Wall clock time and date at job start Tue Mar 31 2020 20:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99561 * 2 1 4 4 H 1.48504 * 109.47077 * 94.09781 * 3 2 1 5 5 H 1.48496 * 109.46673 * 214.09577 * 3 2 1 6 6 H 1.48496 * 109.47151 * 334.09661 * 3 2 1 7 7 C 1.38811 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 15.90143 * 7 2 1 9 9 N 1.36930 * 120.00362 * 195.90938 * 7 2 1 10 10 C 1.47161 * 120.98159 * 31.32273 * 9 7 2 11 11 C 1.53298 * 108.38218 * 129.44793 * 10 9 7 12 12 O 1.42955 * 109.22332 * 52.29938 * 11 10 9 13 13 C 1.42960 * 114.17324 * 297.42072 * 12 11 10 14 14 C 1.47148 * 120.98409 * 211.04844 * 9 7 2 15 15 H 1.08996 * 109.68687 * 110.83089 * 14 9 7 16 16 C 1.53007 * 109.68082 * 350.27341 * 14 9 7 17 17 N 1.46497 * 109.46627 * 60.58007 * 16 14 9 18 18 C 1.34778 * 119.99851 * 179.97438 * 17 16 14 19 19 O 1.21288 * 119.99835 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00068 * 179.97438 * 18 17 16 21 21 N 1.46510 * 109.47081 * 179.97438 * 20 18 17 22 22 C 1.36160 * 119.85341 * 269.72880 * 21 20 18 23 23 C 1.35542 * 119.25208 * 179.77351 * 22 21 20 24 24 C 1.40733 * 119.00286 * 0.49359 * 23 22 21 25 25 O 1.35160 * 120.16551 * 179.72701 * 24 23 22 26 26 N 1.32422 * 119.67197 * 359.75285 * 24 23 22 27 27 C 1.33274 * 120.72504 * 359.97438 * 26 24 23 28 28 O 1.21981 * 119.47547 * 180.02562 * 27 26 24 29 29 H 0.96999 * 120.00534 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.67995 * 249.16722 * 10 9 7 31 31 H 1.08990 * 109.67852 * 9.68485 * 10 9 7 32 32 H 1.08994 * 109.51102 * 172.22913 * 11 10 9 33 33 H 1.09005 * 109.50664 * 292.32525 * 11 10 9 34 34 H 1.08995 * 109.51643 * 182.50857 * 13 12 11 35 35 H 1.09007 * 109.50657 * 302.60577 * 13 12 11 36 36 H 1.08998 * 109.47237 * 180.58021 * 16 14 9 37 37 H 1.09001 * 109.46982 * 300.58314 * 16 14 9 38 38 H 0.97001 * 120.00285 * 359.97438 * 17 16 14 39 39 H 1.08998 * 109.47469 * 300.00263 * 20 18 17 40 40 H 1.09001 * 109.46827 * 60.00603 * 20 18 17 41 41 H 1.07993 * 120.37218 * 359.97438 * 22 21 20 42 42 H 1.08005 * 120.49763 * 180.24256 * 23 22 21 43 43 H 0.96709 * 114.00123 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5842 1.9965 1.3965 5 1 3.5016 1.4668 -0.7848 6 1 1.4069 2.6762 -0.6116 7 6 2.0104 -1.2021 0.0005 8 1 1.5014 -2.1196 -0.2553 9 7 3.3403 -1.2246 0.3256 10 6 3.9025 -0.2592 1.2835 11 6 4.7042 -1.0334 2.3360 12 8 5.6385 -1.8924 1.6780 13 6 5.0344 -2.8940 0.8560 14 6 4.2485 -2.2187 -0.2680 15 1 4.9402 -1.7234 -0.9494 16 6 3.4366 -3.2684 -1.0296 17 7 2.6801 -2.6170 -2.1018 18 6 1.8887 -3.3502 -2.9096 19 8 1.8025 -4.5492 -2.7486 20 6 1.1101 -2.6801 -4.0122 21 7 0.3337 -3.6853 -4.7423 22 6 0.8789 -4.3095 -5.8227 23 6 0.1515 -5.2409 -6.4864 24 6 -1.1534 -5.5292 -6.0452 25 8 -1.9015 -6.4498 -6.6930 26 7 -1.6448 -4.8938 -4.9924 27 6 -0.9170 -3.9840 -4.3453 28 8 -1.3922 -3.4127 -3.3780 29 1 -0.4851 0.8400 0.0004 30 1 4.5587 0.4367 0.7609 31 1 3.0952 0.2904 1.7672 32 1 5.2415 -0.3313 2.9734 33 1 4.0249 -1.6308 2.9441 34 1 5.8093 -3.5305 0.4288 35 1 4.3572 -3.4995 1.4585 36 1 4.1117 -4.0085 -1.4592 37 1 2.7460 -3.7606 -0.3449 38 1 2.7488 -1.6580 -2.2304 39 1 0.4346 -1.9405 -3.5823 40 1 1.8005 -2.1872 -4.6967 41 1 1.8808 -4.0675 -6.1451 42 1 0.5656 -5.7511 -7.3436 43 1 -2.7826 -6.5771 -6.3153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484598438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:17 Heat of formation + Delta-G solvation = -96.193210 kcal Electronic energy + Delta-G solvation = -30307.144696 eV Core-core repulsion = 25967.949228 eV Total energy + Delta-G solvation = -4339.195469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.88089 -40.92779 -40.10561 -39.50281 -37.85459 -37.05448 -35.57606 -35.35080 -33.65297 -32.75645 -32.24816 -29.72953 -29.08897 -26.75826 -25.72515 -25.22547 -24.44947 -23.66099 -21.70346 -21.43778 -20.74921 -19.17449 -19.06119 -18.42511 -18.26068 -17.68526 -17.25872 -16.95567 -16.85578 -16.70820 -16.29117 -16.04106 -15.88556 -15.59722 -15.56320 -15.29575 -15.00834 -14.80779 -14.50572 -14.40944 -14.26697 -14.02667 -13.49629 -13.40894 -13.06801 -13.00870 -12.80656 -12.34019 -12.30786 -12.04068 -12.01816 -11.56323 -11.45466 -11.34105 -11.10444 -10.96031 -10.89407 -10.51233 -9.95249 -9.65580 -8.85287 -8.09547 -5.53657 -0.27163 0.70078 1.24270 1.33393 1.42922 1.53208 1.53680 2.26049 2.28945 2.43626 2.73829 2.87839 3.03423 3.24066 3.30411 3.60286 3.75289 3.84030 3.93358 4.10456 4.13850 4.22604 4.25663 4.27469 4.39579 4.45335 4.48828 4.58574 4.62342 4.70577 4.71333 4.91141 4.93473 5.21352 5.22863 5.35419 5.50213 5.86285 6.15941 6.18588 6.21259 6.55458 6.71081 6.85251 7.07472 7.20256 7.58514 7.98996 9.07461 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.003341 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.077418 B = 8378.599488 C = 9425.160433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.024 4.024 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.250 1.250 6 H -0.319 1.319 7 C -0.241 4.241 8 H 0.056 0.944 9 N -0.620 5.620 10 C 0.083 3.917 11 C 0.052 3.948 12 O -0.388 6.388 13 C 0.055 3.945 14 C 0.130 3.870 15 H 0.069 0.931 16 C 0.142 3.858 17 N -0.685 5.685 18 C 0.499 3.501 19 O -0.588 6.588 20 C 0.080 3.920 21 N -0.510 5.510 22 C 0.215 3.785 23 C -0.283 4.283 24 C 0.453 3.547 25 O -0.439 6.439 26 N -0.658 5.658 27 C 0.644 3.356 28 O -0.594 6.594 29 H 0.259 0.741 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.043 0.957 34 H 0.128 0.872 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.031 0.969 38 H 0.415 0.585 39 H 0.105 0.895 40 H 0.188 0.812 41 H 0.241 0.759 42 H 0.208 0.792 43 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.508 -6.917 -15.322 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.220 4.220 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.174 1.174 6 H -0.248 1.248 7 C -0.370 4.370 8 H 0.074 0.926 9 N -0.347 5.347 10 C -0.041 4.041 11 C -0.026 4.026 12 O -0.306 6.306 13 C -0.024 4.024 14 C 0.025 3.975 15 H 0.086 0.914 16 C 0.018 3.982 17 N -0.335 5.335 18 C 0.284 3.716 19 O -0.470 6.470 20 C -0.046 4.046 21 N -0.224 5.224 22 C 0.081 3.919 23 C -0.308 4.308 24 C 0.255 3.745 25 O -0.235 6.235 26 N -0.418 5.418 27 C 0.346 3.654 28 O -0.472 6.472 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.061 0.939 34 H 0.146 0.854 35 H 0.059 0.941 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.252 0.748 39 H 0.123 0.877 40 H 0.205 0.795 41 H 0.257 0.743 42 H 0.225 0.775 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.904 -7.420 -14.527 19.621 hybrid contribution -1.027 1.444 0.702 1.906 sum 9.877 -5.976 -13.825 18.011 Atomic orbital electron populations 1.70009 1.07804 1.27047 1.55015 1.25954 0.95381 1.00891 0.99757 0.85988 0.78361 0.80049 0.78043 1.20515 1.17390 1.24850 1.18682 0.83893 0.92961 1.41438 0.92611 1.44533 1.05282 1.36776 1.48115 1.22163 0.96979 0.93045 0.91949 1.23025 0.92232 0.93427 0.93909 1.87840 1.33260 1.46134 1.63344 1.22958 0.97916 0.89831 0.91671 1.21565 0.91529 0.89948 0.94474 0.91370 1.21139 0.93856 0.94723 0.88496 1.45811 1.44904 1.12205 1.30571 1.20925 0.79483 0.87163 0.83994 1.90667 1.66111 1.16434 1.73789 1.21944 0.96698 0.90313 0.95609 1.45899 1.14605 1.35732 1.26197 1.23372 1.00189 0.86757 0.81562 1.21100 0.92824 1.07130 1.09730 1.20892 0.89180 0.81342 0.83133 1.84968 1.32834 1.52414 1.53274 1.69489 1.37404 1.18675 1.16204 1.17566 0.80060 0.82899 0.84916 1.91063 1.71611 1.55041 1.29512 0.93210 0.93763 0.92026 0.86555 0.93872 0.85386 0.94069 0.88808 0.95070 0.74789 0.87661 0.79462 0.74281 0.77491 0.71232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 13.97 21.65 0.30 -58.76 16 2 C -0.02 -1.31 5.30 84.86 0.45 -0.86 16 3 Si 0.95 42.88 24.27 68.60 1.67 44.54 16 4 H -0.28 -12.13 6.42 99.48 0.64 -11.50 16 5 H -0.25 -10.28 6.79 99.48 0.68 -9.60 16 6 H -0.32 -15.21 7.11 99.48 0.71 -14.51 16 7 C -0.24 -12.30 7.51 84.03 0.63 -11.67 16 8 H 0.06 3.31 6.01 -2.91 -0.02 3.29 16 9 N -0.62 -25.76 2.78 -674.49 -1.87 -27.63 16 10 C 0.08 3.20 4.38 86.35 0.38 3.58 16 11 C 0.05 1.66 6.98 72.08 0.50 2.16 16 12 O -0.39 -12.06 10.74 -148.98 -1.60 -13.66 16 13 C 0.05 1.57 6.27 71.94 0.45 2.02 16 14 C 0.13 4.25 3.19 44.83 0.14 4.39 16 15 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 16 C 0.14 4.78 4.44 86.38 0.38 5.16 16 17 N -0.68 -23.47 3.77 -463.05 -1.75 -25.21 16 18 C 0.50 17.57 7.90 87.66 0.69 18.27 16 19 O -0.59 -24.81 16.43 -3.05 -0.05 -24.86 16 20 C 0.08 2.24 5.83 85.63 0.50 2.74 16 21 N -0.51 -14.63 2.08 -661.77 -1.38 -16.00 16 22 C 0.21 3.34 10.40 83.40 0.87 4.21 16 23 C -0.28 -4.23 10.03 22.26 0.22 -4.01 16 24 C 0.45 10.37 7.91 85.21 0.67 11.04 16 25 O -0.44 -7.04 13.55 -84.38 -1.14 -8.18 16 26 N -0.66 -22.89 10.40 -438.81 -4.56 -27.46 16 27 C 0.64 26.16 8.34 179.58 1.50 27.66 16 28 O -0.59 -31.92 16.72 -5.25 -0.09 -32.01 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.04 1.63 6.89 -2.39 -0.02 1.61 16 31 H 0.06 2.63 4.85 -2.39 -0.01 2.62 16 32 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.04 1.28 8.13 -2.38 -0.02 1.26 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 38 H 0.41 14.06 7.31 -92.71 -0.68 13.38 16 39 H 0.11 3.81 7.38 -2.39 -0.02 3.79 16 40 H 0.19 2.47 8.03 -2.39 -0.02 2.45 16 41 H 0.24 0.65 8.06 -2.91 -0.02 0.62 16 42 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.43 4.54 8.98 -74.05 -0.66 3.88 16 Total: -1.00 -94.99 353.79 -3.44 -98.43 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.36 Total: 26.12 kcal Atomic # 6 Polarization: 57.29 SS G_CDS: 7.39 Total: 64.69 kcal Atomic # 7 Polarization: -145.81 SS G_CDS: -9.26 Total: -155.07 kcal Atomic # 8 Polarization: -75.83 SS G_CDS: -2.88 Total: -78.71 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.67 Total: 44.54 kcal Total: -94.99 -3.44 -98.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484598438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.235 kcal (2) G-P(sol) polarization free energy of solvation -94.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds