Wall clock time and date at job start Tue Mar 31 2020 20:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48499 * 109.46817 * 269.99945 * 3 2 1 5 5 H 1.48493 * 109.46706 * 30.00258 * 3 2 1 6 6 H 1.48495 * 109.46895 * 149.99951 * 3 2 1 7 7 C 1.38811 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00215 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.48168 * 126.40015 * 0.02652 * 9 7 2 11 11 C 1.55291 * 107.04004 * 175.03907 * 10 9 7 12 12 C 1.53746 * 101.84444 * 337.51883 * 11 10 9 13 13 H 1.09002 * 111.30849 * 280.15833 * 12 11 10 14 14 C 1.52240 * 114.74742 * 152.75658 * 12 11 10 15 15 N 1.47710 * 106.36627 * 189.47668 * 14 12 11 16 16 C 1.34779 * 119.68396 * 232.07541 * 15 14 12 17 17 O 1.21276 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99968 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47032 * 180.02562 * 18 16 15 20 20 F 1.39899 * 109.46976 * 300.00106 * 19 18 16 21 21 F 1.39904 * 109.47056 * 60.00101 * 19 18 16 22 22 C 1.53003 * 109.47252 * 180.02562 * 19 18 16 23 23 F 1.39898 * 109.47012 * 59.99688 * 22 19 18 24 24 F 1.39892 * 109.47136 * 179.97438 * 22 19 18 25 25 C 1.46596 * 120.63538 * 52.05553 * 15 14 12 26 26 C 1.53957 * 110.57741 * 312.18164 * 25 15 14 27 27 C 1.46154 * 125.89173 * 179.03368 * 9 7 2 28 28 H 1.08996 * 108.63412 * 93.71710 * 27 9 7 29 29 H 0.96997 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.91653 * 55.69286 * 10 9 7 31 31 H 1.08996 * 109.91750 * 294.38391 * 10 9 7 32 32 H 1.08996 * 110.95274 * 219.37875 * 11 10 9 33 33 H 1.09001 * 110.95254 * 95.65626 * 11 10 9 34 34 H 1.09005 * 110.06978 * 70.25992 * 14 12 11 35 35 H 1.09008 * 110.07101 * 308.69201 * 14 12 11 36 36 H 1.09009 * 109.47102 * 300.00388 * 18 16 15 37 37 H 1.08998 * 109.47118 * 60.00527 * 18 16 15 38 38 H 1.09003 * 109.46577 * 300.00263 * 22 19 18 39 39 H 1.09006 * 109.25740 * 72.46187 * 25 15 14 40 40 H 1.08995 * 109.25871 * 191.89719 * 25 15 14 41 41 H 1.09004 * 109.87841 * 170.50844 * 26 25 15 42 42 H 1.08998 * 109.87774 * 291.58756 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1469 -2.5533 -0.0006 11 6 -0.4341 -4.0740 -0.1289 12 6 0.8683 -4.5887 -0.7635 13 1 0.8850 -4.4052 -1.8378 14 6 1.2009 -6.0403 -0.4474 15 7 2.5739 -6.2698 -0.9413 16 6 2.8238 -7.3119 -1.7587 17 8 1.9236 -8.0561 -2.0849 18 6 4.2219 -7.5523 -2.2673 19 6 4.2311 -8.7883 -3.1690 20 9 3.8028 -9.9017 -2.4383 21 9 3.3700 -8.5818 -4.2521 22 6 5.6507 -9.0327 -3.6848 23 9 6.5114 -9.2394 -2.6014 24 9 5.6592 -10.1632 -4.5088 25 6 3.6674 -5.3746 -0.5514 26 6 3.2508 -3.9030 -0.7272 27 6 1.9225 -3.7220 -0.0210 28 1 2.0190 -4.0761 1.0053 29 1 -0.4850 0.8400 0.0004 30 1 -0.5803 -2.0207 -0.8471 31 1 -0.5631 -2.1743 0.9328 32 1 -1.2856 -4.2558 -0.7846 33 1 -0.5951 -4.5244 0.8506 34 1 0.5035 -6.7038 -0.9590 35 1 1.1575 -6.2083 0.6287 36 1 4.5555 -6.6848 -2.8369 37 1 4.8929 -7.7128 -1.4234 38 1 5.9848 -8.1652 -4.2539 39 1 3.9232 -5.5534 0.4931 40 1 4.5384 -5.5785 -1.1741 41 1 4.0003 -3.2497 -0.2804 42 1 3.1416 -3.6728 -1.7870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568516597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:38 Heat of formation + Delta-G solvation = -221.811190 kcal Electronic energy + Delta-G solvation = -30790.838204 eV Core-core repulsion = 25884.418829 eV Total energy + Delta-G solvation = -4906.419375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.84409 -49.61200 -48.48848 -48.04468 -41.50191 -39.70363 -36.84136 -34.68005 -33.82230 -33.00279 -31.38845 -29.93188 -28.47097 -26.64520 -25.03317 -23.79771 -23.36066 -21.88089 -21.30293 -20.36320 -19.53199 -19.38854 -18.69476 -18.42718 -17.75838 -17.73094 -17.28287 -16.85953 -16.58848 -16.44353 -15.92276 -15.64802 -15.53074 -15.13235 -15.10281 -15.00545 -14.76512 -14.62178 -14.56330 -14.26128 -14.17346 -13.89628 -13.81435 -13.42206 -13.35482 -13.14877 -13.09101 -13.01538 -12.66097 -12.48278 -12.10504 -11.99661 -11.86228 -11.76610 -11.58770 -11.50643 -11.04941 -10.91653 -10.69119 -9.74513 -8.85769 -7.81071 -5.15525 1.46218 1.48280 1.49603 1.52090 1.57991 1.94242 2.52065 2.52760 2.80400 2.86287 3.02545 3.37595 3.40558 3.54094 3.73621 3.77790 3.85619 3.89933 3.99791 4.18171 4.24391 4.29260 4.31978 4.40879 4.52426 4.66309 4.71796 4.82265 4.83925 4.93447 5.03714 5.08211 5.24671 5.44896 5.55252 5.56342 5.66810 5.77401 6.22196 6.28809 7.00369 7.11217 7.81827 8.49908 9.30937 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.002749 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.121393 B =10181.841112 C =10948.159049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.263 1.263 7 C -0.227 4.227 8 H 0.092 0.908 9 N -0.617 5.617 10 C 0.185 3.815 11 C -0.124 4.124 12 C -0.108 4.108 13 H 0.062 0.938 14 C 0.134 3.866 15 N -0.603 5.603 16 C 0.510 3.490 17 O -0.575 6.575 18 C -0.188 4.188 19 C 0.253 3.747 20 F -0.197 7.197 21 F -0.186 7.186 22 C 0.242 3.758 23 F -0.183 7.183 24 F -0.200 7.200 25 C 0.112 3.888 26 C -0.125 4.125 27 C 0.154 3.846 28 H 0.023 0.977 29 H 0.243 0.757 30 H 0.014 0.986 31 H 0.003 0.997 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.201 0.799 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -16.773 -5.031 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.356 4.356 8 H 0.110 0.890 9 N -0.342 5.342 10 C 0.060 3.940 11 C -0.162 4.162 12 C -0.129 4.129 13 H 0.080 0.920 14 C 0.012 3.988 15 N -0.335 5.335 16 C 0.298 3.702 17 O -0.455 6.455 18 C -0.228 4.228 19 C 0.216 3.784 20 F -0.178 7.178 21 F -0.167 7.167 22 C 0.188 3.812 23 F -0.164 7.164 24 F -0.182 7.182 25 C -0.010 4.010 26 C -0.164 4.164 27 C 0.048 3.952 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.021 0.979 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.193 0.807 37 H 0.184 0.816 38 H 0.218 0.782 39 H 0.107 0.893 40 H 0.145 0.855 41 H 0.100 0.900 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.372 -16.989 -5.151 22.841 hybrid contribution -0.623 1.132 0.074 1.294 sum 13.749 -15.857 -5.077 21.593 Atomic orbital electron populations 1.70170 1.06485 1.24999 1.59013 1.25647 0.96476 1.01092 1.03364 0.85129 0.77837 0.79422 0.77299 1.21573 1.22902 1.18799 1.19466 0.91190 0.83323 1.41626 0.89003 1.44703 1.01994 1.01024 1.86448 1.21256 0.83882 0.91454 0.97447 1.22578 0.97041 0.95694 1.00916 1.22445 0.96432 0.94717 0.99278 0.91956 1.21463 0.82808 0.94759 0.99791 1.48310 1.10247 1.27523 1.47463 1.20599 0.90807 0.80528 0.78247 1.90774 1.48115 1.47623 1.58971 1.23052 0.97301 0.98684 1.03713 1.22250 0.88280 0.86133 0.81771 1.93073 1.91499 1.55297 1.77912 1.93094 1.72404 1.95081 1.56081 1.23252 0.86288 0.90353 0.81334 1.93064 1.70570 1.96089 1.56639 1.93043 1.96735 1.55884 1.72489 1.22047 0.88666 0.87183 1.03059 1.21837 0.97293 0.96502 1.00767 1.21033 0.93476 0.84754 0.95952 0.95932 0.94745 0.96724 0.97868 0.90747 0.90459 0.89959 0.89824 0.80685 0.81576 0.78244 0.89325 0.85534 0.90037 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.19 10.44 21.65 0.23 -56.96 16 2 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 3 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 4 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.23 -11.90 9.89 84.03 0.83 -11.07 16 8 H 0.09 4.43 7.27 -2.91 -0.02 4.41 16 9 N -0.62 -29.76 3.37 -668.30 -2.25 -32.02 16 10 C 0.18 8.97 5.46 86.85 0.47 9.45 16 11 C -0.12 -4.43 6.56 31.63 0.21 -4.23 16 12 C -0.11 -3.54 2.81 -9.98 -0.03 -3.57 16 13 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 14 C 0.13 3.60 5.96 85.90 0.51 4.11 16 15 N -0.60 -13.42 3.00 -818.02 -2.45 -15.87 16 16 C 0.51 11.74 7.44 87.66 0.65 12.39 16 17 O -0.58 -18.91 14.19 -3.02 -0.04 -18.95 16 18 C -0.19 -2.21 3.50 29.85 0.10 -2.11 16 19 C 0.25 4.36 1.40 30.59 0.04 4.40 16 20 F -0.20 -4.98 16.10 44.97 0.72 -4.25 16 21 F -0.19 -4.28 16.13 44.97 0.73 -3.55 16 22 C 0.24 2.45 4.83 71.98 0.35 2.80 16 23 F -0.18 -2.06 16.80 44.97 0.76 -1.31 16 24 F -0.20 -3.38 17.30 44.97 0.78 -2.60 16 25 C 0.11 1.86 6.21 86.68 0.54 2.40 16 26 C -0.12 -3.31 5.54 30.43 0.17 -3.14 16 27 C 0.15 5.51 2.61 45.38 0.12 5.62 16 28 H 0.02 0.83 7.92 -2.39 -0.02 0.81 16 29 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.01 0.81 7.21 -2.39 -0.02 0.79 16 31 H 0.00 0.17 7.77 -2.39 -0.02 0.15 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.49 8.11 -2.39 -0.02 2.47 16 34 H 0.08 2.41 7.00 -2.38 -0.02 2.39 16 35 H 0.08 2.06 8.08 -2.38 -0.02 2.04 16 36 H 0.18 0.57 7.55 -2.38 -0.02 0.55 16 37 H 0.17 0.91 7.65 -2.39 -0.02 0.90 16 38 H 0.20 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.13 0.93 5.83 -2.39 -0.01 0.92 16 41 H 0.08 2.14 7.67 -2.39 -0.02 2.13 16 42 H 0.06 1.68 8.11 -2.39 -0.02 1.66 16 Total: -1.00 -79.28 346.91 5.97 -73.30 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.05 Total: 2.42 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 4.43 Total: 13.47 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.48 Total: -104.85 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.04 Total: -18.95 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 2.98 Total: -11.72 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -79.28 5.97 -73.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568516597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.507 kcal (2) G-P(sol) polarization free energy of solvation -79.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds