Wall clock time and date at job start Tue Mar 31 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35314 * 128.04019 * 2 1 4 4 O 1.34017 * 106.66864 * 180.22896 * 3 2 1 5 5 N 1.20909 * 111.84744 * 359.77082 * 4 3 2 6 6 C 1.30986 * 111.43980 * 359.97438 * 5 4 3 7 7 C 1.48326 * 126.94154 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00338 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99644 * 0.02857 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 O 1.42902 * 112.93986 * 53.43041 * 11 10 9 13 13 C 1.53936 * 113.73271 * 281.72830 * 11 10 9 14 14 N 1.47965 * 86.18125 * 221.92186 * 13 11 10 15 15 C 1.46897 * 110.99986 * 137.58290 * 14 13 11 16 16 C 1.50695 * 109.47655 * 70.64030 * 15 14 13 17 17 O 1.21293 * 119.99477 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00357 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00197 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99830 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99495 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00536 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47026 * 89.99778 * 23 21 19 25 25 H 1.48501 * 109.47306 * 210.00191 * 23 21 19 26 26 H 1.48504 * 109.46868 * 330.00286 * 23 21 19 27 27 C 1.47965 * 90.76016 * 24.68706 * 14 13 11 28 28 H 1.09002 * 109.46324 * 270.14248 * 1 2 3 29 29 H 1.08997 * 109.47523 * 30.14068 * 1 2 3 30 30 H 1.09002 * 109.47048 * 150.14780 * 1 2 3 31 31 H 1.07997 * 126.66169 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 34 34 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 35 35 H 0.96700 * 114.00112 * 309.67230 * 12 11 10 36 36 H 1.09004 * 113.75666 * 336.23438 * 13 11 10 37 37 H 1.08994 * 113.76101 * 107.60142 * 13 11 10 38 38 H 1.08998 * 109.46976 * 190.64523 * 15 14 13 39 39 H 1.09003 * 109.47269 * 310.63350 * 15 14 13 40 40 H 0.96997 * 120.00370 * 359.97438 * 18 16 15 41 41 H 0.97001 * 119.99570 * 180.02562 * 22 21 19 42 42 H 1.08993 * 113.75941 * 220.99055 * 27 14 13 43 43 H 1.09007 * 113.85397 * 89.64501 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 -0.0051 5 7 3.5989 -0.6317 -0.0037 6 6 2.3837 -1.1206 0.0031 7 6 1.9992 -2.5532 0.0063 8 8 0.8255 -2.8672 0.0123 9 7 2.9518 -3.5065 0.0028 10 6 2.5721 -4.9215 0.0065 11 6 3.8331 -5.7880 0.0019 12 8 4.7411 -5.4557 1.0542 13 6 4.4995 -5.9047 -1.3808 14 7 4.6889 -7.3365 -1.0589 15 6 4.3832 -8.1821 -2.2205 16 6 5.4548 -8.0069 -3.2655 17 8 6.3823 -7.2522 -3.0623 18 7 5.3831 -8.6896 -4.4253 19 6 6.3578 -8.5298 -5.3762 20 1 7.1828 -7.8566 -5.1959 21 6 6.2841 -9.2341 -6.5717 22 7 7.2186 -9.0813 -7.4829 23 14 4.8568 -10.3980 -6.8837 24 1 3.7487 -9.6578 -7.5391 25 1 5.3042 -11.5041 -7.7678 26 1 4.3827 -10.9572 -5.5923 27 6 3.5482 -7.2960 -0.1174 28 1 -0.3632 0.0026 1.0277 29 1 -0.3634 0.8887 -0.5160 30 1 -0.3633 -0.8913 -0.5115 31 1 2.0559 2.1074 -0.0004 32 1 3.8889 -3.2559 -0.0023 33 1 1.9861 -5.1381 0.8997 34 1 1.9771 -5.1404 -0.8802 35 1 4.9453 -4.5124 1.1142 36 1 3.8181 -5.7281 -2.2130 37 1 5.4320 -5.3470 -1.4674 38 1 4.3457 -9.2262 -1.9100 39 1 3.4185 -7.8922 -2.6372 40 1 4.6419 -9.2940 -4.5874 41 1 7.1670 -9.5726 -8.3176 42 1 3.7205 -7.8499 0.8053 43 1 2.5877 -7.5263 -0.5785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500959675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:36 Heat of formation + Delta-G solvation = -38.345858 kcal Electronic energy + Delta-G solvation = -28705.759335 eV Core-core repulsion = 24369.072316 eV Total energy + Delta-G solvation = -4336.687019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.16728 -41.89986 -40.71359 -39.86016 -37.06670 -35.97912 -35.75563 -35.57944 -33.79911 -33.42844 -31.67683 -29.38997 -28.82874 -27.31469 -26.89144 -25.46782 -23.65274 -22.70940 -21.84902 -21.30548 -21.05651 -20.30590 -19.71809 -18.86988 -18.08617 -17.86427 -17.64444 -17.12368 -16.92466 -16.67873 -16.53792 -16.34648 -15.59099 -15.56727 -15.18488 -14.95050 -14.66446 -14.51443 -14.39512 -14.24483 -14.18761 -14.09028 -13.64086 -13.48117 -13.35325 -13.04414 -12.99374 -12.53287 -12.44484 -12.41604 -12.00192 -11.93434 -11.54057 -11.46329 -11.43292 -11.04359 -10.47151 -10.45400 -10.39549 -10.28191 -9.73226 -8.44148 -6.05501 0.00323 0.68727 1.28053 1.33180 1.42646 1.63515 1.91479 1.92582 2.20635 2.23508 2.55093 2.77004 2.79165 3.11603 3.14751 3.18494 3.46016 3.54472 3.85174 3.93309 4.05858 4.07460 4.22211 4.33201 4.37193 4.41910 4.46912 4.54575 4.60097 4.73985 4.77508 4.80368 4.90053 4.93828 4.99637 5.31787 5.32797 5.49997 5.84177 5.94846 6.03868 6.53471 6.56197 6.74483 6.84669 7.00328 7.35720 7.92910 8.73588 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.002246 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.055610 B =12464.384047 C =13031.251089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.174 4.174 3 C -0.035 4.035 4 O 0.128 5.872 5 N -0.350 5.350 6 C -0.059 4.059 7 C 0.600 3.400 8 O -0.543 6.543 9 N -0.709 5.709 10 C 0.109 3.891 11 C 0.107 3.893 12 O -0.536 6.536 13 C -0.010 4.010 14 N -0.477 5.477 15 C 0.016 3.984 16 C 0.449 3.551 17 O -0.611 6.611 18 N -0.591 5.591 19 C -0.329 4.329 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.231 1.231 27 C 0.028 3.972 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.275 0.725 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.385 0.615 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.110 0.890 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.151 16.889 18.260 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.179 4.179 3 C -0.116 4.116 4 O 0.051 5.949 5 N -0.050 5.050 6 C -0.216 4.216 7 C 0.385 3.615 8 O -0.419 6.419 9 N -0.362 5.362 10 C -0.014 4.014 11 C 0.064 3.936 12 O -0.342 6.342 13 C -0.139 4.139 14 N -0.200 5.200 15 C -0.116 4.116 16 C 0.237 3.763 17 O -0.495 6.495 18 N -0.233 5.233 19 C -0.458 4.458 20 H 0.071 0.929 21 C -0.215 4.215 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.154 1.154 27 C -0.101 4.101 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.291 0.709 32 H 0.246 0.754 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.112 0.888 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.128 0.872 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.446 15.536 18.511 30.403 hybrid contribution -0.816 0.347 -1.361 1.624 sum -19.262 15.884 17.150 30.290 Atomic orbital electron populations 1.20229 0.85568 1.04123 1.03611 1.21714 1.00056 0.89943 1.06192 1.26705 0.80402 1.02830 1.01621 1.84755 1.30936 1.14379 1.64825 1.74196 1.21675 0.92779 1.16305 1.23503 0.90724 0.96963 1.10458 1.17013 0.85211 0.83051 0.76215 1.90772 1.18170 1.82195 1.50732 1.45739 1.10096 1.06317 1.74048 1.22086 0.96459 0.78261 1.04624 1.22830 0.87996 0.96071 0.86692 1.86595 1.65189 1.30865 1.51560 1.24535 1.00568 0.91538 0.97261 1.68452 1.37596 1.03839 1.10157 1.22524 0.95892 1.02096 0.91052 1.20867 0.89015 0.82956 0.83483 1.90551 1.37923 1.41369 1.79668 1.42036 1.24083 1.41539 1.15624 1.18983 1.04288 1.26099 0.96459 0.92904 1.26149 1.01264 0.99668 0.94390 1.69811 1.35864 1.43432 1.08371 0.85350 0.77706 0.78038 0.80339 1.18028 1.19955 1.15382 1.24266 0.94839 0.92284 0.98683 0.90019 0.88068 0.91958 0.70937 0.75404 0.88745 0.89184 0.76523 0.90364 0.91522 0.85960 0.88813 0.77431 0.91101 0.87223 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.01 71.24 0.71 -0.16 16 2 C -0.17 -2.47 6.34 -19.53 -0.12 -2.59 16 3 C -0.04 -0.28 12.24 67.14 0.82 0.54 16 4 O 0.13 1.84 11.18 71.87 0.80 2.65 16 5 N -0.35 -6.85 11.84 -49.50 -0.59 -7.43 16 6 C -0.06 -1.18 7.19 42.96 0.31 -0.87 16 7 C 0.60 13.53 7.85 86.93 0.68 14.22 16 8 O -0.54 -14.41 15.34 -3.71 -0.06 -14.47 16 9 N -0.71 -13.62 5.33 -465.49 -2.48 -16.10 16 10 C 0.11 1.95 5.28 86.38 0.46 2.41 16 11 C 0.11 2.27 1.52 -10.15 -0.02 2.25 16 12 O -0.54 -12.37 13.50 -148.98 -2.01 -14.38 16 13 C -0.01 -0.28 6.16 86.40 0.53 0.25 16 14 N -0.48 -14.74 5.95 -915.22 -5.44 -20.18 16 15 C 0.02 0.49 5.31 85.56 0.45 0.94 16 16 C 0.45 20.72 7.59 87.66 0.67 21.39 16 17 O -0.61 -34.84 15.13 -3.07 -0.05 -34.89 16 18 N -0.59 -28.27 5.09 -306.99 -1.56 -29.83 16 19 C -0.33 -19.58 10.16 84.04 0.85 -18.73 16 20 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 22 N -0.93 -56.93 13.96 21.66 0.30 -56.63 16 23 Si 0.97 38.97 27.74 68.60 1.90 40.87 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.80 6.52 99.48 0.65 -7.16 16 27 C 0.03 0.56 7.37 86.40 0.64 1.19 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 1.03 6.89 -2.39 -0.02 1.01 16 31 H 0.28 -1.02 8.06 -2.91 -0.02 -1.04 16 32 H 0.41 7.28 7.07 -92.71 -0.66 6.62 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.58 8.05 -2.38 -0.02 1.56 16 35 H 0.39 6.53 7.61 -74.06 -0.56 5.97 16 36 H 0.08 2.19 7.67 -2.39 -0.02 2.17 16 37 H 0.07 2.39 8.09 -2.39 -0.02 2.37 16 38 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.09 2.21 7.69 -2.39 -0.02 2.19 16 40 H 0.39 15.31 5.76 -92.71 -0.53 14.77 16 41 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.12 1.60 7.75 -2.38 -0.02 1.58 16 Total: -1.00 -89.30 369.35 -3.44 -92.75 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.71 Total: 37.25 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 6.45 Total: 20.40 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -9.77 Total: -130.18 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -1.31 Total: -61.09 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.87 kcal Total: -89.30 -3.44 -92.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500959675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.401 kcal (2) G-P(sol) polarization free energy of solvation -89.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds