Wall clock time and date at job start Tue Mar 31 2020 21:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00340 * 2 1 4 4 O 1.20821 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99841 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46855 * 180.02562 * 5 3 2 7 7 C 1.36934 * 119.99737 * 270.15710 * 6 5 3 8 8 H 1.07997 * 120.00032 * 187.18652 * 7 6 5 9 9 C 1.38822 * 120.00421 * 7.18925 * 7 6 5 10 10 N 1.31621 * 119.99488 * 32.70497 * 9 7 6 11 11 Si 1.86795 * 120.00083 * 212.70701 * 9 7 6 12 12 H 1.48503 * 109.47291 * 94.99611 * 11 9 7 13 13 H 1.48500 * 109.47053 * 214.99363 * 11 9 7 14 14 H 1.48498 * 109.47211 * 334.99785 * 11 9 7 15 15 C 1.46491 * 120.00233 * 90.15775 * 6 5 3 16 16 C 1.53000 * 109.47081 * 269.99931 * 15 6 5 17 17 C 1.50704 * 109.47119 * 179.97438 * 16 15 6 18 18 O 1.21291 * 119.99788 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.39923 * 120.00127 * 184.73786 * 19 17 16 21 21 C 1.38906 * 120.05595 * 144.59438 * 20 19 17 22 22 C 1.38103 * 119.97762 * 180.23028 * 21 20 19 23 23 C 1.38263 * 120.09278 * 359.49538 * 22 21 20 24 24 C 1.50706 * 119.93976 * 180.23106 * 23 22 21 25 25 C 1.38496 * 120.11967 * 0.50566 * 23 22 21 26 26 F 1.35099 * 119.99065 * 179.72535 * 25 23 22 27 27 C 1.38351 * 120.01512 * 359.74504 * 25 23 22 28 28 H 1.08998 * 109.46993 * 59.99669 * 1 2 3 29 29 H 1.08996 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46954 * 300.00227 * 1 2 3 31 31 H 1.08995 * 109.46841 * 59.99937 * 5 3 2 32 32 H 1.09002 * 109.47075 * 300.00025 * 5 3 2 33 33 H 0.97000 * 119.99164 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47202 * 149.99818 * 15 6 5 35 35 H 1.09003 * 109.47027 * 29.99826 * 15 6 5 36 36 H 1.09000 * 109.47195 * 59.99882 * 16 15 6 37 37 H 1.09003 * 109.47105 * 299.99848 * 16 15 6 38 38 H 0.97002 * 119.99659 * 4.73882 * 19 17 16 39 39 H 1.07999 * 120.01175 * 359.95468 * 21 20 19 40 40 H 1.08002 * 119.95100 * 179.74469 * 22 21 20 41 41 H 1.08994 * 109.47030 * 270.27106 * 24 23 22 42 42 H 1.08997 * 109.47455 * 30.27598 * 24 23 22 43 43 H 1.09005 * 109.47104 * 150.27472 * 24 23 22 44 44 H 1.07998 * 120.04659 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6796 0.0002 7 6 4.1724 3.3378 -1.1854 8 1 4.5890 4.3341 -1.1890 9 6 3.8300 2.7244 -2.3828 10 7 2.8100 1.8938 -2.4285 11 14 4.8167 3.0779 -3.9289 12 1 5.8582 2.0334 -4.1011 13 1 3.9113 3.0728 -5.1059 14 1 5.4652 4.4084 -3.8089 15 6 4.1935 3.3802 1.2691 16 6 2.8839 4.0332 1.7157 17 6 3.1014 4.7534 3.0215 18 8 4.1963 4.7456 3.5433 19 7 2.0796 5.4071 3.6090 20 6 2.3035 6.1578 4.7683 21 6 1.6015 7.3377 4.9795 22 6 1.8273 8.0799 6.1220 23 6 2.7438 7.6450 7.0614 24 6 2.9837 8.4550 8.3095 25 6 3.4460 6.4692 6.8549 26 9 4.3449 6.0495 7.7719 27 6 3.2273 5.7246 5.7095 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7803 0.8892 33 1 2.5710 1.4649 -3.2650 34 1 4.9559 4.1480 1.1375 35 1 4.5215 2.6685 2.0268 36 1 2.1214 3.2654 1.8473 37 1 2.5559 4.7449 0.9581 38 1 1.1889 5.3570 3.2281 39 1 0.8826 7.6768 4.2484 40 1 1.2842 8.9993 6.2838 41 1 3.7802 9.1762 8.1270 42 1 2.0699 8.9836 8.5808 43 1 3.2745 7.7908 9.1234 44 1 3.7742 4.8075 5.5481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559581226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:14 Heat of formation + Delta-G solvation = -113.272889 kcal Electronic energy + Delta-G solvation = -29166.687068 eV Core-core repulsion = 24806.831007 eV Total energy + Delta-G solvation = -4359.856061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.95297 -40.47219 -39.06446 -38.53138 -36.20003 -35.01245 -34.60398 -32.35794 -31.68339 -30.69431 -29.94562 -27.99107 -26.61990 -26.01544 -24.38509 -23.23978 -22.00664 -21.16615 -20.18160 -19.70069 -18.20242 -17.25871 -16.90004 -16.34665 -16.24658 -15.85270 -15.72736 -15.50821 -15.45925 -15.17094 -14.98814 -14.65437 -13.98691 -13.84367 -13.63548 -13.51708 -13.37461 -13.13536 -12.76221 -12.54334 -12.39758 -12.17163 -12.00817 -11.84333 -11.75454 -11.53805 -11.41593 -11.13691 -10.86697 -10.61845 -10.28469 -10.21637 -10.12905 -9.94656 -9.71424 -9.54457 -9.16488 -8.91291 -8.53198 -8.17210 -7.25527 -6.04358 -3.23589 0.96351 1.10156 2.74458 3.05761 3.33869 3.43472 3.44573 3.49240 3.76598 3.96374 4.17993 4.42539 4.55948 4.66447 4.88076 4.96538 5.10694 5.15564 5.26986 5.36073 5.45723 5.54462 5.69260 5.72916 5.78061 5.80004 5.82936 5.89220 5.96134 6.03540 6.13669 6.20414 6.21070 6.34579 6.38027 6.51772 6.60317 6.85511 6.91293 6.92889 7.40088 7.63035 7.72435 8.04377 8.25766 8.92438 9.28355 9.64246 10.05164 11.07004 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002614 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.410692 B =10707.893608 C =11510.344812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.383 6.383 3 C 0.463 3.537 4 O -0.503 6.503 5 C 0.182 3.818 6 N -0.564 5.564 7 C -0.263 4.263 8 H 0.084 0.916 9 C 0.006 3.994 10 N -0.888 5.888 11 Si 0.898 3.102 12 H -0.286 1.286 13 H -0.294 1.294 14 H -0.278 1.278 15 C 0.163 3.837 16 C -0.156 4.156 17 C 0.516 3.484 18 O -0.525 6.525 19 N -0.681 5.681 20 C 0.179 3.821 21 C -0.156 4.156 22 C -0.074 4.074 23 C -0.145 4.145 24 C -0.109 4.109 25 C 0.115 3.885 26 F -0.137 7.137 27 C -0.156 4.156 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.257 0.743 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.415 0.585 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 6.227 15.599 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.300 6.300 3 C 0.303 3.697 4 O -0.388 6.388 5 C 0.052 3.948 6 N -0.283 5.283 7 C -0.391 4.391 8 H 0.102 0.898 9 C -0.193 4.193 10 N -0.531 5.531 11 Si 0.728 3.272 12 H -0.213 1.213 13 H -0.221 1.221 14 H -0.203 1.203 15 C 0.036 3.964 16 C -0.198 4.198 17 C 0.306 3.694 18 O -0.400 6.400 19 N -0.327 5.327 20 C 0.083 3.917 21 C -0.177 4.177 22 C -0.093 4.093 23 C -0.147 4.147 24 C -0.166 4.166 25 C 0.095 3.905 26 F -0.116 7.116 27 C -0.177 4.177 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.251 0.749 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.411 6.396 15.755 17.567 hybrid contribution -0.565 0.199 -1.192 1.334 sum -4.976 6.595 14.563 16.743 Atomic orbital electron populations 1.22850 0.79843 1.01327 1.01192 1.86560 1.20980 1.36817 1.85670 1.25632 0.93537 0.80263 0.70239 1.90418 1.66644 1.36333 1.45434 1.20477 0.85705 0.86869 1.01716 1.44415 1.74839 1.07066 1.01946 1.19280 1.35968 1.01260 0.82560 0.89790 1.24706 0.96825 0.99941 0.97796 1.70028 1.22783 1.33695 1.26633 0.86323 0.80272 0.78139 0.82511 1.21282 1.22141 1.20345 1.20746 0.92906 0.95561 0.87191 1.22667 1.04765 1.01015 0.91403 1.21828 0.83288 0.77296 0.87015 1.90659 1.24650 1.59572 1.65124 1.43925 1.13399 1.49818 1.25553 1.17534 0.96418 0.91184 0.86555 1.20995 1.03370 0.93794 0.99545 1.20647 0.96851 0.99230 0.92574 1.19877 0.99590 0.95897 0.99289 1.20667 1.02416 0.99305 0.94213 1.17324 0.90810 0.94472 0.87901 1.91476 1.65244 1.89938 1.64900 1.21251 1.01888 1.02604 0.92005 0.92785 0.90205 0.93716 0.87441 0.92341 0.93238 0.91846 0.93076 0.88583 0.88252 0.74894 0.84982 0.84820 0.91066 0.91167 0.91399 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.56 101.05 1.07 1.78 16 2 O -0.38 -7.89 10.56 -39.25 -0.41 -8.30 16 3 C 0.46 10.55 5.99 36.01 0.22 10.76 16 4 O -0.50 -12.41 13.43 -18.75 -0.25 -12.67 16 5 C 0.18 4.03 5.59 -5.19 -0.03 4.00 16 6 N -0.56 -13.03 2.08 -174.61 -0.36 -13.40 16 7 C -0.26 -6.73 9.64 -15.06 -0.15 -6.87 16 8 H 0.08 2.15 8.00 -52.49 -0.42 1.73 16 9 C 0.01 0.17 4.68 -17.43 -0.08 0.09 16 10 N -0.89 -24.08 9.39 55.49 0.52 -23.56 16 11 Si 0.90 20.81 29.66 -169.99 -5.04 15.77 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.16 3.25 5.00 -4.05 -0.02 3.23 16 16 C -0.16 -2.78 5.30 -27.88 -0.15 -2.93 16 17 C 0.52 8.39 7.67 -10.98 -0.08 8.31 16 18 O -0.52 -9.87 13.44 5.55 0.07 -9.79 16 19 N -0.68 -8.90 5.33 -9.87 -0.05 -8.95 16 20 C 0.18 2.32 6.29 -83.70 -0.53 1.80 16 21 C -0.16 -1.62 9.97 -39.38 -0.39 -2.02 16 22 C -0.07 -0.70 9.69 -39.62 -0.38 -1.08 16 23 C -0.14 -1.55 5.89 -104.51 -0.62 -2.17 16 24 C -0.11 -0.88 9.83 36.01 0.35 -0.52 16 25 C 0.11 1.51 7.24 -39.44 -0.29 1.22 16 26 F -0.14 -1.87 16.47 2.25 0.04 -1.83 16 27 C -0.16 -2.24 8.67 -39.33 -0.34 -2.59 16 28 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.11 2.57 6.47 -51.93 -0.34 2.24 16 32 H 0.06 1.10 7.89 -51.93 -0.41 0.69 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.06 1.29 7.99 -51.93 -0.41 0.88 16 35 H 0.05 0.96 7.85 -51.93 -0.41 0.55 16 36 H 0.10 1.78 6.41 -51.93 -0.33 1.45 16 37 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.41 4.33 8.82 -40.82 -0.36 3.97 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 43 H 0.07 0.55 7.63 -51.93 -0.40 0.16 16 44 H 0.15 2.44 6.25 -52.49 -0.33 2.11 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -31.25 374.21 -7.19 -38.44 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.92 Total: 5.65 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -1.42 Total: 13.01 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.11 Total: -45.91 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.59 Total: -30.76 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.04 Total: 15.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.25 -7.19 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559581226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.836 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds