Wall clock time and date at job start Tue Mar 31 2020 21:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00340 * 2 1 4 4 O 1.20821 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99841 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46855 * 180.02562 * 5 3 2 7 7 C 1.36934 * 119.99737 * 270.15710 * 6 5 3 8 8 H 1.07997 * 120.00032 * 187.18652 * 7 6 5 9 9 C 1.38822 * 120.00421 * 7.18925 * 7 6 5 10 10 N 1.31621 * 119.99488 * 32.70497 * 9 7 6 11 11 Si 1.86795 * 120.00083 * 212.70701 * 9 7 6 12 12 H 1.48503 * 109.47291 * 94.99611 * 11 9 7 13 13 H 1.48500 * 109.47053 * 214.99363 * 11 9 7 14 14 H 1.48498 * 109.47211 * 334.99785 * 11 9 7 15 15 C 1.46491 * 120.00233 * 90.15775 * 6 5 3 16 16 C 1.53000 * 109.47081 * 269.99931 * 15 6 5 17 17 C 1.50704 * 109.47119 * 179.97438 * 16 15 6 18 18 O 1.21291 * 119.99788 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.39923 * 120.00127 * 184.73786 * 19 17 16 21 21 C 1.38906 * 120.05595 * 144.59438 * 20 19 17 22 22 C 1.38103 * 119.97762 * 180.23028 * 21 20 19 23 23 C 1.38263 * 120.09278 * 359.49538 * 22 21 20 24 24 C 1.50706 * 119.93976 * 180.23106 * 23 22 21 25 25 C 1.38496 * 120.11967 * 0.50566 * 23 22 21 26 26 F 1.35099 * 119.99065 * 179.72535 * 25 23 22 27 27 C 1.38351 * 120.01512 * 359.74504 * 25 23 22 28 28 H 1.08998 * 109.46993 * 59.99669 * 1 2 3 29 29 H 1.08996 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46954 * 300.00227 * 1 2 3 31 31 H 1.08995 * 109.46841 * 59.99937 * 5 3 2 32 32 H 1.09002 * 109.47075 * 300.00025 * 5 3 2 33 33 H 0.97000 * 119.99164 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47202 * 149.99818 * 15 6 5 35 35 H 1.09003 * 109.47027 * 29.99826 * 15 6 5 36 36 H 1.09000 * 109.47195 * 59.99882 * 16 15 6 37 37 H 1.09003 * 109.47105 * 299.99848 * 16 15 6 38 38 H 0.97002 * 119.99659 * 4.73882 * 19 17 16 39 39 H 1.07999 * 120.01175 * 359.95468 * 21 20 19 40 40 H 1.08002 * 119.95100 * 179.74469 * 22 21 20 41 41 H 1.08994 * 109.47030 * 270.27106 * 24 23 22 42 42 H 1.08997 * 109.47455 * 30.27598 * 24 23 22 43 43 H 1.09005 * 109.47104 * 150.27472 * 24 23 22 44 44 H 1.07998 * 120.04659 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6796 0.0002 7 6 4.1724 3.3378 -1.1854 8 1 4.5890 4.3341 -1.1890 9 6 3.8300 2.7244 -2.3828 10 7 2.8100 1.8938 -2.4285 11 14 4.8167 3.0779 -3.9289 12 1 5.8582 2.0334 -4.1011 13 1 3.9113 3.0728 -5.1059 14 1 5.4652 4.4084 -3.8089 15 6 4.1935 3.3802 1.2691 16 6 2.8839 4.0332 1.7157 17 6 3.1014 4.7534 3.0215 18 8 4.1963 4.7456 3.5433 19 7 2.0796 5.4071 3.6090 20 6 2.3035 6.1578 4.7683 21 6 1.6015 7.3377 4.9795 22 6 1.8273 8.0799 6.1220 23 6 2.7438 7.6450 7.0614 24 6 2.9837 8.4550 8.3095 25 6 3.4460 6.4692 6.8549 26 9 4.3449 6.0495 7.7719 27 6 3.2273 5.7246 5.7095 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7803 0.8892 33 1 2.5710 1.4649 -3.2650 34 1 4.9559 4.1480 1.1375 35 1 4.5215 2.6685 2.0268 36 1 2.1214 3.2654 1.8473 37 1 2.5559 4.7449 0.9581 38 1 1.1889 5.3570 3.2281 39 1 0.8826 7.6768 4.2484 40 1 1.2842 8.9993 6.2838 41 1 3.7802 9.1762 8.1270 42 1 2.0699 8.9836 8.5808 43 1 3.2745 7.7908 9.1234 44 1 3.7742 4.8075 5.5481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559581226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:12 Heat of formation + Delta-G solvation = -130.738422 kcal Electronic energy + Delta-G solvation = -29167.444431 eV Core-core repulsion = 24806.831007 eV Total energy + Delta-G solvation = -4360.613423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.95686 -41.63062 -40.76171 -39.60946 -37.89154 -36.41335 -36.07401 -34.01174 -32.84403 -31.58437 -31.51417 -29.60891 -27.65503 -27.59270 -25.92200 -24.22949 -23.32236 -22.38013 -21.62361 -21.29301 -19.25138 -18.88587 -18.37855 -18.04049 -17.41826 -17.13969 -16.87966 -16.75939 -16.67447 -16.52924 -16.41520 -16.28083 -15.49474 -15.34367 -14.84232 -14.54365 -14.34274 -14.28195 -14.09511 -13.94389 -13.72956 -13.47070 -13.37141 -13.25506 -12.98740 -12.72447 -12.64936 -12.60255 -12.42728 -12.35332 -12.06265 -11.92811 -11.73321 -11.32716 -11.23499 -10.96600 -10.91346 -10.45036 -9.85585 -9.14650 -9.10484 -8.01439 -5.21017 0.03882 0.18910 1.47889 1.48437 1.53668 1.60436 1.94136 2.01643 2.33786 2.57315 2.57808 3.17852 3.22795 3.46256 3.74143 3.86814 3.97594 4.08010 4.23077 4.23541 4.36444 4.42827 4.45454 4.49055 4.54992 4.67860 4.70661 4.79124 4.79523 4.90013 4.99039 5.02077 5.03685 5.10129 5.12525 5.23944 5.30361 5.36563 5.44028 5.66743 5.93230 5.97905 6.14843 6.30379 6.98550 7.04055 7.50839 7.77541 8.14180 9.08130 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002614 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.410692 B =10707.893608 C =11510.344812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.388 6.388 3 C 0.465 3.535 4 O -0.527 6.527 5 C 0.180 3.820 6 N -0.577 5.577 7 C -0.266 4.266 8 H 0.079 0.921 9 C -0.037 4.037 10 N -0.911 5.911 11 Si 0.956 3.044 12 H -0.285 1.285 13 H -0.303 1.303 14 H -0.274 1.274 15 C 0.164 3.836 16 C -0.137 4.137 17 C 0.522 3.478 18 O -0.554 6.554 19 N -0.666 5.666 20 C 0.155 3.845 21 C -0.144 4.144 22 C -0.066 4.066 23 C -0.139 4.139 24 C -0.110 4.110 25 C 0.090 3.910 26 F -0.147 7.147 27 C -0.178 4.178 28 H 0.036 0.964 29 H 0.121 0.879 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.428 0.572 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 7.798 16.780 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.305 6.305 3 C 0.306 3.694 4 O -0.415 6.415 5 C 0.050 3.950 6 N -0.296 5.296 7 C -0.395 4.395 8 H 0.096 0.904 9 C -0.233 4.233 10 N -0.556 5.556 11 Si 0.785 3.215 12 H -0.211 1.211 13 H -0.231 1.231 14 H -0.199 1.199 15 C 0.037 3.963 16 C -0.180 4.180 17 C 0.312 3.688 18 O -0.432 6.432 19 N -0.312 5.312 20 C 0.060 3.940 21 C -0.164 4.164 22 C -0.084 4.084 23 C -0.140 4.140 24 C -0.166 4.166 25 C 0.070 3.930 26 F -0.126 7.126 27 C -0.200 4.200 28 H 0.055 0.945 29 H 0.139 0.861 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.267 0.733 39 H 0.179 0.821 40 H 0.193 0.807 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.761 7.974 16.969 19.614 hybrid contribution -0.218 -0.263 -1.436 1.476 sum -5.979 7.711 15.533 18.343 Atomic orbital electron populations 1.23142 0.77459 1.04001 1.00856 1.86508 1.23269 1.35540 1.85219 1.25561 0.93775 0.80436 0.69603 1.90395 1.67241 1.37196 1.46647 1.20467 0.85774 0.86530 1.02205 1.44458 1.75351 1.07532 1.02211 1.19443 1.35210 1.01136 0.83754 0.90353 1.25278 0.97527 1.00562 0.99964 1.70147 1.23860 1.35000 1.26575 0.85429 0.78714 0.77993 0.79357 1.21141 1.23075 1.19911 1.20747 0.93639 0.95562 0.86317 1.22268 1.03148 1.00539 0.92007 1.21361 0.83501 0.77485 0.86475 1.90660 1.25937 1.60840 1.65714 1.43605 1.13201 1.48977 1.25413 1.17710 0.97516 0.92524 0.86216 1.21352 1.02545 0.92221 1.00302 1.21141 0.95911 1.00073 0.91268 1.20290 0.98539 0.94741 1.00460 1.20765 1.04102 0.99120 0.92646 1.17580 0.91818 0.95811 0.87785 1.91440 1.65785 1.90239 1.65137 1.21152 1.02892 1.02399 0.93523 0.94535 0.86063 0.92647 0.89435 0.89197 0.93998 0.92720 0.91977 0.89089 0.89602 0.73341 0.82112 0.80735 0.90222 0.88399 0.91953 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.46 16 2 O -0.39 -15.73 10.56 -51.40 -0.54 -16.27 16 3 C 0.46 21.20 5.99 71.24 0.43 21.62 16 4 O -0.53 -26.20 13.43 21.98 0.30 -25.90 16 5 C 0.18 7.99 5.59 85.63 0.48 8.47 16 6 N -0.58 -26.93 2.08 -706.35 -1.47 -28.40 16 7 C -0.27 -13.83 9.64 84.04 0.81 -13.02 16 8 H 0.08 4.07 8.00 -2.91 -0.02 4.04 16 9 C -0.04 -1.94 4.68 84.86 0.40 -1.54 16 10 N -0.91 -50.13 9.39 21.66 0.20 -49.92 16 11 Si 0.96 43.38 29.66 68.60 2.03 45.41 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.16 6.60 5.00 86.38 0.43 7.03 16 16 C -0.14 -4.96 5.30 29.85 0.16 -4.80 16 17 C 0.52 17.19 7.67 87.66 0.67 17.86 16 18 O -0.55 -21.42 13.44 -3.06 -0.04 -21.47 16 19 N -0.67 -17.02 5.33 -303.52 -1.62 -18.64 16 20 C 0.16 3.89 6.29 38.15 0.24 4.13 16 21 C -0.14 -2.55 9.97 22.40 0.22 -2.32 16 22 C -0.07 -0.98 9.69 22.24 0.22 -0.76 16 23 C -0.14 -2.64 5.89 -19.79 -0.12 -2.76 16 24 C -0.11 -1.44 9.83 71.24 0.70 -0.74 16 25 C 0.09 2.35 7.24 22.36 0.16 2.51 16 26 F -0.15 -4.12 16.47 44.97 0.74 -3.38 16 27 C -0.18 -5.23 8.67 22.43 0.19 -5.04 16 28 H 0.04 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.09 4.26 6.47 -2.39 -0.02 4.25 16 32 H 0.09 3.34 7.89 -2.39 -0.02 3.33 16 33 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.05 2.28 7.99 -2.39 -0.02 2.26 16 35 H 0.06 2.34 7.85 -2.39 -0.02 2.32 16 36 H 0.09 3.40 6.41 -2.39 -0.02 3.38 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.43 8.42 8.82 -92.71 -0.82 7.60 16 39 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 43 H 0.06 0.90 7.63 -2.38 -0.02 0.89 16 44 H 0.12 4.28 6.25 -2.91 -0.02 4.26 16 Total: -1.00 -69.31 374.21 6.01 -63.29 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.22 Total: 22.17 kcal Atomic # 6 Polarization: 26.91 SS G_CDS: 6.19 Total: 33.10 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -2.89 Total: -96.96 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -0.29 Total: -63.64 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.74 Total: -3.38 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.31 6.01 -63.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559581226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.444 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds