Wall clock time and date at job start Tue Mar 31 2020 20:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48499 * 109.46817 * 269.99945 * 3 2 1 5 5 H 1.48493 * 109.46706 * 30.00258 * 3 2 1 6 6 H 1.48495 * 109.46895 * 149.99951 * 3 2 1 7 7 C 1.38811 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00215 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.48168 * 126.40015 * 0.02652 * 9 7 2 11 11 C 1.55291 * 107.04004 * 175.03907 * 10 9 7 12 12 C 1.53746 * 101.84444 * 337.51883 * 11 10 9 13 13 H 1.09002 * 111.30849 * 280.15833 * 12 11 10 14 14 C 1.52240 * 114.74742 * 152.75658 * 12 11 10 15 15 N 1.47710 * 106.36627 * 189.47668 * 14 12 11 16 16 C 1.34779 * 119.68396 * 232.07541 * 15 14 12 17 17 O 1.21276 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99968 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47032 * 180.02562 * 18 16 15 20 20 F 1.39899 * 109.46976 * 300.00106 * 19 18 16 21 21 F 1.39904 * 109.47056 * 60.00101 * 19 18 16 22 22 C 1.53003 * 109.47252 * 180.02562 * 19 18 16 23 23 F 1.39898 * 109.47012 * 59.99688 * 22 19 18 24 24 F 1.39892 * 109.47136 * 179.97438 * 22 19 18 25 25 C 1.46596 * 120.63538 * 52.05553 * 15 14 12 26 26 C 1.53957 * 110.57741 * 312.18164 * 25 15 14 27 27 C 1.46154 * 125.89173 * 179.03368 * 9 7 2 28 28 H 1.08996 * 108.63412 * 93.71710 * 27 9 7 29 29 H 0.96997 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.91653 * 55.69286 * 10 9 7 31 31 H 1.08996 * 109.91750 * 294.38391 * 10 9 7 32 32 H 1.08996 * 110.95274 * 219.37875 * 11 10 9 33 33 H 1.09001 * 110.95254 * 95.65626 * 11 10 9 34 34 H 1.09005 * 110.06978 * 70.25992 * 14 12 11 35 35 H 1.09008 * 110.07101 * 308.69201 * 14 12 11 36 36 H 1.09009 * 109.47102 * 300.00388 * 18 16 15 37 37 H 1.08998 * 109.47118 * 60.00527 * 18 16 15 38 38 H 1.09003 * 109.46577 * 300.00263 * 22 19 18 39 39 H 1.09006 * 109.25740 * 72.46187 * 25 15 14 40 40 H 1.08995 * 109.25871 * 191.89719 * 25 15 14 41 41 H 1.09004 * 109.87841 * 170.50844 * 26 25 15 42 42 H 1.08998 * 109.87774 * 291.58756 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1469 -2.5533 -0.0006 11 6 -0.4341 -4.0740 -0.1289 12 6 0.8683 -4.5887 -0.7635 13 1 0.8850 -4.4052 -1.8378 14 6 1.2009 -6.0403 -0.4474 15 7 2.5739 -6.2698 -0.9413 16 6 2.8238 -7.3119 -1.7587 17 8 1.9236 -8.0561 -2.0849 18 6 4.2219 -7.5523 -2.2673 19 6 4.2311 -8.7883 -3.1690 20 9 3.8028 -9.9017 -2.4383 21 9 3.3700 -8.5818 -4.2521 22 6 5.6507 -9.0327 -3.6848 23 9 6.5114 -9.2394 -2.6014 24 9 5.6592 -10.1632 -4.5088 25 6 3.6674 -5.3746 -0.5514 26 6 3.2508 -3.9030 -0.7272 27 6 1.9225 -3.7220 -0.0210 28 1 2.0190 -4.0761 1.0053 29 1 -0.4850 0.8400 0.0004 30 1 -0.5803 -2.0207 -0.8471 31 1 -0.5631 -2.1743 0.9328 32 1 -1.2856 -4.2558 -0.7846 33 1 -0.5951 -4.5244 0.8506 34 1 0.5035 -6.7038 -0.9590 35 1 1.1575 -6.2083 0.6287 36 1 4.5555 -6.6848 -2.8369 37 1 4.8929 -7.7128 -1.4234 38 1 5.9848 -8.1652 -4.2539 39 1 3.9232 -5.5534 0.4931 40 1 4.5384 -5.5785 -1.1741 41 1 4.0003 -3.2497 -0.2804 42 1 3.1416 -3.6728 -1.7870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568516597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:39 Heat of formation + Delta-G solvation = -200.616664 kcal Electronic energy + Delta-G solvation = -30789.919140 eV Core-core repulsion = 25884.418829 eV Total energy + Delta-G solvation = -4905.500311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.18512 -48.92504 -47.82068 -47.30159 -40.39218 -38.36043 -35.51788 -33.42528 -32.57492 -31.68610 -29.87852 -28.59666 -27.56677 -24.98148 -23.73843 -22.71502 -22.41967 -20.25114 -19.98669 -19.29480 -18.88299 -18.60013 -17.95931 -17.10315 -17.06162 -16.67755 -16.18591 -15.63429 -15.49111 -15.03234 -14.81302 -14.54171 -14.44403 -14.20867 -14.06015 -14.00396 -13.78077 -13.70793 -13.54041 -13.26772 -12.98735 -12.87316 -12.58434 -12.49349 -12.41608 -11.73944 -11.57088 -11.50747 -11.25332 -10.92003 -10.87155 -10.80068 -10.26015 -10.17114 -9.98664 -9.86118 -9.70347 -9.56360 -8.68134 -8.67957 -6.90090 -5.77034 -3.10647 2.16258 2.39763 2.78895 3.18177 3.32319 3.34991 3.39732 3.42377 3.49483 3.54177 4.18163 4.24582 4.36629 4.43058 4.72668 4.85411 4.89172 4.95856 5.12515 5.24402 5.41795 5.48741 5.51332 5.70808 5.78664 5.93062 6.03540 6.07998 6.13895 6.23571 6.37502 6.52117 6.55064 6.72384 6.97157 7.24782 7.48732 7.55985 7.75271 7.95875 8.18271 9.13524 9.76715 10.43989 11.35308 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.002749 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.121393 B =10181.841112 C =10948.159049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.079 0.921 14 C 0.127 3.873 15 N -0.602 5.602 16 C 0.516 3.484 17 O -0.527 6.527 18 C -0.195 4.195 19 C 0.272 3.728 20 F -0.170 7.170 21 F -0.167 7.167 22 C 0.236 3.764 23 F -0.180 7.180 24 F -0.182 7.182 25 C 0.108 3.892 26 C -0.130 4.130 27 C 0.165 3.835 28 H 0.021 0.979 29 H 0.253 0.747 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.379 -15.833 -4.853 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.097 0.903 14 C 0.005 3.995 15 N -0.335 5.335 16 C 0.302 3.698 17 O -0.404 6.404 18 C -0.235 4.235 19 C 0.233 3.767 20 F -0.151 7.151 21 F -0.147 7.147 22 C 0.181 3.819 23 F -0.162 7.162 24 F -0.163 7.163 25 C -0.016 4.016 26 C -0.169 4.169 27 C 0.057 3.943 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.819 -16.017 -4.980 19.960 hybrid contribution 0.499 0.877 -0.012 1.010 sum 11.318 -15.140 -4.992 19.551 Atomic orbital electron populations 1.69931 1.04914 1.25109 1.56828 1.24801 0.95675 0.97662 1.02249 0.86158 0.78610 0.83676 0.77537 1.21652 1.21688 1.20709 1.18994 0.90335 0.82375 1.43966 0.90401 1.44406 1.01545 0.99396 1.86667 1.21523 0.83728 0.88266 1.01001 1.22705 0.95691 0.99683 0.99375 1.22631 0.97886 0.93136 1.00742 0.90283 1.21687 0.81372 0.97309 0.99118 1.48250 1.10625 1.27032 1.47552 1.19805 0.89228 0.81488 0.79271 1.90787 1.46055 1.46031 1.57522 1.22902 1.00214 0.97967 1.02441 1.21572 0.87006 0.86126 0.81951 1.93130 1.90964 1.53741 1.77242 1.93137 1.71428 1.95017 1.55152 1.22858 0.88306 0.89376 0.81401 1.93066 1.70864 1.95988 1.56241 1.93079 1.96790 1.54458 1.71987 1.21883 0.88255 0.90710 1.00714 1.21891 0.99720 0.93226 1.02100 1.20755 0.90943 0.87367 0.95213 0.96135 0.93702 0.92767 0.94242 0.91953 0.92266 0.89049 0.91043 0.84933 0.84833 0.83778 0.91114 0.90380 0.90260 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.44 55.49 0.58 -25.72 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.23 -5.97 9.89 -15.06 -0.15 -6.12 16 8 H 0.08 1.93 7.27 -52.48 -0.38 1.55 16 9 N -0.60 -14.20 3.37 -162.59 -0.55 -14.74 16 10 C 0.18 4.16 5.46 -1.91 -0.01 4.15 16 11 C -0.14 -2.42 6.56 -25.13 -0.16 -2.58 16 12 C -0.12 -2.07 2.81 -89.37 -0.25 -2.32 16 13 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 14 C 0.13 1.81 5.96 -3.77 -0.02 1.79 16 15 N -0.60 -7.69 3.00 -172.49 -0.52 -8.21 16 16 C 0.52 6.71 7.44 -10.98 -0.08 6.63 16 17 O -0.53 -8.94 14.19 5.56 0.08 -8.86 16 18 C -0.19 -1.61 3.50 -27.88 -0.10 -1.71 16 19 C 0.27 2.73 1.40 -26.73 -0.04 2.69 16 20 F -0.17 -2.25 16.10 2.25 0.04 -2.21 16 21 F -0.17 -2.05 16.13 2.25 0.04 -2.02 16 22 C 0.24 1.65 4.83 37.16 0.18 1.83 16 23 F -0.18 -1.38 16.80 2.25 0.04 -1.35 16 24 F -0.18 -1.74 17.30 2.25 0.04 -1.70 16 25 C 0.11 1.15 6.21 -3.49 -0.02 1.13 16 26 C -0.13 -1.92 5.54 -26.98 -0.15 -2.07 16 27 C 0.17 3.06 2.61 -67.61 -0.18 2.88 16 28 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.05 1.41 7.21 -51.93 -0.37 1.04 16 31 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 35 H 0.07 0.97 8.08 -51.92 -0.42 0.55 16 36 H 0.13 0.67 7.55 -51.92 -0.39 0.27 16 37 H 0.13 0.78 7.65 -51.93 -0.40 0.39 16 38 H 0.15 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.56 5.83 -51.93 -0.30 0.26 16 41 H 0.08 1.18 7.67 -51.93 -0.40 0.78 16 42 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -33.34 346.91 -6.64 -39.99 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.51 Total: -2.67 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.08 Total: 6.00 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.49 Total: -48.67 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.15 Total: -7.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.34 -6.64 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568516597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.629 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds