Wall clock time and date at job start Tue Mar 31 2020 20:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00425 * 2 1 4 4 H 1.48506 * 109.46604 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47295 * 29.99439 * 3 2 1 6 6 H 1.48501 * 109.47077 * 149.99651 * 3 2 1 7 7 C 1.38819 * 119.99327 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99449 * 169.27540 * 7 2 1 9 9 N 1.36933 * 120.00002 * 349.27417 * 7 2 1 10 10 C 1.47144 * 120.98527 * 328.29245 * 9 7 2 11 11 C 1.53294 * 108.38592 * 230.55808 * 10 9 7 12 12 O 1.42960 * 109.22420 * 307.69789 * 11 10 9 13 13 C 1.42964 * 114.16541 * 62.57702 * 12 11 10 14 14 C 1.47160 * 120.97936 * 148.31804 * 9 7 2 15 15 H 1.09001 * 109.68002 * 249.20593 * 14 9 7 16 16 C 1.52999 * 109.67851 * 9.71711 * 14 9 7 17 17 N 1.46499 * 109.47406 * 299.33893 * 16 14 9 18 18 C 1.34780 * 120.00226 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99532 * 0.02562 * 18 17 16 20 20 C 1.50693 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.46492 * 109.47397 * 180.02562 * 20 18 17 22 22 C 1.36173 * 119.85401 * 269.72791 * 21 20 18 23 23 C 1.35543 * 119.25852 * 179.76803 * 22 21 20 24 24 C 1.40739 * 118.99773 * 0.50021 * 23 22 21 25 25 O 1.35158 * 120.16684 * 179.72206 * 24 23 22 26 26 N 1.32425 * 119.67214 * 359.74484 * 24 23 22 27 27 C 1.33274 * 120.72703 * 0.02562 * 26 24 23 28 28 O 1.21979 * 119.47560 * 180.02562 * 27 26 24 29 29 H 0.97006 * 119.99364 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.68353 * 350.28181 * 10 9 7 31 31 H 1.09000 * 109.68304 * 110.83709 * 10 9 7 32 32 H 1.09005 * 109.51162 * 67.62296 * 11 10 9 33 33 H 1.09001 * 109.51169 * 187.72230 * 11 10 9 34 34 H 1.09005 * 109.51106 * 177.49431 * 13 12 11 35 35 H 1.09004 * 109.50759 * 57.34793 * 13 12 11 36 36 H 1.09009 * 109.46960 * 179.34108 * 16 14 9 37 37 H 1.09002 * 109.47058 * 59.34425 * 16 14 9 38 38 H 0.97000 * 119.99986 * 0.02562 * 17 16 14 39 39 H 1.09000 * 109.47711 * 300.00770 * 20 18 17 40 40 H 1.09009 * 109.46811 * 60.00133 * 20 18 17 41 41 H 1.07998 * 120.36835 * 359.97438 * 22 21 20 42 42 H 1.07994 * 120.50148 * 180.24441 * 23 22 21 43 43 H 0.96696 * 114.00434 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0760 -1.2106 -0.1735 9 7 1.3433 -2.3776 0.2218 10 6 0.1600 -2.4244 1.0952 11 6 0.3534 -3.5560 2.1111 12 8 0.6774 -4.7624 1.4159 13 6 1.9032 -4.7041 0.6825 14 6 1.7892 -3.6314 -0.4066 15 1 1.0630 -3.9446 -1.1567 16 6 3.1532 -3.4202 -1.0667 17 7 3.0412 -2.3874 -2.0997 18 6 4.1248 -2.0328 -2.8184 19 8 5.1926 -2.5690 -2.6101 20 6 4.0095 -0.9709 -3.8813 21 7 5.3152 -0.7694 -4.5141 22 6 6.1770 0.1568 -4.0103 23 6 7.3839 0.3299 -4.6024 24 6 7.7083 -0.4471 -5.7301 25 8 8.9030 -0.2899 -6.3424 26 7 6.8371 -1.3326 -6.1888 27 6 5.6555 -1.4962 -5.5944 28 8 4.8704 -2.3188 -6.0358 29 1 -0.4849 0.8402 -0.0004 30 1 0.0528 -1.4748 1.6194 31 1 -0.7306 -2.6166 0.4968 32 1 1.1647 -3.2990 2.7922 33 1 -0.5668 -3.6975 2.6780 34 1 2.0978 -5.6723 0.2210 35 1 2.7202 -4.4513 1.3584 36 1 3.4856 -4.3538 -1.5208 37 1 3.8760 -3.1047 -0.3142 38 1 2.1871 -1.9589 -2.2664 39 1 3.2865 -1.2865 -4.6335 40 1 3.6773 -0.0371 -3.4275 41 1 5.9032 0.7444 -3.1465 42 1 8.0844 1.0560 -4.2171 43 1 9.0322 -0.8676 -7.1069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484598437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:12 Heat of formation + Delta-G solvation = -98.417391 kcal Electronic energy + Delta-G solvation = -30229.346839 eV Core-core repulsion = 25890.054922 eV Total energy + Delta-G solvation = -4339.291916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.91967 -40.87129 -39.99179 -39.50793 -37.85914 -36.97196 -35.59215 -35.30133 -33.35763 -32.41987 -32.11916 -29.68261 -28.87730 -26.75950 -25.77473 -25.21733 -24.42761 -23.32628 -21.65915 -21.32028 -20.78317 -19.19998 -19.03743 -18.45553 -18.12241 -17.56976 -17.21122 -16.93138 -16.86647 -16.31499 -16.20185 -16.15190 -15.62505 -15.57043 -15.49422 -15.23119 -14.90312 -14.85505 -14.57782 -14.38228 -14.22490 -13.74779 -13.29225 -13.08658 -13.05084 -12.80797 -12.62678 -12.46890 -12.11138 -12.04757 -12.01399 -11.84185 -11.46237 -11.29056 -11.01056 -11.00199 -10.63431 -10.52238 -9.94691 -9.69836 -8.59041 -7.80832 -5.34600 -0.33757 0.64677 1.20582 1.45946 1.53524 1.57234 1.62686 2.20405 2.24751 2.51625 2.71550 3.02893 3.25196 3.35304 3.44011 3.57281 3.73299 3.79195 4.01726 4.09610 4.17319 4.20390 4.32717 4.40723 4.46931 4.53422 4.59869 4.62283 4.65639 4.73496 4.99782 5.10702 5.15113 5.29466 5.31846 5.47755 5.63235 5.72786 6.15212 6.30265 6.39925 6.54884 6.65653 7.00596 7.12989 7.17739 7.79614 8.38344 9.23903 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.003448 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.243939 B = 8118.995283 C = 9362.535903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.036 4.036 3 Si 0.949 3.051 4 H -0.260 1.260 5 H -0.307 1.307 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.605 5.605 10 C 0.151 3.849 11 C 0.045 3.955 12 O -0.399 6.399 13 C 0.057 3.943 14 C 0.127 3.873 15 H 0.034 0.966 16 C 0.145 3.855 17 N -0.686 5.686 18 C 0.498 3.502 19 O -0.585 6.585 20 C 0.078 3.922 21 N -0.510 5.510 22 C 0.208 3.792 23 C -0.279 4.279 24 C 0.459 3.541 25 O -0.437 6.437 26 N -0.651 5.651 27 C 0.651 3.349 28 O -0.590 6.590 29 H 0.249 0.751 30 H 0.066 0.934 31 H 0.004 0.996 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.130 0.870 40 H 0.163 0.837 41 H 0.223 0.777 42 H 0.203 0.797 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.396 3.493 -4.422 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.232 4.232 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.234 1.234 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.331 5.331 10 C 0.025 3.975 11 C -0.033 4.033 12 O -0.317 6.317 13 C -0.022 4.022 14 C 0.020 3.980 15 H 0.052 0.948 16 C 0.021 3.979 17 N -0.337 5.337 18 C 0.283 3.717 19 O -0.467 6.467 20 C -0.048 4.048 21 N -0.225 5.225 22 C 0.074 3.926 23 C -0.304 4.304 24 C 0.260 3.740 25 O -0.233 6.233 26 N -0.410 5.410 27 C 0.353 3.647 28 O -0.469 6.469 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.148 0.852 40 H 0.181 0.819 41 H 0.239 0.761 42 H 0.220 0.780 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 11.574 2.412 -4.834 12.773 hybrid contribution -0.442 1.221 0.134 1.305 sum 11.132 3.633 -4.700 12.618 Atomic orbital electron populations 1.70139 1.06643 1.25785 1.54892 1.25798 0.95783 1.00871 1.00785 0.85568 0.77890 0.80050 0.78841 1.18490 1.23378 1.20141 1.19348 0.91233 0.83759 1.43533 0.90808 1.44297 1.32405 1.03900 1.52492 1.21207 0.88290 0.96783 0.91206 1.23234 1.00513 0.85354 0.94195 1.87811 1.41554 1.36022 1.66361 1.22979 0.86299 0.99566 0.93345 1.21514 0.93778 0.88607 0.94091 0.94837 1.21090 0.96662 0.90532 0.89664 1.45913 1.12410 1.39867 1.35517 1.20902 0.84074 0.84104 0.82612 1.90681 1.29153 1.56759 1.70058 1.21939 0.84661 1.01917 0.96287 1.45900 1.17441 1.32885 1.26248 1.23187 0.87606 0.86210 0.95575 1.21049 0.99635 1.09799 0.99952 1.20752 0.83372 0.83707 0.86192 1.84982 1.28669 1.62456 1.47233 1.69498 1.05504 1.28977 1.37065 1.17452 0.85838 0.81984 0.79400 1.90938 1.51483 1.37780 1.66652 0.94147 0.91538 0.97742 0.93721 0.87953 0.86919 0.93072 0.91087 0.92400 0.74587 0.85213 0.81935 0.76073 0.78002 0.71011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -47.35 11.17 21.65 0.24 -47.11 16 2 C -0.04 -1.66 5.06 84.86 0.43 -1.23 16 3 Si 0.95 36.59 29.57 68.60 2.03 38.62 16 4 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 5 H -0.31 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.25 -11.09 7.04 84.04 0.59 -10.50 16 8 H 0.07 3.24 5.84 -2.91 -0.02 3.22 16 9 N -0.60 -25.98 3.03 -673.74 -2.04 -28.02 16 10 C 0.15 6.57 5.37 86.35 0.46 7.04 16 11 C 0.04 1.61 6.98 72.08 0.50 2.11 16 12 O -0.40 -14.39 10.74 -148.98 -1.60 -15.99 16 13 C 0.06 1.83 6.29 72.08 0.45 2.29 16 14 C 0.13 4.61 3.21 44.96 0.14 4.75 16 15 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 16 C 0.14 4.95 4.45 86.38 0.38 5.34 16 17 N -0.69 -23.19 3.79 -463.04 -1.75 -24.95 16 18 C 0.50 16.57 7.90 87.65 0.69 17.27 16 19 O -0.59 -23.33 16.43 -3.06 -0.05 -23.38 16 20 C 0.08 2.03 5.83 85.63 0.50 2.53 16 21 N -0.51 -13.65 2.08 -661.79 -1.38 -15.03 16 22 C 0.21 3.64 10.40 83.40 0.87 4.51 16 23 C -0.28 -4.34 10.03 22.26 0.22 -4.12 16 24 C 0.46 9.54 7.91 85.22 0.67 10.22 16 25 O -0.44 -6.15 13.55 -84.36 -1.14 -7.29 16 26 N -0.65 -19.72 10.40 -438.81 -4.56 -24.28 16 27 C 0.65 22.74 8.34 179.58 1.50 24.23 16 28 O -0.59 -25.59 16.72 -5.25 -0.09 -25.68 16 29 H 0.25 12.57 8.31 -92.70 -0.77 11.80 16 30 H 0.07 3.22 6.37 -2.39 -0.02 3.21 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 35 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.06 2.12 7.56 -2.39 -0.02 2.10 16 38 H 0.42 14.50 7.32 -92.71 -0.68 13.82 16 39 H 0.13 3.47 7.38 -2.39 -0.02 3.46 16 40 H 0.16 2.98 8.03 -2.38 -0.02 2.96 16 41 H 0.22 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.43 3.32 8.98 -74.06 -0.66 2.65 16 Total: -1.00 -75.72 360.49 -3.19 -78.91 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.26 Total: 29.75 kcal Atomic # 6 Polarization: 57.01 SS G_CDS: 7.42 Total: 64.43 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -9.49 Total: -139.38 kcal Atomic # 8 Polarization: -69.45 SS G_CDS: -2.88 Total: -72.33 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -75.72 -3.19 -78.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484598437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.506 kcal (2) G-P(sol) polarization free energy of solvation -75.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds