -3.5560 2.1111 12 8 0.6774 -4.7624 1.4159 13 6 1.9032 -4.7041 0.6825 14 6 1.7892 -3.6314 -0.4066 15 1 1.0630 -3.9446 -1.1567 16 6 3.1532 -3.4202 -1.0667 17 7 3.0412 -2.3874 -2.0997 18 6 4.1248 -2.0328 -2.8184 19 8 5.1926 -2.5690 -2.6101 20 6 4.0095 -0.9709 -3.8813 21 7 5.3152 -0.7694 -4.5141 22 6 6.1770 0.1568 -4.0103 23 6 7.3839 0.3299 -4.6024 24 6 7.7083 -0.4471 -5.7301 25 8 8.9030 -0.2899 -6.3424 26 7 6.8371 -1.3326 -6.1888 27 6 5.6555 -1.4962 -5.5944 28 8 4.8704 -2.3188 -6.0358 29 1 -0.4849 0.8402 -0.0004 30 1 0.0528 -1.4748 1.6194 31 1 -0.7306 -2.6166 0.4968 32 1 1.1647 -3.2990 2.7922 33 1 -0.5668 -3.6975 2.6780 34 1 2.0978 -5.6723 0.2210 35 1 2.7202 -4.4513 1.3584 36 1 3.4856 -4.3538 -1.5208 37 1 3.8760 -3.1047 -0.3142 38 1 2.1871 -1.9589 -2.2664 39 1 3.2865 -1.2865 -4.6335 40 1 3.6773 -0.0371 -3.4275 41 1 5.9032 0.7444 -3.1465 42 1 8.0844 1.0560 -4.2171 43 1 9.0322 -0.8676 -7.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484598437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:13 Heat of formation + Delta-G solvation = -68.630078 kcal Electronic energy + Delta-G solvation = -30228.055164 eV Core-core repulsion = 25890.054922 eV Total energy + Delta-G solvation = -4338.000242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87800 -39.54148 -38.79028 -38.27250 -36.72221 -35.48264 -34.55612 -33.71691 -31.82371 -31.34872 -30.57649 -28.49562 -27.25587 -25.44177 -24.78537 -23.57179 -23.34412 -21.81817 -20.30171 -19.87802 -19.75327 -18.25338 -17.70363 -17.35441 -16.62071 -16.03164 -15.88579 -15.77184 -15.66215 -14.99590 -14.84821 -14.68011 -14.59820 -14.32379 -14.12216 -13.97127 -13.89352 -13.44512 -13.35262 -13.03995 -12.78652 -12.43154 -11.99925 -11.86165 -11.62697 -11.20767 -11.02657 -10.87925 -10.84474 -10.51374 -10.43293 -10.39836 -10.17574 -9.92618 -9.77513 -9.67405 -9.08951 -8.82657 -8.65536 -8.46710 -6.84708 -6.04100 -3.54727 0.55368 1.59893 2.23139 2.85538 3.01749 3.06737 3.21871 3.22583 3.45978 3.82613 4.12810 4.18445 4.40551 4.45799 4.68658 4.91938 4.96249 5.07857 5.13138 5.19030 5.21618 5.33601 5.49062 5.64512 5.77081 5.92054 5.95566 6.00670 6.07705 6.12889 6.25128 6.27205 6.44362 6.65332 6.86359 6.88979 6.97605 7.39433 7.54369 7.70747 7.79011 7.94374 8.10728 8.16058 8.54136 8.91496 9.52203 10.13225 11.02167 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.003448 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.243939 B = 8118.995283 C = 9362.535903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.009 3.991 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.043 0.957 16 C 0.137 3.863 17 N -0.685 5.685 18 C 0.498 3.502 19 O -0.552 6.552 20 C 0.073 3.927 21 N -0.506 5.506 22 C 0.218 3.782 23 C -0.292 4.292 24 C 0.458 3.542 25 O -0.450 6.450 26 N -0.616 5.616 27 C 0.662 3.338 28 O -0.531 6.531 29 H 0.257 0.743 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.418 0.582 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.183 0.817 42 H 0.164 0.836 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 2.330 -4.845 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.191 4.191 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.318 5.318 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.061 0.939 16 C 0.013 3.987 17 N -0.337 5.337 18 C 0.281 3.719 19 O -0.431 6.431 20 C -0.054 4.054 21 N -0.221 5.221 22 C 0.081 3.919 23 C -0.318 4.318 24 C 0.256 3.744 25 O -0.245 6.245 26 N -0.373 5.373 27 C 0.363 3.637 28 O -0.406 6.406 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.256 0.744 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.200 0.800 42 H 0.182 0.818 43 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 9.492 1.220 -5.252 10.916 hybrid contribution 0.050 1.585 0.276 1.610 sum 9.542 2.805 -4.976 11.121 Atomic orbital electron populations 1.69974 1.05193 1.25795 1.52967 1.25195 0.95314 0.98181 1.00428 0.86427 0.79464 0.83895 0.77800 1.21240 1.21322 1.20345 1.19198 0.91189 0.83356 1.44994 0.91064 1.44082 1.32628 1.03048 1.51997 1.21405 0.88992 0.96711 0.90992 1.23350 0.99228 0.86597 0.95166 1.87812 1.40742 1.36233 1.66222 1.22858 0.86820 0.98709 0.93904 1.21442 0.93654 0.89366 0.93781 0.93897 1.21198 0.97763 0.89914 0.89795 1.45901 1.12343 1.39937 1.35513 1.20374 0.84939 0.83993 0.82569 1.90703 1.28015 1.55424 1.68952 1.21894 0.84430 1.01621 0.97419 1.46022 1.16817 1.32441 1.26830 1.22410 0.87930 0.86890 0.94625 1.20547 0.99480 1.10379 1.01435 1.20403 0.83420 0.84679 0.85880 1.84977 1.30398 1.62377 1.46701 1.69616 1.05223 1.26732 1.35740 1.17234 0.85646 0.82060 0.78723 1.91002 1.49784 1.35098 1.64685 0.93295 0.89072 0.95165 0.94123 0.90192 0.89841 0.93495 0.92117 0.91330 0.74376 0.84989 0.85491 0.80012 0.81833 0.72810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.49 11.17 55.49 0.62 -21.87 16 2 C 0.01 0.21 5.06 -17.43 -0.09 0.12 16 3 Si 0.89 18.36 29.57 -169.99 -5.03 13.34 16 4 H -0.29 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.26 -5.82 7.04 -15.06 -0.11 -5.93 16 8 H 0.07 1.61 5.84 -52.48 -0.31 1.31 16 9 N -0.59 -12.76 3.03 -164.30 -0.50 -13.26 16 10 C 0.14 3.11 5.37 -3.54 -0.02 3.09 16 11 C 0.03 0.64 6.98 37.31 0.26 0.90 16 12 O -0.39 -7.38 10.74 -35.23 -0.38 -7.76 16 13 C 0.06 0.96 6.29 37.31 0.23 1.19 16 14 C 0.12 2.31 3.21 -67.42 -0.22 2.10 16 15 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 16 C 0.14 2.41 4.45 -4.04 -0.02 2.39 16 17 N -0.69 -11.82 3.79 -60.29 -0.23 -12.05 16 18 C 0.50 8.52 7.90 -10.99 -0.09 8.44 16 19 O -0.55 -11.20 16.43 5.55 0.09 -11.11 16 20 C 0.07 1.00 5.83 -5.20 -0.03 0.97 16 21 N -0.51 -7.15 2.08 -123.16 -0.26 -7.41 16 22 C 0.22 2.28 10.40 -16.59 -0.17 2.11 16 23 C -0.29 -2.81 10.03 -39.60 -0.40 -3.21 16 24 C 0.46 5.27 7.91 -16.35 -0.13 5.14 16 25 O -0.45 -3.77 13.55 -17.17 -0.23 -4.00 16 26 N -0.62 -9.46 10.40 -16.72 -0.17 -9.64 16 27 C 0.66 11.52 8.34 -88.43 -0.74 10.78 16 28 O -0.53 -11.13 16.72 4.94 0.08 -11.04 16 29 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 30 H 0.09 2.16 6.37 -51.93 -0.33 1.83 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 37 H 0.07 1.29 7.56 -51.93 -0.39 0.90 16 38 H 0.42 7.37 7.32 -40.82 -0.30 7.07 16 39 H 0.13 1.78 7.38 -51.93 -0.38 1.39 16 40 H 0.13 1.37 8.03 -51.92 -0.42 0.95 16 41 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.42 2.02 8.98 45.56 0.41 2.43 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -33.77 360.49 -6.73 -40.50 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.66 Total: 10.77 kcal Atomic # 6 Polarization: 29.58 SS G_CDS: -1.51 Total: 28.08 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.54 Total: -64.22 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.44 Total: -33.91 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.77 -6.73 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484598437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.126 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds