Wall clock time and date at job start Tue Mar 31 2020 22:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35314 * 128.04019 * 2 1 4 4 O 1.34017 * 106.66864 * 180.22896 * 3 2 1 5 5 N 1.20909 * 111.84744 * 359.77082 * 4 3 2 6 6 C 1.30986 * 111.43980 * 359.97438 * 5 4 3 7 7 C 1.48326 * 126.94154 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00338 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99644 * 0.02857 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 O 1.42902 * 112.93986 * 53.43041 * 11 10 9 13 13 C 1.53936 * 113.73271 * 281.72830 * 11 10 9 14 14 N 1.47965 * 86.18125 * 221.92186 * 13 11 10 15 15 C 1.46897 * 110.99986 * 137.58290 * 14 13 11 16 16 C 1.50695 * 109.47655 * 70.64030 * 15 14 13 17 17 O 1.21293 * 119.99477 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00357 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00197 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99830 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99495 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00536 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47026 * 89.99778 * 23 21 19 25 25 H 1.48501 * 109.47306 * 210.00191 * 23 21 19 26 26 H 1.48504 * 109.46868 * 330.00286 * 23 21 19 27 27 C 1.47965 * 90.76016 * 24.68706 * 14 13 11 28 28 H 1.09002 * 109.46324 * 270.14248 * 1 2 3 29 29 H 1.08997 * 109.47523 * 30.14068 * 1 2 3 30 30 H 1.09002 * 109.47048 * 150.14780 * 1 2 3 31 31 H 1.07997 * 126.66169 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 34 34 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 35 35 H 0.96700 * 114.00112 * 309.67230 * 12 11 10 36 36 H 1.09004 * 113.75666 * 336.23438 * 13 11 10 37 37 H 1.08994 * 113.76101 * 107.60142 * 13 11 10 38 38 H 1.08998 * 109.46976 * 190.64523 * 15 14 13 39 39 H 1.09003 * 109.47269 * 310.63350 * 15 14 13 40 40 H 0.96997 * 120.00370 * 359.97438 * 18 16 15 41 41 H 0.97001 * 119.99570 * 180.02562 * 22 21 19 42 42 H 1.08993 * 113.75941 * 220.99055 * 27 14 13 43 43 H 1.09007 * 113.85397 * 89.64501 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 -0.0051 5 7 3.5989 -0.6317 -0.0037 6 6 2.3837 -1.1206 0.0031 7 6 1.9992 -2.5532 0.0063 8 8 0.8255 -2.8672 0.0123 9 7 2.9518 -3.5065 0.0028 10 6 2.5721 -4.9215 0.0065 11 6 3.8331 -5.7880 0.0019 12 8 4.7411 -5.4557 1.0542 13 6 4.4995 -5.9047 -1.3808 14 7 4.6889 -7.3365 -1.0589 15 6 4.3832 -8.1821 -2.2205 16 6 5.4548 -8.0069 -3.2655 17 8 6.3823 -7.2522 -3.0623 18 7 5.3831 -8.6896 -4.4253 19 6 6.3578 -8.5298 -5.3762 20 1 7.1828 -7.8566 -5.1959 21 6 6.2841 -9.2341 -6.5717 22 7 7.2186 -9.0813 -7.4829 23 14 4.8568 -10.3980 -6.8837 24 1 3.7487 -9.6578 -7.5391 25 1 5.3042 -11.5041 -7.7678 26 1 4.3827 -10.9572 -5.5923 27 6 3.5482 -7.2960 -0.1174 28 1 -0.3632 0.0026 1.0277 29 1 -0.3634 0.8887 -0.5160 30 1 -0.3633 -0.8913 -0.5115 31 1 2.0559 2.1074 -0.0004 32 1 3.8889 -3.2559 -0.0023 33 1 1.9861 -5.1381 0.8997 34 1 1.9771 -5.1404 -0.8802 35 1 4.9453 -4.5124 1.1142 36 1 3.8181 -5.7281 -2.2130 37 1 5.4320 -5.3470 -1.4674 38 1 4.3457 -9.2262 -1.9100 39 1 3.4185 -7.8922 -2.6372 40 1 4.6419 -9.2940 -4.5874 41 1 7.1670 -9.5726 -8.3176 42 1 3.7205 -7.8499 0.8053 43 1 2.5877 -7.5263 -0.5785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500959675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:37 Heat of formation + Delta-G solvation = -2.847080 kcal Electronic energy + Delta-G solvation = -28704.219993 eV Core-core repulsion = 24369.072316 eV Total energy + Delta-G solvation = -4335.147677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.54006 -40.86325 -39.73462 -38.13716 -36.00245 -35.15685 -34.72358 -33.95158 -32.80163 -31.71230 -30.49311 -28.71462 -27.86062 -26.27216 -25.34319 -24.36573 -22.44775 -22.11370 -21.10930 -20.09648 -19.43742 -19.08681 -18.28875 -18.22268 -17.26707 -16.79974 -16.50726 -15.82678 -15.73246 -15.51206 -15.38232 -14.93580 -14.68012 -14.27390 -14.18710 -13.76216 -13.71562 -13.58192 -13.33844 -13.21556 -13.04921 -12.82724 -12.50487 -12.33463 -12.16725 -11.83700 -11.81839 -11.44528 -11.16669 -10.93486 -10.76314 -10.61309 -10.59380 -10.06065 -9.98727 -9.91056 -9.62333 -9.57919 -8.79240 -8.38559 -8.19513 -6.32582 -3.84130 0.67701 1.20026 2.38598 2.68079 2.71697 3.01223 3.04924 3.13583 3.45848 3.57550 3.70888 3.88315 4.03315 4.08659 4.18861 4.38212 4.42835 4.57609 4.60048 4.89616 4.95540 5.12707 5.17196 5.17809 5.20777 5.30775 5.34136 5.37394 5.48789 5.51938 5.62822 5.72518 5.74964 5.84514 5.89804 6.05188 6.44846 6.82618 6.99454 7.33939 7.49016 7.56038 7.64572 8.12094 8.57990 8.93272 9.40408 9.80693 10.80526 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.002246 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.055610 B =12464.384047 C =13031.251089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.151 4.151 3 C -0.065 4.065 4 O 0.128 5.872 5 N -0.327 5.327 6 C -0.032 4.032 7 C 0.603 3.397 8 O -0.517 6.517 9 N -0.713 5.713 10 C 0.101 3.899 11 C 0.087 3.913 12 O -0.520 6.520 13 C -0.003 4.003 14 N -0.439 5.439 15 C 0.004 3.996 16 C 0.452 3.548 17 O -0.560 6.560 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.019 3.981 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.225 0.775 32 H 0.406 0.594 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.373 0.627 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.102 0.898 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.443 17.129 17.079 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.156 4.156 3 C -0.145 4.145 4 O 0.052 5.948 5 N -0.027 5.027 6 C -0.191 4.191 7 C 0.387 3.613 8 O -0.391 6.391 9 N -0.367 5.367 10 C -0.023 4.023 11 C 0.045 3.955 12 O -0.325 6.325 13 C -0.132 4.132 14 N -0.161 5.161 15 C -0.128 4.128 16 C 0.238 3.762 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.110 4.110 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.241 0.759 32 H 0.242 0.758 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.221 0.779 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.742 15.782 17.297 27.669 hybrid contribution -2.118 0.093 -1.042 2.362 sum -16.860 15.875 16.255 28.293 Atomic orbital electron populations 1.20237 0.86444 1.04038 1.03274 1.21385 0.99203 0.90010 1.04958 1.25832 0.82231 1.01427 1.05024 1.84791 1.29528 1.15073 1.65456 1.74192 1.21474 0.91831 1.15200 1.23396 0.89774 0.96923 1.09025 1.16797 0.85443 0.82327 0.76706 1.90797 1.17307 1.81652 1.49316 1.45738 1.10015 1.06276 1.74630 1.22158 0.97464 0.78719 1.03976 1.23049 0.88132 0.95416 0.88945 1.86631 1.64789 1.29446 1.51619 1.24568 1.01729 0.92050 0.94829 1.68490 1.34467 1.03562 1.09624 1.22557 0.97373 1.00152 0.92732 1.19546 0.88522 0.85096 0.83080 1.90570 1.35343 1.39573 1.78614 1.42213 1.24363 1.40526 1.15953 1.19424 1.04068 1.25719 0.94121 0.86299 1.25042 0.97518 0.97931 0.95700 1.69625 1.32979 1.41947 1.07533 0.86670 0.82567 0.81378 0.78771 1.19666 1.20112 1.19471 1.24128 0.94866 0.92572 0.99475 0.90466 0.90850 0.89435 0.75874 0.75814 0.89737 0.89617 0.77946 0.90704 0.87993 0.88715 0.92610 0.79723 0.91599 0.87935 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.01 36.01 0.36 -0.16 16 2 C -0.15 -1.17 6.34 -104.11 -0.66 -1.83 16 3 C -0.06 -0.34 12.24 29.69 0.36 0.02 16 4 O 0.13 1.01 11.18 17.24 0.19 1.20 16 5 N -0.33 -3.23 11.84 33.30 0.39 -2.84 16 6 C -0.03 -0.32 7.19 -82.52 -0.59 -0.92 16 7 C 0.60 6.80 7.85 -12.11 -0.10 6.70 16 8 O -0.52 -6.88 15.34 5.37 0.08 -6.80 16 9 N -0.71 -6.94 5.33 -61.09 -0.33 -7.27 16 10 C 0.10 0.98 5.28 -4.04 -0.02 0.96 16 11 C 0.09 0.98 1.52 -89.69 -0.14 0.85 16 12 O -0.52 -6.18 13.50 -35.23 -0.48 -6.66 16 13 C 0.00 -0.04 6.16 -2.76 -0.02 -0.06 16 14 N -0.44 -7.09 5.95 -239.62 -1.43 -8.52 16 15 C 0.00 0.07 5.31 -4.98 -0.03 0.04 16 16 C 0.45 10.38 7.59 -10.99 -0.08 10.30 16 17 O -0.56 -15.18 15.13 5.55 0.08 -15.10 16 18 N -0.59 -14.19 5.09 -10.97 -0.06 -14.25 16 19 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 20 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 23 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 27 C 0.02 0.22 7.37 -2.77 -0.02 0.20 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.73 6.89 -51.93 -0.36 0.37 16 31 H 0.22 0.11 8.06 -52.49 -0.42 -0.31 16 32 H 0.41 3.53 7.07 -40.82 -0.29 3.24 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.37 3.17 7.61 45.56 0.35 3.52 16 36 H 0.07 1.06 7.67 -51.93 -0.40 0.66 16 37 H 0.10 1.71 8.09 -51.93 -0.42 1.29 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.06 0.78 7.69 -51.93 -0.40 0.38 16 40 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 42 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -37.18 369.35 -5.75 -42.93 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -4.67 Total: 13.79 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.18 Total: 8.31 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.64 Total: -57.97 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.12 Total: -27.35 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.18 -5.75 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500959675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.084 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds