Wall clock time and date at job start Tue Mar 31 2020 21:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35062 * 125.56603 * 2 1 4 4 O 1.21304 * 127.28259 * 359.97438 * 3 2 1 5 5 C 1.49978 * 105.43284 * 179.97438 * 3 2 1 6 6 O 1.21302 * 127.28488 * 180.25851 * 5 3 2 7 7 N 1.35064 * 105.43192 * 359.97438 * 5 3 2 8 8 C 1.46500 * 125.56514 * 180.02562 * 7 5 3 9 9 C 1.50694 * 109.47155 * 89.97549 * 8 7 5 10 10 O 1.21286 * 120.00259 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00062 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00146 * 179.97438 * 11 9 8 13 13 C 1.53001 * 110.64165 * 300.70226 * 12 11 9 14 14 C 1.55157 * 110.72431 * 177.55761 * 12 11 9 15 15 C 1.55396 * 101.36593 * 277.04802 * 14 12 11 16 16 N 1.47427 * 104.87090 * 323.01114 * 15 14 12 17 17 C 1.36933 * 125.64794 * 204.09754 * 16 15 14 18 18 H 1.07995 * 120.00197 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00254 * 0.04511 * 17 16 15 20 20 N 1.31631 * 119.99818 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00389 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47271 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47341 * 119.99902 * 21 19 17 24 24 H 1.48502 * 109.47176 * 239.99623 * 21 19 17 25 25 C 1.47025 * 108.70506 * 24.13466 * 16 15 14 26 26 C 1.34271 * 108.86391 * 0.02562 * 7 5 3 27 27 O 1.21483 * 124.29710 * 180.02562 * 26 7 5 28 28 H 1.08998 * 109.46703 * 270.02501 * 1 2 3 29 29 H 1.08991 * 109.47190 * 30.02342 * 1 2 3 30 30 H 1.09004 * 109.46605 * 150.02959 * 1 2 3 31 31 H 1.09003 * 109.46880 * 209.97472 * 8 7 5 32 32 H 1.08997 * 109.47492 * 329.97233 * 8 7 5 33 33 H 0.96997 * 120.00364 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47276 * 59.29974 * 13 12 11 35 35 H 1.09004 * 109.46955 * 179.29620 * 13 12 11 36 36 H 1.08990 * 109.47247 * 299.29529 * 13 12 11 37 37 H 1.08998 * 111.00111 * 35.21273 * 14 12 11 38 38 H 1.08992 * 111.00596 * 159.06487 * 14 12 11 39 39 H 1.08997 * 110.33836 * 204.16828 * 15 14 12 40 40 H 1.08994 * 110.35384 * 81.86421 * 15 14 12 41 41 H 0.96995 * 119.99812 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.88274 * 239.51972 * 25 16 15 43 43 H 1.09003 * 109.88001 * 118.35236 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8929 2.2578 -0.0004 5 6 3.6587 0.5824 0.0006 6 8 4.6808 1.2356 0.0052 7 7 3.5480 -0.7637 0.0015 8 6 4.6659 -1.7106 0.0030 9 6 5.0486 -2.0337 1.4242 10 8 4.4472 -1.5230 2.3453 11 7 6.0593 -2.8903 1.6717 12 6 6.4318 -3.2041 3.0534 13 6 6.8394 -1.9346 3.8037 14 6 7.5740 -4.2536 3.0893 15 6 6.7774 -5.5787 2.9327 16 7 5.5347 -5.3656 3.6967 17 6 4.7515 -6.3502 4.2373 18 1 3.8559 -6.0899 4.7818 19 6 5.1088 -7.6830 4.0858 20 7 6.2003 -8.0003 3.4220 21 14 4.0408 -9.0261 4.8237 22 1 2.8791 -8.4112 5.5146 23 1 3.5560 -9.9225 3.7437 24 1 4.8380 -9.8125 5.7991 25 6 5.2751 -3.9210 3.7814 26 6 2.2461 -1.0922 0.0009 27 8 1.8279 -2.2328 0.0019 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 4.3680 -2.6250 -0.5100 32 1 5.5185 -1.2669 -0.5110 33 1 6.5401 -3.2991 0.9351 34 1 6.0082 -1.2294 3.8032 35 1 7.1003 -2.1878 4.8313 36 1 7.7001 -1.4821 3.3114 37 1 8.2642 -4.1084 2.2583 38 1 8.1013 -4.2247 4.0427 39 1 7.3419 -6.4118 3.3513 40 1 6.5503 -5.7626 1.8826 41 1 6.4498 -8.9316 3.3158 42 1 5.2451 -3.6103 4.8258 43 1 4.3284 -3.6853 3.2951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569647695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:54 Heat of formation + Delta-G solvation = -45.449976 kcal Electronic energy + Delta-G solvation = -30379.066959 eV Core-core repulsion = 26042.071882 eV Total energy + Delta-G solvation = -4336.995077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.66521 -40.16035 -39.53608 -39.07898 -37.44231 -36.73493 -35.49772 -34.11159 -32.20809 -30.77497 -29.79837 -28.69583 -27.20962 -25.94359 -25.70186 -23.74672 -22.58216 -22.23276 -20.94321 -20.34945 -19.18732 -18.34626 -18.21640 -17.43634 -17.18638 -16.84821 -16.68954 -16.11910 -15.62965 -15.39061 -15.14203 -15.02790 -14.81220 -14.68425 -13.83688 -13.75160 -13.54536 -13.20732 -13.12878 -13.04254 -12.97424 -12.69021 -12.25854 -11.94657 -11.79335 -11.60498 -11.34305 -10.95850 -10.90031 -10.87892 -10.53077 -10.45280 -10.39685 -10.38362 -10.07068 -9.98088 -9.68958 -9.35551 -8.79567 -8.66110 -6.83322 -5.66907 -3.07232 -0.03068 1.36145 1.66984 2.19269 2.23746 2.60111 3.23177 3.39788 3.45917 3.48315 3.53302 4.18845 4.47774 4.55741 4.62745 4.79413 4.83470 4.87176 4.92520 5.11758 5.17484 5.29177 5.34788 5.46084 5.52659 5.69299 5.95966 6.11165 6.17488 6.21509 6.27836 6.30646 6.40087 6.45205 6.63095 6.76641 6.81085 7.03802 7.20146 7.41286 7.59392 7.64568 7.81039 8.25275 8.34223 9.21800 9.82203 10.46377 11.37563 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.003221 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.617268 B = 8691.198343 C = 9880.386108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.574 5.574 3 C 0.514 3.486 4 O -0.415 6.415 5 C 0.514 3.486 6 O -0.409 6.409 7 N -0.556 5.556 8 C 0.100 3.900 9 C 0.501 3.499 10 O -0.528 6.528 11 N -0.699 5.699 12 C 0.159 3.841 13 C -0.150 4.150 14 C -0.146 4.146 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.217 4.217 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.138 3.862 26 C 0.713 3.287 27 O -0.475 6.475 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.011 0.989 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 15.855 -11.036 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.324 5.324 3 C 0.294 3.706 4 O -0.279 6.279 5 C 0.295 3.705 6 O -0.273 6.273 7 N -0.305 5.305 8 C -0.024 4.024 9 C 0.284 3.716 10 O -0.404 6.404 11 N -0.350 5.350 12 C 0.073 3.927 13 C -0.209 4.209 14 C -0.185 4.185 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.345 4.345 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.011 3.989 26 C 0.416 3.584 27 O -0.342 6.342 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.029 0.971 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.831 16.348 -10.328 19.713 hybrid contribution -0.373 -1.049 0.000 1.113 sum -4.203 15.299 -10.329 18.931 Atomic orbital electron populations 1.22001 0.73079 1.05321 1.04672 1.46536 1.10027 1.07062 1.68748 1.20806 0.87634 0.85583 0.76569 1.90844 1.79444 1.16626 1.41023 1.20820 0.90907 0.82311 0.76498 1.90847 1.33414 1.62555 1.40457 1.46096 1.07553 1.08363 1.68465 1.21657 0.88659 0.94681 0.97403 1.20448 0.80651 0.79835 0.90632 1.90709 1.52238 1.52085 1.45390 1.45869 1.34571 1.45258 1.09320 1.21419 0.96553 0.94526 0.80152 1.22044 1.01478 0.97406 0.99929 1.23449 0.96008 0.97411 1.01660 1.22032 0.86984 0.93694 0.94505 1.44505 1.25994 0.99437 1.63062 1.19138 1.03280 0.85381 1.26731 0.90518 1.24754 0.98214 0.96975 1.00792 1.69780 1.24983 1.16354 1.46266 0.85995 0.79353 0.81882 0.78292 1.20545 1.21783 1.21752 1.21590 0.95034 0.85395 0.96859 1.15808 0.80679 0.85039 0.76878 1.91087 1.75818 1.18234 1.49034 0.89997 0.88740 0.88418 0.84749 0.85107 0.76499 0.90984 0.91647 0.93031 0.91729 0.90418 0.87398 0.97085 0.93849 0.95187 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.89 59.85 0.65 1.20 16 2 N -0.57 -5.57 3.06 -128.66 -0.39 -5.96 16 3 C 0.51 5.55 8.31 -11.21 -0.09 5.46 16 4 O -0.41 -5.12 17.88 5.54 0.10 -5.02 16 5 C 0.51 5.98 8.31 -11.20 -0.09 5.89 16 6 O -0.41 -5.49 17.89 5.54 0.10 -5.39 16 7 N -0.56 -6.28 2.15 -122.52 -0.26 -6.55 16 8 C 0.10 1.00 6.34 -5.20 -0.03 0.97 16 9 C 0.50 7.23 7.11 -10.99 -0.08 7.15 16 10 O -0.53 -9.55 13.38 5.55 0.07 -9.48 16 11 N -0.70 -9.91 5.15 -45.91 -0.24 -10.15 16 12 C 0.16 2.71 0.80 -129.98 -0.10 2.61 16 13 C -0.15 -2.30 8.41 37.16 0.31 -1.99 16 14 C -0.15 -2.52 6.11 -24.32 -0.15 -2.66 16 15 C 0.15 3.50 5.88 -2.26 -0.01 3.49 16 16 N -0.60 -15.39 3.40 -169.76 -0.58 -15.97 16 17 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.14 3.02 6.16 -3.06 -0.02 3.00 16 26 C 0.71 8.47 8.32 -87.82 -0.73 7.74 16 27 O -0.47 -6.94 17.27 5.38 0.09 -6.85 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.10 0.53 7.98 -51.93 -0.41 0.11 16 31 H 0.13 1.13 7.98 -51.93 -0.41 0.71 16 32 H 0.13 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.40 4.50 8.48 -40.82 -0.35 4.16 16 34 H 0.07 1.21 6.21 -51.93 -0.32 0.89 16 35 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 38 H 0.08 1.33 8.05 -51.93 -0.42 0.92 16 39 H 0.11 2.82 5.87 -51.93 -0.31 2.51 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 43 H 0.03 0.76 6.68 -51.93 -0.35 0.41 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -35.94 365.51 -6.13 -42.06 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.47 Total: 0.35 kcal Atomic # 6 Polarization: 26.75 SS G_CDS: -0.60 Total: 26.15 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.91 Total: -64.51 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: 0.37 Total: -26.74 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.94 -6.13 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569647695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.386 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds