Wall clock time and date at job start Tue Mar 31 2020 20:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99738 * 2 1 4 4 H 1.48504 * 109.47249 * 269.99933 * 3 2 1 5 5 H 1.48495 * 109.47479 * 29.99929 * 3 2 1 6 6 H 1.48502 * 109.47038 * 150.00240 * 3 2 1 7 7 C 1.38811 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00014 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46882 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.55821 * 59.87133 * 11 10 9 13 13 C 1.53300 * 109.51089 * 179.97438 * 11 10 9 14 14 N 1.47148 * 108.41473 * 172.24371 * 13 11 10 15 15 C 1.34778 * 120.98259 * 129.42375 * 14 13 11 16 16 O 1.21278 * 119.99716 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99874 * 179.97438 * 15 14 13 18 18 N 1.46507 * 109.46913 * 179.97438 * 17 15 14 19 19 C 1.36161 * 119.84948 * 90.00309 * 18 17 15 20 20 C 1.35545 * 119.25733 * 180.02562 * 19 18 17 21 21 C 1.40739 * 118.99911 * 359.97438 * 20 19 18 22 22 O 1.35159 * 120.16650 * 180.02562 * 21 20 19 23 23 N 1.32434 * 119.66800 * 0.02562 * 21 20 19 24 24 C 1.33263 * 120.72893 * 359.71934 * 23 21 20 25 25 O 1.21978 * 119.47869 * 180.27727 * 24 23 21 26 26 C 1.47156 * 118.03649 * 309.44697 * 14 13 11 27 27 C 1.53286 * 108.38530 * 50.53434 * 26 14 13 28 28 O 1.42961 * 109.22305 * 307.70098 * 27 26 14 29 29 H 0.96997 * 120.00352 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99711 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47547 * 59.99686 * 10 9 7 32 32 H 1.09006 * 109.46603 * 299.99487 * 10 9 7 33 33 H 1.09002 * 109.68260 * 52.49979 * 13 11 10 34 34 H 1.08999 * 109.68056 * 291.98411 * 13 11 10 35 35 H 1.08993 * 109.47438 * 300.00006 * 17 15 14 36 36 H 1.08998 * 109.46742 * 60.00431 * 17 15 14 37 37 H 1.08001 * 120.37385 * 359.97316 * 19 18 17 38 38 H 1.07998 * 120.50221 * 179.97438 * 20 19 18 39 39 H 0.96704 * 114.00079 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.67987 * 170.26585 * 26 14 13 41 41 H 1.09001 * 109.67517 * 290.77501 * 26 14 13 42 42 H 1.09003 * 109.51258 * 67.62584 * 27 26 14 43 43 H 1.09002 * 109.51282 * 187.72484 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.4353 -4.7618 -0.8897 13 6 1.8294 -6.1478 -0.0018 14 7 0.8630 -7.2415 0.1860 15 6 0.8497 -8.3053 -0.6414 16 8 1.6424 -8.3714 -1.5569 17 6 -0.1494 -9.4132 -0.4282 18 7 0.0394 -10.4446 -1.4515 19 6 0.8946 -11.4789 -1.2215 20 6 1.0605 -12.4262 -2.1767 21 6 0.3419 -12.3134 -3.3815 22 8 0.4890 -13.2449 -4.3498 23 7 -0.4791 -11.2901 -3.5618 24 6 -0.6370 -10.3683 -2.6125 25 8 -1.4030 -9.4379 -2.8006 26 6 -0.0888 -7.1391 1.3036 27 6 -0.7615 -5.7632 1.2412 28 8 0.2447 -4.7501 1.1694 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6848 -3.7146 0.8893 32 1 2.6847 -3.7145 -0.8906 33 1 2.5540 -6.1543 0.8124 34 1 2.3457 -6.2735 -0.9536 35 1 -0.0026 -9.8498 0.5596 36 1 -1.1596 -9.0104 -0.5010 37 1 1.4353 -11.5434 -0.2888 38 1 1.7340 -13.2549 -2.0157 39 1 -0.0455 -13.0801 -5.1386 40 1 -0.8432 -7.9210 1.2160 41 1 0.4426 -7.2461 2.2492 42 1 -1.3971 -5.7083 0.3574 43 1 -1.3671 -5.6131 2.1350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484682496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:42 Heat of formation + Delta-G solvation = -111.020936 kcal Electronic energy + Delta-G solvation = -29213.681427 eV Core-core repulsion = 24873.842980 eV Total energy + Delta-G solvation = -4339.838447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.96461 -41.41170 -39.87962 -39.36505 -37.85679 -36.71270 -35.84482 -35.64544 -33.96506 -32.44417 -31.92854 -30.04161 -29.00482 -27.01683 -25.80490 -25.00603 -24.48874 -23.86944 -22.37174 -20.79116 -20.63868 -19.28003 -19.13858 -18.86934 -18.42406 -17.63057 -17.24946 -16.99709 -16.95899 -16.66395 -16.40696 -16.04427 -15.87967 -15.59492 -15.38162 -15.04480 -14.95865 -14.86408 -14.58726 -14.34497 -14.29120 -14.06625 -13.46095 -13.37153 -13.10035 -13.00528 -12.80329 -12.62935 -12.29023 -12.07193 -12.06573 -11.90489 -11.71584 -11.43769 -11.23168 -10.99149 -10.98140 -10.94561 -9.72110 -9.70097 -9.03341 -7.95589 -5.25716 -0.32888 0.65891 1.14069 1.30251 1.46276 1.49247 1.57656 1.77060 2.25974 2.55012 2.63949 2.72558 3.21021 3.27073 3.38020 3.52188 3.60310 3.76682 3.85592 3.91701 4.00360 4.07063 4.10881 4.16241 4.32307 4.39258 4.42782 4.45789 4.57170 4.63589 4.73224 4.87015 4.91530 5.05937 5.13002 5.20433 5.30575 5.46388 6.11598 6.13839 6.20193 6.26140 6.63021 6.83960 7.02043 7.31379 8.05250 8.29777 9.28216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002140 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.330782 B =13082.756920 C =13379.100861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.160 3.840 11 C 0.086 3.914 12 H 0.036 0.964 13 C 0.098 3.902 14 N -0.607 5.607 15 C 0.500 3.500 16 O -0.577 6.577 17 C 0.081 3.919 18 N -0.514 5.514 19 C 0.217 3.783 20 C -0.284 4.284 21 C 0.455 3.545 22 O -0.441 6.441 23 N -0.660 5.660 24 C 0.649 3.351 25 O -0.593 6.593 26 C 0.074 3.926 27 C 0.031 3.969 28 O -0.385 6.385 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.195 0.805 36 H 0.131 0.869 37 H 0.241 0.759 38 H 0.203 0.797 39 H 0.429 0.571 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.040 0.960 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 -34.407 5.351 34.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.033 3.967 11 C 0.027 3.973 12 H 0.054 0.946 13 C -0.026 4.026 14 N -0.341 5.341 15 C 0.288 3.712 16 O -0.456 6.456 17 C -0.045 4.045 18 N -0.229 5.229 19 C 0.084 3.916 20 C -0.309 4.309 21 C 0.256 3.744 22 O -0.237 6.237 23 N -0.419 5.419 24 C 0.351 3.649 25 O -0.472 6.472 26 C -0.048 4.048 27 C -0.046 4.046 28 O -0.304 6.304 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.212 0.788 36 H 0.149 0.851 37 H 0.257 0.743 38 H 0.220 0.780 39 H 0.289 0.711 40 H 0.152 0.848 41 H 0.130 0.870 42 H 0.058 0.942 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.724 -33.693 4.574 34.046 hybrid contribution -0.289 1.428 -0.744 1.636 sum 1.435 -32.265 3.830 32.523 Atomic orbital electron populations 1.69850 1.06795 1.26114 1.59365 1.25667 0.96478 1.01403 1.03572 0.85055 0.77727 0.79022 0.77417 1.21464 1.22054 1.19072 1.19678 0.91622 0.85184 1.41435 0.90263 1.42423 1.05694 1.00914 1.89368 1.20771 0.93041 0.83913 0.98929 1.22456 0.92368 0.94602 0.87883 0.94572 1.22066 0.91675 0.84597 1.04221 1.48203 1.35513 1.19628 1.30736 1.21341 0.84891 0.83975 0.80967 1.90745 1.42834 1.79515 1.32554 1.22167 1.00744 0.87469 0.94098 1.45951 1.37154 1.22537 1.17249 1.23323 0.85028 0.81994 1.01296 1.21120 1.10651 1.07199 0.91928 1.20897 0.83195 0.82658 0.87641 1.84983 1.65904 1.43829 1.28995 1.69490 1.30551 1.09260 1.32620 1.17487 0.81881 0.85714 0.79846 1.90971 1.41708 1.35278 1.79292 1.22848 0.93158 0.98933 0.89823 1.23281 0.90245 0.87382 1.03709 1.88121 1.47366 1.53188 1.41681 0.94001 0.79394 0.94527 0.94360 0.88227 0.89675 0.78797 0.85108 0.74314 0.78014 0.71130 0.84841 0.86993 0.94154 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.89 13.06 21.65 0.28 -61.60 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 3 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.74 -40.18 5.50 -343.46 -1.89 -42.07 16 10 C 0.16 6.74 5.96 86.38 0.51 7.25 16 11 C 0.09 3.00 2.87 30.69 0.09 3.09 16 12 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 13 C 0.10 2.63 5.92 86.36 0.51 3.14 16 14 N -0.61 -12.51 3.02 -817.36 -2.47 -14.98 16 15 C 0.50 10.86 7.78 87.66 0.68 11.54 16 16 O -0.58 -18.32 15.90 -3.02 -0.05 -18.37 16 17 C 0.08 0.96 4.21 85.63 0.36 1.32 16 18 N -0.51 -8.53 2.08 -661.77 -1.38 -9.90 16 19 C 0.22 1.43 10.40 83.40 0.87 2.30 16 20 C -0.28 -2.27 10.03 22.26 0.22 -2.04 16 21 C 0.45 7.16 7.91 85.21 0.67 7.84 16 22 O -0.44 -4.64 13.55 -84.37 -1.14 -5.79 16 23 N -0.66 -16.97 10.40 -438.81 -4.56 -21.53 16 24 C 0.65 18.53 8.34 179.59 1.50 20.02 16 25 O -0.59 -22.78 16.72 -5.25 -0.09 -22.86 16 26 C 0.07 0.93 6.54 86.35 0.56 1.50 16 27 C 0.03 0.67 6.99 72.08 0.50 1.18 16 28 O -0.38 -13.02 10.15 -148.98 -1.51 -14.53 16 29 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.37 21.95 7.55 -92.70 -0.70 21.25 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 2.58 7.08 -2.39 -0.02 2.56 16 35 H 0.20 -0.46 7.91 -2.39 -0.02 -0.48 16 36 H 0.13 1.78 6.89 -2.39 -0.02 1.77 16 37 H 0.24 -1.36 8.06 -2.91 -0.02 -1.38 16 38 H 0.20 0.08 8.06 -2.91 -0.02 0.05 16 39 H 0.43 2.19 8.98 -74.05 -0.66 1.53 16 40 H 0.13 0.54 6.05 -2.39 -0.01 0.52 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -101.84 367.38 -3.28 -105.11 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.29 Total: 17.73 kcal Atomic # 6 Polarization: 31.52 SS G_CDS: 7.79 Total: 39.31 kcal Atomic # 7 Polarization: -140.07 SS G_CDS: -10.02 Total: -150.09 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -2.79 Total: -61.55 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -101.84 -3.28 -105.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484682496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.910 kcal (2) G-P(sol) polarization free energy of solvation -101.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds